├── 1
    ├── ctd
    │   ├── bio2rdf_ctd_sio_mapping.owl
    │   ├── bio2rdf_ctd_vocabulary.owl
    │   └── catalog-v001.xml
    ├── geneid
    │   ├── bio2rdf_geneid_sio_mapping.owl
    │   ├── bio2rdf_geneid_vocabulary.owl
    │   └── catalog-v001.xml
    ├── goa
    │   ├── bio2rdf_goa_sio_mapping.owl
    │   ├── bio2rdf_goa_vocabulary.owl
    │   └── catalog-v001.xml
    ├── hgnc
    │   ├── bio2rdf_hgnc_sio_mapping.owl
    │   ├── bio2rdf_hgnc_vocabulary.owl
    │   └── catalog-v001.xml
    ├── homologene
    │   ├── bio2rdf_homologene_sio_mapping.owl
    │   ├── bio2rdf_homologene_vocabulary.owl
    │   └── catalog-v001.xml
    ├── ipi
    │   ├── bio2rdf_ipi_sio_mapping.owl
    │   ├── bio2rdf_ipi_vocabulary.owl
    │   └── catalog-v001.xml
    ├── irefindex
    │   ├── bio2rdf_irefindex_sio_mapping.owl
    │   ├── bio2rdf_irefindex_vocabulary.owl
    │   └── catalog-v001.xml
    ├── mgi
    │   ├── bio2rdf_mgi_sio_mapping.owl
    │   ├── bio2rdf_mgi_vocabulary.owl
    │   └── catalog-v001.xml
    ├── pdb
    │   ├── bio2rdf_pdb_sio_mapping.owl
    │   ├── bio2rdf_pdb_vocabulary.owl
    │   └── catalog-v001.xml
    ├── pharmgkb
    │   ├── bio2rdf_pharmgkb_sio_mapping.owl
    │   ├── bio2rdf_pharmgkb_vocabulary.owl
    │   └── catalog-v001.xml
    ├── sgd
    │   ├── bio2rdf_sgd_sio_mapping.owl
    │   ├── bio2rdf_sgd_vocabulary.owl
    │   └── catalog-v001.xml
    └── unists
    │   ├── bio2rdf_unists_sio_mapping.owl
    │   ├── bio2rdf_unists_vocabulary.owl
    │   └── catalog-v001.xml
├── 2
    ├── affymetrix
    │   ├── bio2rdf_affymetrix_sio_mapping.owl
    │   ├── bio2rdf_affymetrix_vocabulary.owl
    │   └── catalog-v001.xml
    ├── biomodels
    │   ├── bio2rdf_biomodels_sio_mapping.owl
    │   ├── bio2rdf_biomodels_vocabulary.owl
    │   └── catalog-v001.xml
    ├── ctd
    │   ├── bio2rdf_ctd_sio_mapping.owl
    │   ├── bio2rdf_ctd_vocabulary.owl
    │   └── catalog-v001.xml
    ├── drugbank
    │   ├── bio2rdf_drugbank_sio_mapping.owl
    │   ├── bio2rdf_drugbank_vocabulary.owl
    │   └── catalog-v001.xml
    ├── goa
    │   ├── bio2rdf_goa_sio_mapping.owl
    │   ├── bio2rdf_goa_vocabulary.owl
    │   └── catalog-v001.xml
    ├── hgnc
    │   ├── bio2rdf_hgnc_sio_mapping.owl
    │   ├── bio2rdf_hgnc_vocabulary.owl
    │   └── catalog-v001.xml
    ├── homologene
    │   ├── bio2rdf_homologene_sio_mapping.owl
    │   ├── bio2rdf_homologene_vocabulary.owl
    │   └── catalog-v001.xml
    ├── interpro
    │   ├── bio2rdf_interpro_sio_mapping.owl
    │   ├── bio2rdf_interpro_vocabulary.owl
    │   └── catalog-v001.xml
    ├── irefindex
    │   ├── bio2rdf_irefindex_sio_mapping.owl
    │   ├── bio2rdf_irefindex_vocabulary.owl
    │   └── catalog-v001.xml
    ├── mesh
    │   ├── bio2rdf_mesh_sio_mapping.owl
    │   ├── bio2rdf_mesh_vocabulary.owl
    │   └── catalog-v001.xml
    ├── ncbo
    │   ├── bio2rdf_ncbo_vocabulary.owl
    │   └── catalog-v001.xml
    ├── ndc
    │   ├── bio2rdf_ndc_sio_mapping.owl
    │   ├── bio2rdf_ndc_vocabulary.owl
    │   └── catalog-v001.xml
    ├── omim
    │   ├── bio2rdf_omim_sio_mapping.owl
    │   ├── bio2rdf_omim_vocabulary.owl
    │   └── catalog-v001.xml
    ├── pharmgkb
    │   ├── bio2rdf_pharmgkb_sio_mapping.owl
    │   ├── bio2rdf_pharmgkb_vocabulary.owl
    │   └── catalog-v001.xml
    ├── sabiork
    │   ├── bio2rdf_sabiork_sio_mapping.owl
    │   ├── bio2rdf_sabiork_vocabulary.owl
    │   └── catalog-v001.xml
    ├── sgd
    │   ├── bio2rdf_sgd_sio_mapping.owl
    │   ├── bio2rdf_sgd_vocabulary.owl
    │   └── catalog-v001.xml
    └── taxonomy
    │   ├── bio2rdf_taxonomy_sio_mapping.owl
    │   ├── bio2rdf_taxonomy_vocabulary.owl
    │   └── catalog-v001.xml
├── 3
    ├── BroadMappings.nt
    ├── ExactandBroadMappings.ttl
    └── README
└── README


/1/ctd/bio2rdf_ctd_sio_mapping.owl:
--------------------------------------------------------------------------------
  1 | <?xml version="1.0"?>
  2 | 
  3 | 
  4 | <!DOCTYPE rdf:RDF [
  5 |     <!ENTITY terms "http://purl.org/dc/terms/" >
  6 |     <!ENTITY owl "http://www.w3.org/2002/07/owl#" >
  7 |     <!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
  8 |     <!ENTITY ctd_vocabulary "http://bio2rdf.org/ctd_vocabulary:" >
  9 |     <!ENTITY resource "http://semanticscience.org/resource/" >
 10 |     <!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
 11 |     <!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
 12 | ]>
 13 | 
 14 | 
 15 | <rdf:RDF xmlns="http://bio2rdf.org/bio2rdf_ctd_sio_mapping.owl#"
 16 |      xml:base="http://bio2rdf.org/bio2rdf_ctd_sio_mapping.owl"
 17 |      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
 18 |      xmlns:terms="http://purl.org/dc/terms/"
 19 |      xmlns:resource="http://semanticscience.org/resource/"
 20 |      xmlns:owl="http://www.w3.org/2002/07/owl#"
 21 |      xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
 22 |      xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
 23 |      xmlns:ctd_vocabulary="http://bio2rdf.org/ctd_vocabulary:">
 24 |     <owl:Ontology rdf:about="http://bio2rdf.org/bio2rdf_ctd_sio_mapping.owl">
 25 |         <owl:imports rdf:resource="http://bio2rdf.org/bio2rdf_ctd_vocabulary.owl"/>
 26 |         <owl:imports rdf:resource="http://semanticscience.org/ontology/sio.owl"/>
 27 |     </owl:Ontology>
 28 |     
 29 | 
 30 | 
 31 |     <!-- 
 32 |     ///////////////////////////////////////////////////////////////////////////////////////
 33 |     //
 34 |     // Annotation properties
 35 |     //
 36 |     ///////////////////////////////////////////////////////////////////////////////////////
 37 |      -->
 38 | 
 39 |     <rdf:Description rdf:about="&terms;creator">
 40 |         <terms:creator rdf:datatype="&xsd;Name">Alison Callahan</terms:creator>
 41 |     </rdf:Description>
 42 |     
 43 | 
 44 | 
 45 |     <!-- 
 46 |     ///////////////////////////////////////////////////////////////////////////////////////
 47 |     //
 48 |     // Datatypes
 49 |     //
 50 |     ///////////////////////////////////////////////////////////////////////////////////////
 51 |      -->
 52 | 
 53 |     
 54 | 
 55 | 
 56 |     <!-- 
 57 |     ///////////////////////////////////////////////////////////////////////////////////////
 58 |     //
 59 |     // Object Properties
 60 |     //
 61 |     ///////////////////////////////////////////////////////////////////////////////////////
 62 |      -->
 63 | 
 64 |     
 65 | 
 66 | 
 67 |     <!-- http://bio2rdf.org/ctd_vocabulary:action -->
 68 | 
 69 |     <rdf:Description rdf:about="&ctd_vocabulary;action">
 70 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 71 |     </rdf:Description>
 72 |     
 73 | 
 74 | 
 75 |     <!-- http://bio2rdf.org/ctd_vocabulary:article -->
 76 | 
 77 |     <rdf:Description rdf:about="&ctd_vocabulary;article">
 78 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 79 |     </rdf:Description>
 80 |     
 81 | 
 82 | 
 83 |     <!-- http://bio2rdf.org/ctd_vocabulary:chemical -->
 84 | 
 85 |     <rdf:Description rdf:about="&ctd_vocabulary;chemical">
 86 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 87 |     </rdf:Description>
 88 |     
 89 | 
 90 | 
 91 |     <!-- http://bio2rdf.org/ctd_vocabulary:disease -->
 92 | 
 93 |     <rdf:Description rdf:about="&ctd_vocabulary;disease">
 94 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 95 |     </rdf:Description>
 96 |     
 97 | 
 98 | 
 99 |     <!-- http://bio2rdf.org/ctd_vocabulary:gene -->
100 | 
101 |     <rdf:Description rdf:about="&ctd_vocabulary;gene">
102 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
103 |     </rdf:Description>
104 |     
105 | 
106 | 
107 |     <!-- http://bio2rdf.org/ctd_vocabulary:has-function -->
108 | 
109 |     <rdf:Description rdf:about="&ctd_vocabulary;has-function">
110 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000225"/>
111 |     </rdf:Description>
112 |     
113 | 
114 | 
115 |     <!-- http://bio2rdf.org/ctd_vocabulary:in -->
116 | 
117 |     <rdf:Description rdf:about="&ctd_vocabulary;in">
118 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000322"/>
119 |     </rdf:Description>
120 |     
121 | 
122 | 
123 |     <!-- http://bio2rdf.org/ctd_vocabulary:is-located-in -->
124 | 
125 |     <rdf:Description rdf:about="&ctd_vocabulary;is-located-in">
126 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000061"/>
127 |     </rdf:Description>
128 |     
129 | 
130 | 
131 |     <!-- http://bio2rdf.org/ctd_vocabulary:is-participant-in -->
132 | 
133 |     <rdf:Description rdf:about="&ctd_vocabulary;is-participant-in">
134 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000062"/>
135 |     </rdf:Description>
136 |     
137 | 
138 | 
139 |     <!-- http://bio2rdf.org/ctd_vocabulary:organism -->
140 | 
141 |     <rdf:Description rdf:about="&ctd_vocabulary;organism">
142 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
143 |     </rdf:Description>
144 |     
145 | 
146 | 
147 |     <!-- http://bio2rdf.org/ctd_vocabulary:pathway -->
148 | 
149 |     <rdf:Description rdf:about="&ctd_vocabulary;pathway">
150 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
151 |     </rdf:Description>
152 |     
153 | 
154 | 
155 |     <!-- http://bio2rdf.org/ctd_vocabulary:symbol -->
156 | 
157 |     <rdf:Description rdf:about="&ctd_vocabulary;symbol">
158 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
159 |     </rdf:Description>
160 |     
161 | 
162 | 
163 |     <!-- 
164 |     ///////////////////////////////////////////////////////////////////////////////////////
165 |     //
166 |     // Classes
167 |     //
168 |     ///////////////////////////////////////////////////////////////////////////////////////
169 |      -->
170 | 
171 |     
172 | 
173 | 
174 |     <!-- http://bio2rdf.org/ctd_vocabulary:Chemical -->
175 | 
176 |     <rdf:Description rdf:about="&ctd_vocabulary;Chemical">
177 |         <rdfs:subClassOf rdf:resource="&resource;SIO_010004"/>
178 |     </rdf:Description>
179 |     
180 | 
181 | 
182 |     <!-- http://bio2rdf.org/ctd_vocabulary:ChemicalDiseaseInteraction -->
183 | 
184 |     <rdf:Description rdf:about="&ctd_vocabulary;ChemicalDiseaseInteraction">
185 |         <rdfs:subClassOf rdf:resource="&resource;SIO_000593"/>
186 |     </rdf:Description>
187 |     
188 | 
189 | 
190 |     <!-- http://bio2rdf.org/ctd_vocabulary:ChemicalGeneInteraction -->
191 | 
192 |     <rdf:Description rdf:about="&ctd_vocabulary;ChemicalGeneInteraction">
193 |         <rdfs:subClassOf rdf:resource="&resource;SIO_000593"/>
194 |     </rdf:Description>
195 |     
196 | 
197 | 
198 |     <!-- http://bio2rdf.org/ctd_vocabulary:Disease -->
199 | 
200 |     <rdf:Description rdf:about="&ctd_vocabulary;Disease">
201 |         <rdfs:subClassOf rdf:resource="&resource;SIO_010299"/>
202 |     </rdf:Description>
203 | </rdf:RDF>
204 | 
205 | 
206 | 
207 | <!-- Generated by the OWL API (version 3.2.3.1824) http://owlapi.sourceforge.net -->
208 | 
209 | 


