├── .gitignore ├── .gitmodules ├── LICENSE.md ├── README.md ├── exps ├── __init__.py ├── bmc.py ├── exp_class.py ├── exp_net.py ├── exp_simple.py ├── exp_tree.py ├── expr_sweep.py ├── fig_jk.py ├── fig_yj.py ├── jsonplotter.py ├── karen.py ├── mcsizeplotter.py ├── mpm.py ├── mpm_play.py ├── priorstrength.py ├── samplesize.py ├── simpleplotter.py ├── tcga.py └── treevbnet.py ├── include └── utils.h ├── lib └── libdai.so ├── samcnet ├── __init__.py ├── bayesnet.pxd ├── bayesnet.pyx ├── bayesnet.so ├── bayesnetcpd.pxd ├── bayesnetcpd.pyx ├── bayesnetcpd.so ├── calibrate.py ├── csnet.pxd ├── dai_bind.pxd ├── data.py ├── generator.py ├── lori.py ├── metropolis.py ├── mh.pyx ├── mh.so ├── mixturepoisson.pyx ├── mixturepoisson.so ├── probability.pxd ├── probability.pyx ├── probability.so ├── pydai.pxd ├── pydai.pyx ├── pydai.so ├── report.py ├── samc.pyx ├── samc.so ├── simple.py ├── tail.py ├── tcga-parser.py ├── treenet.py ├── utils.cpp └── utils.py ├── tests ├── __init__.py ├── all_poisson.py ├── cov_poisson.py ├── dai_test.py ├── ex_data_0.csv ├── ex_data_1.csv ├── ex_data_predict.csv ├── example.py ├── mpm_yousef.py ├── poisson.py ├── poisson_synth.py ├── test_class.py ├── test_net.py ├── test_poisson.py ├── test_simple.py ├── test_tree.py └── treevbnet.py ├── waf └── wscript /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/binarybana/samcnet/HEAD/.gitignore -------------------------------------------------------------------------------- /.gitmodules: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/binarybana/samcnet/HEAD/.gitmodules -------------------------------------------------------------------------------- /LICENSE.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/binarybana/samcnet/HEAD/LICENSE.md 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