├── .all-contributorsrc ├── .github └── workflows │ └── deploy_book.yml ├── .gitignore ├── LICENSE ├── Makefile ├── README.md ├── interactiveTreeVisualization └── epilepsyClassification2017 │ ├── tree.html │ ├── treeData.js │ ├── treeFunctions.js │ └── treeStyle.css ├── matlabCode ├── anat │ ├── createBIDS_T1w_json_full.m │ ├── createBIDS_T1w_json_full_schma_based.m │ └── createBIDS_T1w_json_short.m ├── eeg-meg │ ├── createBIDS_meg_json_full.m │ ├── createBIDS_meg_json_short.m │ └── rename_brainvision_files.m ├── fmap │ └── createBIDS_fmap_json.m ├── func │ ├── createBIDS_bold_json_full.m │ └── createBIDS_bold_json_short.m ├── general │ ├── README.md │ ├── bids_spreadsheet2participants.m │ ├── createBIDS_dataset_description_json.m │ ├── createBIDS_events_tsv_json_full.m │ ├── createBIDS_participants_tsv.m │ ├── createBIDS_samples_tsv.m │ ├── input │ │ └── spreadsheet_to_convert.xlsx │ └── tests │ │ ├── data │ │ ├── participants.json │ │ └── participants.tsv │ │ └── test_bids_spreadsheet2participants.m ├── ieeg │ ├── createBIDS_channels_tsv.m │ ├── createBIDS_coordsystem_json.m │ ├── createBIDS_data_WriteBrainVisionWithFieldtrip.m │ ├── createBIDS_electrodes_tsv.m │ └── createBIDS_ieeg_json.m ├── micr │ ├── createBIDS_micr_json_full.m │ └── createBIDS_micr_json_short.m ├── miss_hit.cfg └── pet │ ├── createBIDS_blood_auto_tsv_and_json_short.m │ ├── createBIDS_blood_manual_tsv_and_json_full.m │ ├── createBIDS_blood_manual_tsv_and_json_short.m │ ├── createBIDS_pet_json_full.m │ └── createBIDS_pet_json_short.m ├── pythonCode ├── createBIDS_MP2RAGE_json.py └── createBIDS_dataset_description_json.py ├── reports └── Google-2018-report.md ├── src ├── CONTRIBUTING.md ├── _config.yml ├── _static │ └── js │ │ ├── treeData.js │ │ └── treeFunctions.js ├── _toc.yml ├── epilepsy_phenotype.rst ├── images │ ├── favicon.ico │ ├── favicon.png │ ├── favicon_package_v0.16.zip │ └── logo.png ├── index.md ├── js │ └── jquery-3.4.1.min.js ├── references.bib └── tree.html ├── templates ├── participants.json ├── participants.tsv ├── phenotype │ ├── EpilepsyClassification.tsv │ └── EpilepsyClassification2017.json ├── samples.json ├── samples.tsv ├── sub-01 │ └── ses-01 │ │ ├── anat │ │ ├── sub-01_ses-01_acq-FullExample_run-01_T1w.json │ │ └── sub-01_ses-01_acq-ShortExample_run-01_T1w.json │ │ ├── eeg │ │ ├── sub-01_ses-01_task-FilterExample_eeg.json │ │ ├── sub-01_ses-01_task-FullExample_eeg.json │ │ ├── sub-01_ses-01_task-MinimalExample_eeg.json │ │ └── sub-01_ses-01_task-ReferenceExample_eeg.json │ │ ├── fmap │ │ ├── sub-01_ses-01_acq-Case1_run-01_phasediff.json │ │ ├── sub-01_ses-01_acq-Case2_run-01_phase1.json │ │ ├── sub-01_ses-01_acq-Case2_run-01_phase2.json │ │ ├── sub-01_ses-01_acq-Case3_run-01_fieldmap.json │ │ └── sub-01_ses-01_acq-Case4_dir-LR_run-01_epi.json │ │ ├── func │ │ ├── sub-01_ses-01_task-FullExample_run-01_bold.json │ │ ├── sub-01_ses-01_task-FullExample_run-01_events.json │ │ ├── sub-01_ses-01_task-FullExample_run-01_events.tsv │ │ └── sub-01_ses-01_task-ShortExample_run-01_bold.json │ │ ├── ieeg │ │ ├── sub-01_ses-01_coordsystem.json │ │ ├── sub-01_ses-01_electrodes.tsv │ │ ├── sub-01_ses-01_task-LongExample_run-01_channels.tsv │ │ └── sub-01_ses-01_task-LongExample_run-01_ieeg.json │ │ ├── meg │ │ ├── sub-01_ses-01_task-FullExample_acq-CTF_run-1_proc-sss_meg.json │ │ └── sub-01_ses-01_task-ShortExample_acq-CTF_run-1_proc-sss_meg.json │ │ ├── micr │ │ ├── sub-01_ses-01_sample-01_acq-Full_stain-03_chunk-01_SEM.json │ │ └── sub-01_ses-01_sample-01_acq-Short_stain-03_chunk-01_SEM.json │ │ └── pet │ │ ├── sub-01_ses-01_recording-AutosamplerShortExample_blood.json │ │ ├── sub-01_ses-01_recording-AutosamplerShortExample_blood.tsv │ │ ├── sub-01_ses-01_recording-ManualFullExample_blood.json │ │ ├── sub-01_ses-01_recording-ManualFullExample_blood.tsv │ │ ├── sub-01_ses-01_recording-ManualShortExample_blood.json │ │ ├── sub-01_ses-01_recording-ManualShortExample_blood.tsv │ │ ├── sub-01_ses-01_task-FullExample_pet.json │ 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