--------------------------------------------------------------------------------
/1/ctd/bio2rdf_ctd_vocabulary.owl:
--------------------------------------------------------------------------------
  1 | <?xml version="1.0"?>
  2 | 
  3 | 
  4 | <!DOCTYPE rdf:RDF [
  5 |     <!ENTITY terms "http://purl.org/dc/terms/" >
  6 |     <!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
  7 |     <!ENTITY ctd_vocabulary "http://bio2rdf.org/ctd_vocabulary:" >
  8 |     <!ENTITY resource "http://semanticscience.org/resource/" >
  9 |     <!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
 10 |     <!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
 11 | ]>
 12 | 
 13 | 
 14 | <rdf:RDF xmlns="http://www.w3.org/2002/07/owl#"
 15 |      xml:base="http://www.w3.org/2002/07/owl"
 16 |      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
 17 |      xmlns:terms="http://purl.org/dc/terms/"
 18 |      xmlns:resource="http://semanticscience.org/resource/"
 19 |      xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
 20 |      xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
 21 |      xmlns:ctd_vocabulary="http://bio2rdf.org/ctd_vocabulary:">
 22 |     <Ontology rdf:about="http://bio2rdf.org/bio2rdf_ctd_vocabulary.owl">
 23 |         <terms:creator rdf:datatype="&xsd;Name">Alison Callahan</terms:creator>
 24 |     </Ontology>
 25 |     
 26 | 
 27 | 
 28 |     <!-- 
 29 |     ///////////////////////////////////////////////////////////////////////////////////////
 30 |     //
 31 |     // Annotation properties
 32 |     //
 33 |     ///////////////////////////////////////////////////////////////////////////////////////
 34 |      -->
 35 | 
 36 |     
 37 | 
 38 | 
 39 |     <!-- 
 40 |     ///////////////////////////////////////////////////////////////////////////////////////
 41 |     //
 42 |     // Object Properties
 43 |     //
 44 |     ///////////////////////////////////////////////////////////////////////////////////////
 45 |      -->
 46 | 
 47 |     
 48 | 
 49 | 
 50 |     <!-- http://bio2rdf.org/ctd_vocabulary:action -->
 51 | 
 52 |     <ObjectProperty rdf:about="&ctd_vocabulary;action">
 53 |     </ObjectProperty>
 54 |     
 55 | 
 56 | 
 57 |     <!-- http://bio2rdf.org/ctd_vocabulary:article -->
 58 | 
 59 |     <ObjectProperty rdf:about="&ctd_vocabulary;article">
 60 |     </ObjectProperty>
 61 |     
 62 | 
 63 | 
 64 |     <!-- http://bio2rdf.org/ctd_vocabulary:chemical -->
 65 | 
 66 |     <ObjectProperty rdf:about="&ctd_vocabulary;chemical">
 67 |     </ObjectProperty>
 68 |     
 69 | 
 70 | 
 71 |     <!-- http://bio2rdf.org/ctd_vocabulary:disease -->
 72 | 
 73 |     <ObjectProperty rdf:about="&ctd_vocabulary;disease">
 74 |     </ObjectProperty>
 75 |     
 76 | 
 77 | 
 78 |     <!-- http://bio2rdf.org/ctd_vocabulary:gene -->
 79 | 
 80 |     <ObjectProperty rdf:about="&ctd_vocabulary;gene">
 81 |     </ObjectProperty>
 82 |     
 83 | 
 84 | 
 85 |     <!-- http://bio2rdf.org/ctd_vocabulary:has-function -->
 86 | 
 87 |     <ObjectProperty rdf:about="&ctd_vocabulary;has-function">
 88 |     </ObjectProperty>
 89 |     
 90 | 
 91 | 
 92 |     <!-- http://bio2rdf.org/ctd_vocabulary:in -->
 93 | 
 94 |     <ObjectProperty rdf:about="&ctd_vocabulary;in">
 95 |     </ObjectProperty>
 96 |     
 97 | 
 98 | 
 99 |     <!-- http://bio2rdf.org/ctd_vocabulary:is-located-in -->
100 | 
101 |     <ObjectProperty rdf:about="&ctd_vocabulary;is-located-in">
102 |     </ObjectProperty>
103 |     
104 | 
105 | 
106 |     <!-- http://bio2rdf.org/ctd_vocabulary:is-participant-in -->
107 | 
108 |     <ObjectProperty rdf:about="&ctd_vocabulary;is-participant-in">
109 |     </ObjectProperty>
110 |     
111 | 
112 | 
113 |     <!-- http://bio2rdf.org/ctd_vocabulary:organism -->
114 | 
115 |     <ObjectProperty rdf:about="&ctd_vocabulary;organism">
116 |     </ObjectProperty>
117 |     
118 | 
119 | 
120 |     <!-- http://bio2rdf.org/ctd_vocabulary:pathway -->
121 | 
122 |     <ObjectProperty rdf:about="&ctd_vocabulary;pathway">
123 | 
124 |     </ObjectProperty>
125 |     
126 | 
127 | 
128 |     <!-- http://bio2rdf.org/ctd_vocabulary:symbol -->
129 | 
130 |     <ObjectProperty rdf:about="&ctd_vocabulary;symbol">
131 | 
132 |     </ObjectProperty>
133 | 
134 | 
135 |     <!-- 
136 |     ///////////////////////////////////////////////////////////////////////////////////////
137 |     //
138 |     // Classes
139 |     //
140 |     ///////////////////////////////////////////////////////////////////////////////////////
141 |      -->
142 | 
143 |     
144 | 
145 | 
146 |     <!-- http://bio2rdf.org/ctd_vocabulary:Chemical -->
147 | 
148 |     <Class rdf:about="&ctd_vocabulary;Chemical">
149 |     </Class>
150 |     
151 | 
152 | 
153 |     <!-- http://bio2rdf.org/ctd_vocabulary:ChemicalDiseaseInteraction -->
154 | 
155 |     <Class rdf:about="&ctd_vocabulary;ChemicalDiseaseInteraction">
156 |     </Class>
157 |     
158 | 
159 | 
160 |     <!-- http://bio2rdf.org/ctd_vocabulary:ChemicalGeneInteraction -->
161 | 
162 |     <Class rdf:about="&ctd_vocabulary;ChemicalGeneInteraction">
163 |     </Class>
164 |     
165 | 
166 | 
167 |     <!-- http://bio2rdf.org/ctd_vocabulary:Disease -->
168 | 
169 |     <Class rdf:about="&ctd_vocabulary;Disease">
170 |     </Class>
171 | 
172 | </rdf:RDF>
173 | 
174 | 
175 | 
176 | <!-- Generated by the OWL API (version 3.2.3.1824) http://owlapi.sourceforge.net -->
177 | 
178 | 


--------------------------------------------------------------------------------
/1/ctd/catalog-v001.xml:
--------------------------------------------------------------------------------
1 | <?xml version="1.0" encoding="UTF-8" standalone="no"?>
2 | <catalog prefer="public" xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog">
3 |     <uri id="Imports Wizard Entry" name="http://bio2rdf.org/bio2rdf_ctd_vocabulary.owl" uri="bio2rdf_ctd_vocabulary.owl"/>
4 |     <group id="Folder Repository, directory=, recursive=true, Auto-Update=true, version=2" prefer="public" xml:base="">
5 |         <uri id="Automatically generated entry, Timestamp=1350049971305" name="http://bio2rdf.org/bio2rdf_ctd_sio_mapping.owl" uri="bio2rdf_ctd_sio_mapping.owl"/>
6 |         <uri id="Automatically generated entry, Timestamp=1350049971305" name="http://www.w3.org/2002/07/owl" uri="bio2rdf_ctd_vocabulary.owl"/>
7 |     </group>
8 | </catalog>
9 | 


--------------------------------------------------------------------------------
/1/geneid/catalog-v001.xml:
--------------------------------------------------------------------------------
1 | <?xml version="1.0" encoding="UTF-8" standalone="no"?>
2 | <catalog prefer="public" xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog">
3 |     <uri id="Imports Wizard Entry" name="http://bio2rdf.org/bio2rdf_geneid_vocabulary.owl" uri="bio2rdf_geneid_vocabulary.owl"/>
4 |     <group id="Folder Repository, directory=, recursive=true, Auto-Update=true, version=2" prefer="public" xml:base="">
5 |         <uri id="Automatically generated entry, Timestamp=1334848339217" name="http://www.bio2rdf.org/bio2rdf_geneid_sio_mapping.owl" uri="bio2rdf_geneid_sio_mapping.owl"/>
6 |         <uri id="Automatically generated entry, Timestamp=1334848339217" name="duplicate:http://www.w3.org/2002/07/owl" uri="bio2rdf_geneid_vocabulary.owl"/>
7 |     </group>
8 | </catalog>
9 | 


--------------------------------------------------------------------------------
/1/goa/bio2rdf_goa_sio_mapping.owl:
--------------------------------------------------------------------------------
  1 | <?xml version="1.0"?>
  2 | 
  3 | 
  4 | <!DOCTYPE rdf:RDF [
  5 |     <!ENTITY owl "http://www.w3.org/2002/07/owl#" >
  6 |     <!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
  7 |     <!ENTITY goa_vocabulary "http://bio2rdf.org/goa_vocabulary:" >
  8 |     <!ENTITY resource "http://semanticscience.org/resource/" >
  9 |     <!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
 10 |     <!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
 11 | ]>
 12 | 
 13 | 
 14 | <rdf:RDF xmlns="http://www.bio2rdf.org/bio2rdf_goa_sio_mapping.owl#"
 15 |      xml:base="http://www.bio2rdf.org/bio2rdf_goa_sio_mapping.owl"
 16 |      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
 17 |      xmlns:resource="http://semanticscience.org/resource/"
 18 |      xmlns:owl="http://www.w3.org/2002/07/owl#"
 19 |      xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
 20 |      xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
 21 |      xmlns:goa_vocabulary="http://bio2rdf.org/goa_vocabulary:">
 22 |     <owl:Ontology rdf:about="http://www.bio2rdf.org/bio2rdf_goa_sio_mapping.owl">
 23 |         <owl:imports rdf:resource="http://bio2rdf.org/bio2rdf_goa_vocabulary.owl"/>
 24 |         <owl:imports rdf:resource="http://semanticscience.org/ontology/sio.owl"/>
 25 |     </owl:Ontology>
 26 |     
 27 | 
 28 | 
 29 |     <!-- 
 30 |     ///////////////////////////////////////////////////////////////////////////////////////
 31 |     //
 32 |     // Annotation properties
 33 |     //
 34 |     ///////////////////////////////////////////////////////////////////////////////////////
 35 |      -->
 36 | 
 37 |     
 38 | 
 39 | 
 40 |     <!-- 
 41 |     ///////////////////////////////////////////////////////////////////////////////////////
 42 |     //
 43 |     // Datatypes
 44 |     //
 45 |     ///////////////////////////////////////////////////////////////////////////////////////
 46 |      -->
 47 | 
 48 |     
 49 | 
 50 | 
 51 |     <!-- 
 52 |     ///////////////////////////////////////////////////////////////////////////////////////
 53 |     //
 54 |     // Object Properties
 55 |     //
 56 |     ///////////////////////////////////////////////////////////////////////////////////////
 57 |      -->
 58 | 
 59 |     
 60 | 
 61 | 
 62 |     <!-- http://bio2rdf.org/goa_vocabulary:has_alternative_symbol -->
 63 | 
 64 |     <rdf:Description rdf:about="&goa_vocabulary;has_alternative_symbol">
 65 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 66 |     </rdf:Description>
 67 |     
 68 | 
 69 | 
 70 |     <!-- http://bio2rdf.org/goa_vocabulary:has_annotation -->
 71 | 
 72 |     <rdf:Description rdf:about="&goa_vocabulary;has_annotation">
 73 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000255"/>
 74 |     </rdf:Description>
 75 |     
 76 | 
 77 | 
 78 |     <!-- http://bio2rdf.org/goa_vocabulary:has_aspect_label -->
 79 | 
 80 |     <rdf:Description rdf:about="&goa_vocabulary;has_aspect_label">
 81 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 82 |     </rdf:Description>
 83 |     
 84 | 
 85 | 
 86 |     <!-- http://bio2rdf.org/goa_vocabulary:has_evidence_code -->
 87 | 
 88 |     <rdf:Description rdf:about="&goa_vocabulary;has_evidence_code">
 89 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 90 |     </rdf:Description>
 91 |     
 92 | 
 93 | 
 94 |     <!-- http://bio2rdf.org/goa_vocabulary:has_evidence_code_type -->
 95 | 
 96 |     <rdf:Description rdf:about="&goa_vocabulary;has_evidence_code_type">
 97 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 98 |     </rdf:Description>
 99 |     
100 | 
101 | 
102 |     <!-- http://bio2rdf.org/goa_vocabulary:has_gene_product -->
103 | 
104 |     <rdf:Description rdf:about="&goa_vocabulary;has_gene_product">
105 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
106 |     </rdf:Description>
107 |     
108 | 
109 | 
110 |     <!-- http://bio2rdf.org/goa_vocabulary:has_qualifier -->
111 | 
112 |     <rdf:Description rdf:about="&goa_vocabulary;has_qualifier">
113 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
114 |     </rdf:Description>
115 |     
116 | 
117 | 
118 |     <!-- http://bio2rdf.org/goa_vocabulary:has_source -->
119 | 
120 |     <rdf:Description rdf:about="&goa_vocabulary;has_source">
121 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
122 |     </rdf:Description>
123 |     
124 | 
125 | 
126 |     <!-- http://bio2rdf.org/goa_vocabulary:has_synonym -->
127 | 
128 |     <rdf:Description rdf:about="&goa_vocabulary;has_synonym">
129 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
130 |     </rdf:Description>
131 |     
132 | 
133 | 
134 |     <!-- http://bio2rdf.org/goa_vocabulary:has_taxid -->
135 | 
136 |     <rdf:Description rdf:about="&goa_vocabulary;has_taxid">
137 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
138 |     </rdf:Description>
139 |     
140 | 
141 | 
142 |     <!-- 
143 |     ///////////////////////////////////////////////////////////////////////////////////////
144 |     //
145 |     // Annotations
146 |     //
147 |     ///////////////////////////////////////////////////////////////////////////////////////
148 |      -->
149 | 
150 |     <rdf:Description rdf:about="http://purl.org/dc/terms/creator">
151 |         <rdfs:comment rdf:datatype="&xsd;Name">Alison Callahan</rdfs:comment>
152 |     </rdf:Description>
153 | </rdf:RDF>
154 | 
155 | 
156 | 
157 | <!-- Generated by the OWL API (version 3.2.3.1824) http://owlapi.sourceforge.net -->
158 | 
159 | 


--------------------------------------------------------------------------------
/1/goa/bio2rdf_goa_vocabulary.owl:
--------------------------------------------------------------------------------
  1 | <?xml version="1.0"?>
  2 | 
  3 | 
  4 | <!DOCTYPE rdf:RDF [
  5 |     <!ENTITY terms "http://purl.org/dc/terms/" >
  6 |     <!ENTITY owl "http://www.w3.org/2002/07/owl#" >
  7 |     <!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
  8 |     <!ENTITY goa_vocabulary "http://bio2rdf.org/goa_vocabulary:" >
  9 |     <!ENTITY resource "http://semanticscience.org/resource/" >
 10 |     <!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
 11 |     <!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
 12 | ]>
 13 | 
 14 | 
 15 | <rdf:RDF xmlns="http://www.w3.org/2002/07/owl#"
 16 |      xml:base="http://www.w3.org/2002/07/owl"
 17 |      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
 18 |      xmlns:terms="http://purl.org/dc/terms/"
 19 |      xmlns:resource="http://semanticscience.org/resource/"
 20 |      xmlns:owl="http://www.w3.org/2002/07/owl#"
 21 |      xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
 22 |      xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
 23 |      xmlns:goa_vocabulary="http://bio2rdf.org/goa_vocabulary:">
 24 |     <Ontology rdf:about="http://bio2rdf.org/bio2rdf_goa_vocabulary.owl">
 25 |         <terms:creator rdf:datatype="&xsd;Name">Alison Callahan</terms:creator>
 26 |     </Ontology>
 27 |     
 28 | 
 29 | 
 30 |     <!-- 
 31 |     ///////////////////////////////////////////////////////////////////////////////////////
 32 |     //
 33 |     // Annotation properties
 34 |     //
 35 |     ///////////////////////////////////////////////////////////////////////////////////////
 36 |      -->
 37 | 
 38 |     
 39 | 
 40 | 
 41 |     <!-- 
 42 |     ///////////////////////////////////////////////////////////////////////////////////////
 43 |     //
 44 |     // Object Properties
 45 |     //
 46 |     ///////////////////////////////////////////////////////////////////////////////////////
 47 |      -->
 48 | 
 49 |     
 50 | 
 51 | 
 52 |     <!-- http://bio2rdf.org/goa_vocabulary:has_alternative_symbol -->
 53 | 
 54 |     <ObjectProperty rdf:about="&goa_vocabulary;has_alternative_symbol">
 55 |     </ObjectProperty>
 56 |     
 57 | 
 58 | 
 59 |     <!-- http://bio2rdf.org/goa_vocabulary:has_annotation -->
 60 | 
 61 |     <ObjectProperty rdf:about="&goa_vocabulary;has_annotation">
 62 |     </ObjectProperty>
 63 |     
 64 | 
 65 | 
 66 |     <!-- http://bio2rdf.org/goa_vocabulary:has_aspect_label -->
 67 | 
 68 |     <ObjectProperty rdf:about="&goa_vocabulary;has_aspect_label">
 69 |     </ObjectProperty>
 70 |     
 71 | 
 72 | 
 73 |     <!-- http://bio2rdf.org/goa_vocabulary:has_evidence_code -->
 74 | 
 75 |     <ObjectProperty rdf:about="&goa_vocabulary;has_evidence_code">
 76 |     </ObjectProperty>
 77 |     
 78 | 
 79 | 
 80 |     <!-- http://bio2rdf.org/goa_vocabulary:has_evidence_code_type -->
 81 | 
 82 |     <ObjectProperty rdf:about="&goa_vocabulary;has_evidence_code_type">
 83 |     </ObjectProperty>
 84 |     
 85 | 
 86 | 
 87 |     <!-- http://bio2rdf.org/goa_vocabulary:has_gene_product -->
 88 | 
 89 |     <ObjectProperty rdf:about="&goa_vocabulary;has_gene_product">
 90 |     </ObjectProperty>
 91 |     
 92 | 
 93 | 
 94 |     <!-- http://bio2rdf.org/goa_vocabulary:has_qualifier -->
 95 | 
 96 |     <ObjectProperty rdf:about="&goa_vocabulary;has_qualifier">
 97 |     </ObjectProperty>
 98 |     
 99 | 
100 | 
101 |     <!-- http://bio2rdf.org/goa_vocabulary:has_source -->
102 | 
103 |     <ObjectProperty rdf:about="&goa_vocabulary;has_source">
104 |     </ObjectProperty>
105 |     
106 | 
107 | 
108 |     <!-- http://bio2rdf.org/goa_vocabulary:has_synonym -->
109 | 
110 |     <ObjectProperty rdf:about="&goa_vocabulary;has_synonym">
111 |     </ObjectProperty>
112 |     
113 | 
114 | 
115 |     <!-- http://bio2rdf.org/goa_vocabulary:has_taxid -->
116 | 
117 |     <ObjectProperty rdf:about="&goa_vocabulary;has_taxid">
118 |     </ObjectProperty>
119 |     
120 | 
121 | 
122 |     <!-- http://semanticscience.org/resource/SIO_000255 -->
123 | 
124 |     <rdf:Description rdf:about="&resource;SIO_000255"/>
125 | </rdf:RDF>
126 | 
127 | 
128 | 
129 | <!-- Generated by the OWL API (version 3.2.3.1824) http://owlapi.sourceforge.net -->
130 | 
131 | 


--------------------------------------------------------------------------------
/1/goa/catalog-v001.xml:
--------------------------------------------------------------------------------
1 | <?xml version="1.0" encoding="UTF-8" standalone="no"?>
2 | <catalog prefer="public" xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog">
3 |     <uri id="Imports Wizard Entry" name="http://bio2rdf.org/bio2rdf_goa_vocabulary.owl" uri="bio2rdf_goa_vocabulary.owl"/>
4 |     <group id="Folder Repository, directory=, recursive=true, Auto-Update=true, version=2" prefer="public" xml:base="">
5 |         <uri id="Automatically generated entry, Timestamp=1340288596084" name="http://www.bio2rdf.org/bio2rdf_goa_sio_mapping.owl" uri="bio2rdf_goa_sio_mapping.owl"/>
6 |         <uri id="Automatically generated entry, Timestamp=1340288596084" name="http://www.w3.org/2002/07/owl" uri="bio2rdf_goa_vocabulary.owl"/>
7 |     </group>
8 | </catalog>
9 | 


--------------------------------------------------------------------------------
/1/hgnc/catalog-v001.xml:
--------------------------------------------------------------------------------
1 | <?xml version="1.0" encoding="UTF-8" standalone="no"?>
2 | <catalog prefer="public" xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog">
3 |     <uri id="Imports Wizard Entry" name="http://bio2rdf.org/bio2rdf_hgnc_vocabulary.owl" uri="bio2rdf_hgnc_vocabulary.owl"/>
4 |     <group id="Folder Repository, directory=, recursive=true, Auto-Update=true, version=2" prefer="public" xml:base="">
5 |         <uri id="Automatically generated entry, Timestamp=1334849655004" name="duplicate:http://www.w3.org/2002/07/owl" uri="bio2rdf_hgnc_vocabulary.owl"/>
6 |     </group>
7 | </catalog>
8 | 


--------------------------------------------------------------------------------
/1/homologene/bio2rdf_homologene_sio_mapping.owl:
--------------------------------------------------------------------------------
  1 | <?xml version="1.0"?>
  2 | 
  3 | 
  4 | <!DOCTYPE rdf:RDF [
  5 |     <!ENTITY terms "http://purl.org/dc/terms/" >
  6 |     <!ENTITY owl "http://www.w3.org/2002/07/owl#" >
  7 |     <!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
  8 |     <!ENTITY resource "http://semanticscience.org/resource/" >
  9 |     <!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
 10 |     <!ENTITY homologene_vocabulary "http://bio2rdf.org/homologene_vocabulary:" >
 11 |     <!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
 12 | ]>
 13 | 
 14 | 
 15 | <rdf:RDF xmlns="http://www.bio2rdf.org/bio2rdf_homologene_sio_mapping.owl#"
 16 |      xml:base="http://www.bio2rdf.org/bio2rdf_homologene_sio_mapping.owl"
 17 |      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
 18 |      xmlns:terms="http://purl.org/dc/terms/"
 19 |      xmlns:resource="http://semanticscience.org/resource/"
 20 |      xmlns:owl="http://www.w3.org/2002/07/owl#"
 21 |      xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
 22 |      xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
 23 |      xmlns:homologene_vocabulary="http://bio2rdf.org/homologene_vocabulary:">
 24 |     <owl:Ontology rdf:about="http://www.bio2rdf.org/bio2rdf_homologene_sio_mapping.owl">
 25 |         <terms:creator rdf:datatype="&xsd;Name">Alison Callahan</terms:creator>
 26 |         <owl:imports rdf:resource="http://bio2rdf.org/bio2rdf_homologene_vocabulary.owl"/>
 27 |         <owl:imports rdf:resource="http://semanticscience.org/ontology/sio.owl"/>
 28 |     </owl:Ontology>
 29 |     
 30 | 
 31 | 
 32 |     <!-- 
 33 |     ///////////////////////////////////////////////////////////////////////////////////////
 34 |     //
 35 |     // Annotation properties
 36 |     //
 37 |     ///////////////////////////////////////////////////////////////////////////////////////
 38 |      -->
 39 | 
 40 |     
 41 | 
 42 | 
 43 |     <!-- 
 44 |     ///////////////////////////////////////////////////////////////////////////////////////
 45 |     //
 46 |     // Object Properties
 47 |     //
 48 |     ///////////////////////////////////////////////////////////////////////////////////////
 49 |      -->
 50 | 
 51 |     
 52 | 
 53 | 
 54 |     <!-- http://bio2rdf.org/homologene_vocabulary:has_geneSymbol -->
 55 | 
 56 |     <rdf:Description rdf:about="&homologene_vocabulary;has_geneSymbol">
 57 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 58 |     </rdf:Description>
 59 |     
 60 | 
 61 | 
 62 |     <!-- http://bio2rdf.org/homologene_vocabulary:has_geneid -->
 63 | 
 64 |     <rdf:Description rdf:about="&homologene_vocabulary;has_geneid">
 65 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 66 |     </rdf:Description>
 67 |     
 68 | 
 69 | 
 70 |     <!-- http://bio2rdf.org/homologene_vocabulary:has_gi -->
 71 | 
 72 |     <rdf:Description rdf:about="&homologene_vocabulary;has_gi">
 73 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 74 |     </rdf:Description>
 75 |     
 76 | 
 77 | 
 78 |     <!-- http://bio2rdf.org/homologene_vocabulary:has_refseq -->
 79 | 
 80 |     <rdf:Description rdf:about="&homologene_vocabulary;has_refseq">
 81 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 82 |     </rdf:Description>
 83 |     
 84 | 
 85 | 
 86 |     <!-- http://bio2rdf.org/homologene_vocabulary:has_taxid -->
 87 | 
 88 |     <rdf:Description rdf:about="&homologene_vocabulary;has_taxid">
 89 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 90 |     </rdf:Description>
 91 |     
 92 | 
 93 | 
 94 |     <!-- 
 95 |     ///////////////////////////////////////////////////////////////////////////////////////
 96 |     //
 97 |     // Classes
 98 |     //
 99 |     ///////////////////////////////////////////////////////////////////////////////////////
100 |      -->
101 | 
102 |     
103 | 
104 | 
105 |     <!-- http://bio2rdf.org/homologene_vocabulary:HomoloGene_Group -->
106 | 
107 |     <rdf:Description rdf:about="&homologene_vocabulary;HomoloGene_Group">
108 |         <rdfs:subClassOf rdf:resource="&resource;SIO_000616"/>
109 |     </rdf:Description>
110 | </rdf:RDF>
111 | 
112 | 
113 | 
114 | <!-- Generated by the OWL API (version 3.2.3.1824) http://owlapi.sourceforge.net -->
115 | 
116 | 


--------------------------------------------------------------------------------
/1/homologene/bio2rdf_homologene_vocabulary.owl:
--------------------------------------------------------------------------------
  1 | <?xml version="1.0"?>
  2 | 
  3 | 
  4 | <!DOCTYPE rdf:RDF [
  5 |     <!ENTITY terms "http://purl.org/dc/terms/" >
  6 |     <!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
  7 |     <!ENTITY resource "http://semanticscience.org/resource/" >
  8 |     <!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
  9 |     <!ENTITY homologene_vocabulary "http://bio2rdf.org/homologene_vocabulary:" >
 10 |     <!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
 11 | ]>
 12 | 
 13 | 
 14 | <rdf:RDF xmlns="http://www.w3.org/2002/07/owl#"
 15 |      xml:base="http://www.w3.org/2002/07/owl"
 16 |      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
 17 |      xmlns:terms="http://purl.org/dc/terms/"
 18 |      xmlns:resource="http://semanticscience.org/resource/"
 19 |      xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
 20 |      xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
 21 |      xmlns:homologene_vocabulary="http://bio2rdf.org/homologene_vocabulary:">
 22 |     <Ontology rdf:about="http://bio2rdf.org/bio2rdf_homologene_vocabulary.owl">
 23 |         <terms:creator>Jose Cruz-Toledo</terms:creator>
 24 |     </Ontology>
 25 |     
 26 | 
 27 | 
 28 |     <!-- 
 29 |     ///////////////////////////////////////////////////////////////////////////////////////
 30 |     //
 31 |     // Annotation properties
 32 |     //
 33 |     ///////////////////////////////////////////////////////////////////////////////////////
 34 |      -->
 35 | 
 36 |     
 37 | 
 38 | 
 39 |     <!-- 
 40 |     ///////////////////////////////////////////////////////////////////////////////////////
 41 |     //
 42 |     // Object Properties
 43 |     //
 44 |     ///////////////////////////////////////////////////////////////////////////////////////
 45 |      -->
 46 | 
 47 |     
 48 | 
 49 | 
 50 |     <!-- http://bio2rdf.org/homologene_vocabulary:has_geneSymbol -->
 51 | 
 52 |     <ObjectProperty rdf:about="&homologene_vocabulary;has_geneSymbol">
 53 |     </ObjectProperty>
 54 |     
 55 | 
 56 | 
 57 |     <!-- http://bio2rdf.org/homologene_vocabulary:has_geneid -->
 58 | 
 59 |     <ObjectProperty rdf:about="&homologene_vocabulary;has_geneid">
 60 | 
 61 |     </ObjectProperty>
 62 |     
 63 | 
 64 | 
 65 |     <!-- http://bio2rdf.org/homologene_vocabulary:has_gi -->
 66 | 
 67 |     <ObjectProperty rdf:about="&homologene_vocabulary;has_gi">
 68 | 
 69 |     </ObjectProperty>
 70 |     
 71 | 
 72 | 
 73 |     <!-- http://bio2rdf.org/homologene_vocabulary:has_refseq -->
 74 | 
 75 |     <ObjectProperty rdf:about="&homologene_vocabulary;has_refseq">
 76 | 
 77 |     </ObjectProperty>
 78 |     
 79 | 
 80 | 
 81 |     <!-- http://bio2rdf.org/homologene_vocabulary:has_taxid -->
 82 | 
 83 |     <ObjectProperty rdf:about="&homologene_vocabulary;has_taxid">
 84 | 
 85 |     </ObjectProperty>
 86 |     
 87 | 
 88 | 
 89 |     <!-- 
 90 |     ///////////////////////////////////////////////////////////////////////////////////////
 91 |     //
 92 |     // Classes
 93 |     //
 94 |     ///////////////////////////////////////////////////////////////////////////////////////
 95 |      -->
 96 | 
 97 |     
 98 | 
 99 | 
100 |     <!-- http://bio2rdf.org/homologene_vocabulary:HomoloGene_Group -->
101 | 
102 |     <Class rdf:about="&homologene_vocabulary;HomoloGene_Group">
103 | 
104 |     </Class>
105 | </rdf:RDF>
106 | 
107 | 
108 | 
109 | <!-- Generated by the OWL API (version 3.2.3.1824) http://owlapi.sourceforge.net -->
110 | 
111 | 


--------------------------------------------------------------------------------
/1/homologene/catalog-v001.xml:
--------------------------------------------------------------------------------
1 | <?xml version="1.0" encoding="UTF-8" standalone="no"?>
2 | <catalog prefer="public" xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog">
3 |     <uri id="Imports Wizard Entry" name="http://bio2rdf.org/bio2rdf_homologene_vocabulary.owl" uri="bio2rdf_homologene_vocabulary.owl"/>
4 |     <group id="Folder Repository, directory=, recursive=true, Auto-Update=true, version=2" prefer="public" xml:base="">
5 |         <uri id="Automatically generated entry, Timestamp=1334852943231" name="duplicate:http://www.w3.org/2002/07/owl" uri="bio2rdf_homologene_vocabulary.owl"/>
6 |     </group>
7 | </catalog>
8 | 


--------------------------------------------------------------------------------
/1/ipi/bio2rdf_ipi_sio_mapping.owl:
--------------------------------------------------------------------------------
 1 | <?xml version="1.0"?>
 2 | 
 3 | 
 4 | <!DOCTYPE rdf:RDF [
 5 |     <!ENTITY terms "http://purl.org/dc/terms/" >
 6 |     <!ENTITY owl "http://www.w3.org/2002/07/owl#" >
 7 |     <!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
 8 |     <!ENTITY ipi_vocabulary "http://bio2rdf.org/ipi_vocabulary:" >
 9 |     <!ENTITY resource "http://semanticscience.org/resource/" >
10 |     <!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
11 |     <!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
12 | ]>
13 | 
14 | 
15 | <rdf:RDF xmlns="http://www.bio2rdf.org/bio2rdf_ipi_sio_mapping.owl#"
16 |      xml:base="http://www.bio2rdf.org/bio2rdf_ipi_sio_mapping.owl"
17 |      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
18 |      xmlns:terms="http://purl.org/dc/terms/"
19 |      xmlns:ipi_vocabulary="http://bio2rdf.org/ipi_vocabulary:"
20 |      xmlns:resource="http://semanticscience.org/resource/"
21 |      xmlns:owl="http://www.w3.org/2002/07/owl#"
22 |      xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
23 |      xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
24 |     <owl:Ontology rdf:about="http://www.bio2rdf.org/bio2rdf_ipi_sio_mapping.owl">
25 |         <terms:creator rdf:datatype="&xsd;Name">Alison Callahan</terms:creator>
26 |         <owl:imports rdf:resource="http://bio2rdf.org/bio2rdf_ipi_vocabulary.owl"/>
27 |         <owl:imports rdf:resource="http://semanticscience.org/ontology/sio.owl"/>
28 |     </owl:Ontology>
29 |     
30 | 
31 | 
32 |     <!-- 
33 |     ///////////////////////////////////////////////////////////////////////////////////////
34 |     //
35 |     // Annotation properties
36 |     //
37 |     ///////////////////////////////////////////////////////////////////////////////////////
38 |      -->
39 | 
40 |     
41 | 
42 | 
43 |     <!-- 
44 |     ///////////////////////////////////////////////////////////////////////////////////////
45 |     //
46 |     // Object Properties
47 |     //
48 |     ///////////////////////////////////////////////////////////////////////////////////////
49 |      -->
50 | 
51 |     
52 | 
53 | 
54 |     <!-- http://bio2rdf.org/ipi_vocabulary:has_genbank_id -->
55 | 
56 |     <rdf:Description rdf:about="&ipi_vocabulary;has_genbank_id">
57 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000671"/>
58 |     </rdf:Description>
59 |     
60 | 
61 | 
62 |     <!-- http://bio2rdf.org/ipi_vocabulary:has_mgi_id -->
63 | 
64 |     <rdf:Description rdf:about="&ipi_vocabulary;has_mgi_id">
65 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000671"/>
66 |     </rdf:Description>
67 |     
68 | 
69 | 
70 |     <!-- http://bio2rdf.org/ipi_vocabulary:has_refseq_id -->
71 | 
72 |     <rdf:Description rdf:about="&ipi_vocabulary;has_refseq_id">
73 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000671"/>
74 |     </rdf:Description>
75 |     
76 | 
77 | 
78 |     <!-- http://bio2rdf.org/ipi_vocabulary:has_rgd_id -->
79 | 
80 |     <rdf:Description rdf:about="&ipi_vocabulary;has_rgd_id">
81 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000671"/>
82 |     </rdf:Description>
83 | </rdf:RDF>
84 | 
85 | 
86 | 
87 | <!-- Generated by the OWL API (version 3.2.3.1824) http://owlapi.sourceforge.net -->
88 | 
89 | 


--------------------------------------------------------------------------------
/1/ipi/bio2rdf_ipi_vocabulary.owl:
--------------------------------------------------------------------------------
 1 | <?xml version="1.0"?>
 2 | 
 3 | 
 4 | <!DOCTYPE rdf:RDF [
 5 |     <!ENTITY terms "http://purl.org/dc/terms/" >
 6 |     <!ENTITY owl "http://www.w3.org/2002/07/owl#" >
 7 |     <!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
 8 |     <!ENTITY ipi_vocabulary "http://bio2rdf.org/ipi_vocabulary:" >
 9 |     <!ENTITY resource "http://semanticscience.org/resource/" >
10 |     <!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
11 |     <!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
12 | ]>
13 | 
14 | 
15 | <rdf:RDF xmlns="http://www.w3.org/2002/07/owl#"
16 |      xml:base="http://www.w3.org/2002/07/owl"
17 |      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
18 |      xmlns:terms="http://purl.org/dc/terms/"
19 |      xmlns:ipi_vocabulary="http://bio2rdf.org/ipi_vocabulary:"
20 |      xmlns:resource="http://semanticscience.org/resource/"
21 |      xmlns:owl="http://www.w3.org/2002/07/owl#"
22 |      xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
23 |      xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
24 |     <Ontology rdf:about="http://bio2rdf.org/bio2rdf_ipi_vocabulary.owl">
25 |         <terms:creator rdf:datatype="&xsd;Name">Alison Callahan</terms:creator>
26 |     </Ontology>
27 |     
28 | 
29 | 
30 |     <!-- 
31 |     ///////////////////////////////////////////////////////////////////////////////////////
32 |     //
33 |     // Annotation properties
34 |     //
35 |     ///////////////////////////////////////////////////////////////////////////////////////
36 |      -->
37 | 
38 |     
39 | 
40 | 
41 |     <!-- 
42 |     ///////////////////////////////////////////////////////////////////////////////////////
43 |     //
44 |     // Object Properties
45 |     //
46 |     ///////////////////////////////////////////////////////////////////////////////////////
47 |      -->
48 | 
49 |     
50 | 
51 | 
52 |     <!-- http://bio2rdf.org/ipi_vocabulary:has_genbank_id -->
53 | 
54 |     <ObjectProperty rdf:about="&ipi_vocabulary;has_genbank_id">
55 |     </ObjectProperty>
56 |     
57 | 
58 | 
59 |     <!-- http://bio2rdf.org/ipi_vocabulary:has_mgi_id -->
60 | 
61 |     <ObjectProperty rdf:about="&ipi_vocabulary;has_mgi_id">
62 |     </ObjectProperty>
63 |     
64 | 
65 | 
66 |     <!-- http://bio2rdf.org/ipi_vocabulary:has_refseq_id -->
67 | 
68 |     <ObjectProperty rdf:about="&ipi_vocabulary;has_refseq_id">
69 |     </ObjectProperty>
70 |     
71 | 
72 | 
73 |     <!-- http://bio2rdf.org/ipi_vocabulary:has_rgd_id -->
74 | 
75 |     <ObjectProperty rdf:about="&ipi_vocabulary;has_rgd_id">
76 |     </ObjectProperty>
77 | </rdf:RDF>
78 | 
79 | 
80 | 
81 | <!-- Generated by the OWL API (version 3.2.3.1824) http://owlapi.sourceforge.net -->
82 | 
83 | 


--------------------------------------------------------------------------------
/1/ipi/catalog-v001.xml:
--------------------------------------------------------------------------------
1 | <?xml version="1.0" encoding="UTF-8" standalone="no"?>
2 | <catalog prefer="public" xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog">
3 |     <uri id="Imports Wizard Entry" name="http://bio2rdf.org/bio2rdf_ipi_vocabulary.owl" uri="bio2rdf_ipi_vocabulary.owl"/>
4 |     <uri id="Imports Wizard Entry" name="http://bio2rdf.org/bio2rdf_ipi_mapping.owl" uri="bio2rdf_ipi_vocabulary.owl"/>
5 |     <group id="Folder Repository, directory=, recursive=true, Auto-Update=true, version=2" prefer="public" xml:base="">
6 |         <uri id="Automatically generated entry, Timestamp=1334853556666" name="duplicate:http://www.w3.org/2002/07/owl" uri="bio2rdf_ipi_vocabulary.owl"/>
7 |     </group>
8 | </catalog>
9 | 


--------------------------------------------------------------------------------
/1/irefindex/catalog-v001.xml:
--------------------------------------------------------------------------------
1 | <?xml version="1.0" encoding="UTF-8" standalone="no"?>
2 | <catalog prefer="public" xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog">
3 |     <uri id="Imports Wizard Entry" name="http://bio2rdf.org/bio2rdf_irefindex_vocabulary.owl" uri="bio2rdf_irefindex_vocabulary.owl"/>
4 |     <group id="Folder Repository, directory=, recursive=true, Auto-Update=true, version=2" prefer="public" xml:base="">
5 |         <uri id="Automatically generated entry, Timestamp=1334853901695" name="duplicate:http://www.w3.org/2002/07/owl" uri="bio2rdf_irefindex_vocabulary.owl"/>
6 |     </group>
7 | </catalog>
8 | 


--------------------------------------------------------------------------------
/1/mgi/bio2rdf_mgi_sio_mapping.owl:
--------------------------------------------------------------------------------
  1 | <?xml version="1.0"?>
  2 | 
  3 | 
  4 | <!DOCTYPE rdf:RDF [
  5 |     <!ENTITY terms "http://purl.org/dc/terms/" >
  6 |     <!ENTITY owl "http://www.w3.org/2002/07/owl#" >
  7 |     <!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
  8 |     <!ENTITY mgi_vocabulary "http://bio2rdf.org/mgi_vocabulary:" >
  9 |     <!ENTITY resource "http://semanticscience.org/resource/" >
 10 |     <!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
 11 |     <!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
 12 | ]>
 13 | 
 14 | 
 15 | <rdf:RDF xmlns="http://bio2rdf.org/bio2rdf_mgi_sio_mapping.owl#"
 16 |      xml:base="http://bio2rdf.org/bio2rdf_mgi_sio_mapping.owl"
 17 |      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
 18 |      xmlns:terms="http://purl.org/dc/terms/"
 19 |      xmlns:resource="http://semanticscience.org/resource/"
 20 |      xmlns:owl="http://www.w3.org/2002/07/owl#"
 21 |      xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
 22 |      xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
 23 |      xmlns:mgi_vocabulary="http://bio2rdf.org/mgi_vocabulary:">
 24 |     <owl:Ontology rdf:about="http://bio2rdf.org/bio2rdf_mgi_sio_mapping.owl">
 25 |         <terms:creator rdf:datatype="&xsd;Name">Alison Callahan</terms:creator>
 26 |         <owl:imports rdf:resource="http://bio2rdf.org/bio2rdf_mgi_vocabulary.owl"/>
 27 |         <owl:imports rdf:resource="http://semanticscience.org/ontology/sio.owl"/>
 28 |     </owl:Ontology>
 29 |     
 30 | 
 31 | 
 32 |     <!-- 
 33 |     ///////////////////////////////////////////////////////////////////////////////////////
 34 |     //
 35 |     // Annotation properties
 36 |     //
 37 |     ///////////////////////////////////////////////////////////////////////////////////////
 38 |      -->
 39 | 
 40 |     
 41 | 
 42 | 
 43 |     <!-- 
 44 |     ///////////////////////////////////////////////////////////////////////////////////////
 45 |     //
 46 |     // Object Properties
 47 |     //
 48 |     ///////////////////////////////////////////////////////////////////////////////////////
 49 |      -->
 50 | 
 51 |     
 52 | 
 53 | 
 54 |     <!-- http://bio2rdf.org/mgi_vocabulary:chromosomePosition -->
 55 | 
 56 |     <rdf:Description rdf:about="&mgi_vocabulary;chromosomePosition">
 57 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 58 |     </rdf:Description>
 59 |     
 60 | 
 61 | 
 62 |     <!-- http://bio2rdf.org/mgi_vocabulary:genomeEnd -->
 63 | 
 64 |     <rdf:Description rdf:about="&mgi_vocabulary;genomeEnd">
 65 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 66 |     </rdf:Description>
 67 |     
 68 | 
 69 | 
 70 |     <!-- http://bio2rdf.org/mgi_vocabulary:genomeStart -->
 71 | 
 72 |     <rdf:Description rdf:about="&mgi_vocabulary;genomeStart">
 73 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 74 |     </rdf:Description>
 75 |     
 76 | 
 77 | 
 78 |     <!-- http://bio2rdf.org/mgi_vocabulary:genomeStrand -->
 79 | 
 80 |     <rdf:Description rdf:about="&mgi_vocabulary;genomeStrand">
 81 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 82 |     </rdf:Description>
 83 |     
 84 | 
 85 | 
 86 |     <!-- http://bio2rdf.org/mgi_vocabulary:image -->
 87 | 
 88 |     <rdf:Description rdf:about="&mgi_vocabulary;image">
 89 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 90 |     </rdf:Description>
 91 |     
 92 | 
 93 | 
 94 |     <!-- http://bio2rdf.org/mgi_vocabulary:subType -->
 95 | 
 96 |     <rdf:Description rdf:about="&mgi_vocabulary;subType">
 97 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 98 |     </rdf:Description>
 99 |     
100 | 
101 | 
102 |     <!-- http://bio2rdf.org/mgi_vocabulary:symbol -->
103 | 
104 |     <rdf:Description rdf:about="&mgi_vocabulary;symbol">
105 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
106 |     </rdf:Description>
107 |     
108 | 
109 | 
110 |     <!-- http://bio2rdf.org/mgi_vocabulary:synonym -->
111 | 
112 |     <rdf:Description rdf:about="&mgi_vocabulary;synonym">
113 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
114 |     </rdf:Description>
115 |     
116 | 
117 | 
118 |     <!-- http://bio2rdf.org/mgi_vocabulary:url -->
119 | 
120 |     <rdf:Description rdf:about="&mgi_vocabulary;url">
121 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
122 |     </rdf:Description>
123 |     
124 | 
125 | 
126 |     <!-- http://bio2rdf.org/mgi_vocabulary:xChromosome -->
127 | 
128 |     <rdf:Description rdf:about="&mgi_vocabulary;xChromosome">
129 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
130 |     </rdf:Description>
131 |     
132 | 
133 | 
134 |     <!-- http://bio2rdf.org/mgi_vocabulary:xENSEMBL -->
135 | 
136 |     <rdf:Description rdf:about="&mgi_vocabulary;xENSEMBL">
137 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000671"/>
138 |     </rdf:Description>
139 |     
140 | 
141 | 
142 |     <!-- http://bio2rdf.org/mgi_vocabulary:xGO -->
143 | 
144 |     <rdf:Description rdf:about="&mgi_vocabulary;xGO">
145 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000671"/>
146 |     </rdf:Description>
147 |     
148 | 
149 | 
150 |     <!-- http://bio2rdf.org/mgi_vocabulary:xGene -->
151 | 
152 |     <rdf:Description rdf:about="&mgi_vocabulary;xGene">
153 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
154 |     </rdf:Description>
155 |     
156 | 
157 | 
158 |     <!-- http://bio2rdf.org/mgi_vocabulary:xGeneID -->
159 | 
160 |     <rdf:Description rdf:about="&mgi_vocabulary;xGeneID">
161 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000671"/>
162 |     </rdf:Description>
163 |     
164 | 
165 | 
166 |     <!-- http://bio2rdf.org/mgi_vocabulary:xHGNC -->
167 | 
168 |     <rdf:Description rdf:about="&mgi_vocabulary;xHGNC">
169 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000671"/>
170 |     </rdf:Description>
171 |     
172 | 
173 | 
174 |     <!-- http://bio2rdf.org/mgi_vocabulary:xInterPro -->
175 | 
176 |     <rdf:Description rdf:about="&mgi_vocabulary;xInterPro">
177 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000671"/>
178 |     </rdf:Description>
179 |     
180 | 
181 | 
182 |     <!-- http://bio2rdf.org/mgi_vocabulary:xLocus -->
183 | 
184 |     <rdf:Description rdf:about="&mgi_vocabulary;xLocus">
185 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
186 |     </rdf:Description>
187 |     
188 | 
189 | 
190 |     <!-- http://bio2rdf.org/mgi_vocabulary:xSymbol -->
191 | 
192 |     <rdf:Description rdf:about="&mgi_vocabulary;xSymbol">
193 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
194 |     </rdf:Description>
195 |     
196 | 
197 | 
198 |     <!-- http://bio2rdf.org/mgi_vocabulary:xUniProt -->
199 | 
200 |     <rdf:Description rdf:about="&mgi_vocabulary;xUniProt">
201 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000671"/>
202 |     </rdf:Description>
203 |     
204 | 
205 | 
206 |     <!-- 
207 |     ///////////////////////////////////////////////////////////////////////////////////////
208 |     //
209 |     // Classes
210 |     //
211 |     ///////////////////////////////////////////////////////////////////////////////////////
212 |      -->
213 | 
214 |     
215 | 
216 | 
217 |     <!-- http://bio2rdf.org/mgi_vocabulary:Marker -->
218 | 
219 |     <rdf:Description rdf:about="&mgi_vocabulary;Marker">
220 |         <rdfs:subClassOf rdf:resource="&resource;SIO_010444"/>
221 |     </rdf:Description>
222 |     
223 | 
224 | 
225 |     <!-- http://bio2rdf.org/mgi_vocabulary:Symbol -->
226 | 
227 |     <rdf:Description rdf:about="&mgi_vocabulary;Symbol">
228 |         <rdfs:subClassOf rdf:resource="&resource;SIO_000105"/>
229 |     </rdf:Description>
230 | </rdf:RDF>
231 | 
232 | 
233 | 
234 | <!-- Generated by the OWL API (version 3.2.3.1824) http://owlapi.sourceforge.net -->
235 | 
236 | 


--------------------------------------------------------------------------------
/1/mgi/bio2rdf_mgi_vocabulary.owl:
--------------------------------------------------------------------------------
  1 | <?xml version="1.0"?>
  2 | 
  3 | 
  4 | <!DOCTYPE rdf:RDF [
  5 |     <!ENTITY terms "http://purl.org/dc/terms/" >
  6 |     <!ENTITY owl "http://www.w3.org/2002/07/owl#" >
  7 |     <!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
  8 |     <!ENTITY mgi_vocabulary "http://bio2rdf.org/mgi_vocabulary:" >
  9 |     <!ENTITY resource "http://semanticscience.org/resource/" >
 10 |     <!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
 11 |     <!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
 12 | ]>
 13 | 
 14 | 
 15 | <rdf:RDF xmlns="http://www.w3.org/2002/07/owl#"
 16 |      xml:base="http://www.w3.org/2002/07/owl"
 17 |      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
 18 |      xmlns:terms="http://purl.org/dc/terms/"
 19 |      xmlns:resource="http://semanticscience.org/resource/"
 20 |      xmlns:owl="http://www.w3.org/2002/07/owl#"
 21 |      xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
 22 |      xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
 23 |      xmlns:mgi_vocabulary="http://bio2rdf.org/mgi_vocabulary:">
 24 |     <Ontology rdf:about="http://bio2rdf.org/bio2rdf_mgi_vocabulary.owl">
 25 |         <terms:creator rdf:datatype="&xsd;Name">Alison Callahan</terms:creator>
 26 |     </Ontology>
 27 |     
 28 | 
 29 | 
 30 |     <!-- 
 31 |     ///////////////////////////////////////////////////////////////////////////////////////
 32 |     //
 33 |     // Annotation properties
 34 |     //
 35 |     ///////////////////////////////////////////////////////////////////////////////////////
 36 |      -->
 37 | 
 38 |     
 39 | 
 40 | 
 41 |     <!-- 
 42 |     ///////////////////////////////////////////////////////////////////////////////////////
 43 |     //
 44 |     // Object Properties
 45 |     //
 46 |     ///////////////////////////////////////////////////////////////////////////////////////
 47 |      -->
 48 | 
 49 |     
 50 | 
 51 | 
 52 |     <!-- http://bio2rdf.org/mgi_vocabulary:chromosomePosition -->
 53 | 
 54 |     <ObjectProperty rdf:about="&mgi_vocabulary;chromosomePosition">
 55 | 
 56 |     </ObjectProperty>
 57 |     
 58 | 
 59 | 
 60 |     <!-- http://bio2rdf.org/mgi_vocabulary:genomeEnd -->
 61 | 
 62 |     <ObjectProperty rdf:about="&mgi_vocabulary;genomeEnd">
 63 | 
 64 |     </ObjectProperty>
 65 |     
 66 | 
 67 | 
 68 |     <!-- http://bio2rdf.org/mgi_vocabulary:genomeStart -->
 69 | 
 70 |     <ObjectProperty rdf:about="&mgi_vocabulary;genomeStart">
 71 | 
 72 |     </ObjectProperty>
 73 |     
 74 | 
 75 | 
 76 |     <!-- http://bio2rdf.org/mgi_vocabulary:genomeStrand -->
 77 | 
 78 |     <ObjectProperty rdf:about="&mgi_vocabulary;genomeStrand">
 79 | 
 80 |     </ObjectProperty>
 81 |     
 82 | 
 83 | 
 84 |     <!-- http://bio2rdf.org/mgi_vocabulary:image -->
 85 | 
 86 |     <ObjectProperty rdf:about="&mgi_vocabulary;image">
 87 | 
 88 |     </ObjectProperty>
 89 |     
 90 | 
 91 | 
 92 |     <!-- http://bio2rdf.org/mgi_vocabulary:subType -->
 93 | 
 94 |     <ObjectProperty rdf:about="&mgi_vocabulary;subType">
 95 | 
 96 |     </ObjectProperty>
 97 |     
 98 | 
 99 | 
100 |     <!-- http://bio2rdf.org/mgi_vocabulary:symbol -->
101 | 
102 |     <ObjectProperty rdf:about="&mgi_vocabulary;symbol">
103 | 
104 |     </ObjectProperty>
105 |     
106 | 
107 | 
108 |     <!-- http://bio2rdf.org/mgi_vocabulary:synonym -->
109 | 
110 |     <ObjectProperty rdf:about="&mgi_vocabulary;synonym">
111 | 
112 |     </ObjectProperty>
113 |     
114 | 
115 | 
116 |     <!-- http://bio2rdf.org/mgi_vocabulary:url -->
117 | 
118 |     <ObjectProperty rdf:about="&mgi_vocabulary;url">
119 | 
120 |     </ObjectProperty>
121 |     
122 | 
123 | 
124 |     <!-- http://bio2rdf.org/mgi_vocabulary:xChromosome -->
125 | 
126 |     <ObjectProperty rdf:about="&mgi_vocabulary;xChromosome">
127 | 
128 |     </ObjectProperty>
129 |     
130 | 
131 | 
132 |     <!-- http://bio2rdf.org/mgi_vocabulary:xENSEMBL -->
133 | 
134 |     <ObjectProperty rdf:about="&mgi_vocabulary;xENSEMBL">
135 | 
136 |     </ObjectProperty>
137 |     
138 | 
139 | 
140 |     <!-- http://bio2rdf.org/mgi_vocabulary:xGO -->
141 | 
142 |     <ObjectProperty rdf:about="&mgi_vocabulary;xGO">
143 | 
144 |     </ObjectProperty>
145 |     
146 | 
147 | 
148 |     <!-- http://bio2rdf.org/mgi_vocabulary:xGene -->
149 | 
150 |     <ObjectProperty rdf:about="&mgi_vocabulary;xGene">
151 | 
152 |     </ObjectProperty>
153 |     
154 | 
155 | 
156 |     <!-- http://bio2rdf.org/mgi_vocabulary:xGeneID -->
157 | 
158 |     <ObjectProperty rdf:about="&mgi_vocabulary;xGeneID">
159 | 
160 |     </ObjectProperty>
161 |     
162 | 
163 | 
164 |     <!-- http://bio2rdf.org/mgi_vocabulary:xHGNC -->
165 | 
166 |     <ObjectProperty rdf:about="&mgi_vocabulary;xHGNC">
167 | 
168 |     </ObjectProperty>
169 |     
170 | 
171 | 
172 |     <!-- http://bio2rdf.org/mgi_vocabulary:xInterPro -->
173 | 
174 |     <ObjectProperty rdf:about="&mgi_vocabulary;xInterPro">
175 | 
176 |     </ObjectProperty>
177 |     
178 | 
179 | 
180 |     <!-- http://bio2rdf.org/mgi_vocabulary:xLocus -->
181 | 
182 |     <ObjectProperty rdf:about="&mgi_vocabulary;xLocus">
183 | 
184 |     </ObjectProperty>
185 |     
186 | 
187 | 
188 |     <!-- http://bio2rdf.org/mgi_vocabulary:xSymbol -->
189 | 
190 |     <ObjectProperty rdf:about="&mgi_vocabulary;xSymbol">
191 | 
192 |     </ObjectProperty>
193 |     
194 | 
195 | 
196 |     <!-- http://bio2rdf.org/mgi_vocabulary:xUniProt -->
197 | 
198 |     <ObjectProperty rdf:about="&mgi_vocabulary;xUniProt">
199 | 
200 |     </ObjectProperty>
201 |     
202 | 
203 | 
204 |     <!-- 
205 |     ///////////////////////////////////////////////////////////////////////////////////////
206 |     //
207 |     // Classes
208 |     //
209 |     ///////////////////////////////////////////////////////////////////////////////////////
210 |      -->
211 | 
212 |     
213 | 
214 | 
215 |     <!-- http://bio2rdf.org/mgi_vocabulary:Marker -->
216 | 
217 |     <Class rdf:about="&mgi_vocabulary;Marker">
218 | 
219 |     </Class>
220 |     
221 | 
222 | 
223 |     <!-- http://bio2rdf.org/mgi_vocabulary:Symbol -->
224 | 
225 |     <Class rdf:about="&mgi_vocabulary;Symbol">
226 | 
227 |     </Class>
228 | </rdf:RDF>
229 | 
230 | 
231 | 
232 | <!-- Generated by the OWL API (version 3.2.3.1824) http://owlapi.sourceforge.net -->
233 | 
234 | 


--------------------------------------------------------------------------------
/1/mgi/catalog-v001.xml:
--------------------------------------------------------------------------------
1 | <?xml version="1.0" encoding="UTF-8" standalone="no"?>
2 | <catalog prefer="public" xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog">
3 |     <uri id="Imports Wizard Entry" name="http://bio2rdf.org/bio2rdf_mgi_vocabulary.owl" uri="bio2rdf_mgi_vocabulary.owl"/>
4 |     <group id="Folder Repository, directory=, recursive=true, Auto-Update=true, version=2" prefer="public" xml:base="">
5 |         <uri id="Automatically generated entry, Timestamp=1334855881858" name="duplicate:http://www.w3.org/2002/07/owl" uri="bio2rdf_mgi_vocabulary.owl"/>
6 |     </group>
7 | </catalog>
8 | 


--------------------------------------------------------------------------------
/1/pdb/catalog-v001.xml:
--------------------------------------------------------------------------------
 1 | <?xml version="1.0" encoding="UTF-8" standalone="no"?>
 2 | <catalog prefer="public" xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog">
 3 |     <uri id="Imports Wizard Entry" name="http://bio2rdf.org/pdb_vocabulary.owl" uri="bio2rdf_pdb_vocabulary.owl"/>
 4 |     <uri id="Imports Wizard Entry" name="http://bio2rdf.org/pdb_vocabulary:" uri="bio2rdf_pdb_vocabulary.owl"/>
 5 |     <group id="Folder Repository, directory=, recursive=true, Auto-Update=true, version=2" prefer="public" xml:base="">
 6 |         <uri id="Automatically generated entry, Timestamp=1340289958029" name="http://www.bio2rdf.org/bio2rdf_pdb_sio_mapping.owl" uri="bio2rdf_pdb_sio_mapping.owl"/>
 7 |         <uri id="Automatically generated entry, Timestamp=1340289958029" name="http://www.w3.org/2002/07/owl" uri="bio2rdf_pdb_vocabulary.owl"/>
 8 |     </group>
 9 | </catalog>
10 | 


--------------------------------------------------------------------------------
/1/pharmgkb/bio2rdf_pharmgkb_sio_mapping.owl:
--------------------------------------------------------------------------------
  1 | <?xml version="1.0"?>
  2 | 
  3 | 
  4 | <!DOCTYPE rdf:RDF [
  5 |     <!ENTITY terms "http://purl.org/dc/terms/" >
  6 |     <!ENTITY owl "http://www.w3.org/2002/07/owl#" >
  7 |     <!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
  8 |     <!ENTITY resource "http://semanticscience.org/resource/" >
  9 |     <!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
 10 |     <!ENTITY pharmgkb_vocabulary "http://bio2rdf.org/pharmgkb_vocabulary:" >
 11 |     <!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
 12 | ]>
 13 | 
 14 | 
 15 | <rdf:RDF xmlns="http://www.bio2rdf.org/bio2rdf_pharmgkb_sio_mapping.owl#"
 16 |      xml:base="http://www.bio2rdf.org/bio2rdf_pharmgkb_sio_mapping.owl"
 17 |      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
 18 |      xmlns:pharmgkb_vocabulary="http://bio2rdf.org/pharmgkb_vocabulary:"
 19 |      xmlns:terms="http://purl.org/dc/terms/"
 20 |      xmlns:resource="http://semanticscience.org/resource/"
 21 |      xmlns:owl="http://www.w3.org/2002/07/owl#"
 22 |      xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
 23 |      xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
 24 |     <owl:Ontology rdf:about="http://www.bio2rdf.org/bio2rdf_pharmgkb_sio_mapping.owl">
 25 |         <terms:creator rdf:datatype="&xsd;Name">Alison Callahan</terms:creator>
 26 |         <owl:imports rdf:resource="http://bio2rdf.org/bio2rdf_pharmgkb_vocabulary.owl"/>
 27 |         <owl:imports rdf:resource="http://semanticscience.org/ontology/sio.owl"/>
 28 |     </owl:Ontology>
 29 |     
 30 | 
 31 | 
 32 |     <!-- 
 33 |     ///////////////////////////////////////////////////////////////////////////////////////
 34 |     //
 35 |     // Annotation properties
 36 |     //
 37 |     ///////////////////////////////////////////////////////////////////////////////////////
 38 |      -->
 39 | 
 40 |     
 41 | 
 42 | 
 43 |     <!-- 
 44 |     ///////////////////////////////////////////////////////////////////////////////////////
 45 |     //
 46 |     // Object Properties
 47 |     //
 48 |     ///////////////////////////////////////////////////////////////////////////////////////
 49 |      -->
 50 | 
 51 |     
 52 | 
 53 | 
 54 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:alternate_symbol -->
 55 | 
 56 |     <rdf:Description rdf:about="&pharmgkb_vocabulary;alternate_symbol">
 57 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 58 |     </rdf:Description>
 59 |     
 60 | 
 61 | 
 62 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:brand_mixture -->
 63 | 
 64 |     <rdf:Description rdf:about="&pharmgkb_vocabulary;brand_mixture">
 65 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 66 |     </rdf:Description>
 67 |     
 68 | 
 69 | 
 70 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:drug_class -->
 71 | 
 72 |     <rdf:Description rdf:about="&pharmgkb_vocabulary;drug_class">
 73 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 74 |     </rdf:Description>
 75 |     
 76 | 
 77 | 
 78 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:entity -->
 79 | 
 80 |     <rdf:Description rdf:about="&pharmgkb_vocabulary;entity">
 81 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 82 |     </rdf:Description>
 83 |     
 84 | 
 85 | 
 86 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:evidence -->
 87 | 
 88 |     <rdf:Description rdf:about="&pharmgkb_vocabulary;evidence">
 89 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000772"/>
 90 |     </rdf:Description>
 91 |     
 92 | 
 93 | 
 94 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:evidence_type -->
 95 | 
 96 |     <rdf:Description rdf:about="&pharmgkb_vocabulary;evidence_type">
 97 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 98 |     </rdf:Description>
 99 |     
100 | 
101 | 
102 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:gene -->
103 | 
104 |     <rdf:Description rdf:about="&pharmgkb_vocabulary;gene">
105 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000671"/>
106 |     </rdf:Description>
107 |     
108 | 
109 | 
110 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:generic_name -->
111 | 
112 |     <rdf:Description rdf:about="&pharmgkb_vocabulary;generic_name">
113 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
114 |     </rdf:Description>
115 |     
116 | 
117 | 
118 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:is_genotyped -->
119 | 
120 |     <rdf:Description rdf:about="&pharmgkb_vocabulary;is_genotyped">
121 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
122 |     </rdf:Description>
123 |     
124 | 
125 | 
126 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:is_vip -->
127 | 
128 |     <rdf:Description rdf:about="&pharmgkb_vocabulary;is_vip">
129 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
130 |     </rdf:Description>
131 |     
132 | 
133 | 
134 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:name -->
135 | 
136 |     <rdf:Description rdf:about="&pharmgkb_vocabulary;name">
137 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
138 |     </rdf:Description>
139 |     
140 | 
141 | 
142 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:pharmacodynamic_association -->
143 | 
144 |     <rdf:Description rdf:about="&pharmgkb_vocabulary;pharmacodynamic_association">
145 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
146 |     </rdf:Description>
147 |     
148 | 
149 | 
150 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:pharmacodynamics -->
151 | 
152 |     <rdf:Description rdf:about="&pharmgkb_vocabulary;pharmacodynamics">
153 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
154 |     </rdf:Description>
155 |     
156 | 
157 | 
158 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:pharmacokinetics -->
159 | 
160 |     <rdf:Description rdf:about="&pharmgkb_vocabulary;pharmacokinetics">
161 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
162 |     </rdf:Description>
163 |     
164 | 
165 | 
166 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:symbol -->
167 | 
168 |     <rdf:Description rdf:about="&pharmgkb_vocabulary;symbol">
169 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000671"/>
170 |     </rdf:Description>
171 |     
172 | 
173 | 
174 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:synonym -->
175 | 
176 |     <rdf:Description rdf:about="&pharmgkb_vocabulary;synonym">
177 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
178 |     </rdf:Description>
179 |     
180 | 
181 | 
182 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:trade_name -->
183 | 
184 |     <rdf:Description rdf:about="&pharmgkb_vocabulary;trade_name">
185 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
186 |     </rdf:Description>
187 |     
188 | 
189 | 
190 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:variant_annotation -->
191 | 
192 |     <rdf:Description rdf:about="&pharmgkb_vocabulary;variant_annotation">
193 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000255"/>
194 |     </rdf:Description>
195 |     
196 | 
197 | 
198 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:xref -->
199 | 
200 |     <rdf:Description rdf:about="&pharmgkb_vocabulary;xref">
201 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000212"/>
202 |     </rdf:Description>
203 |     
204 | 
205 | 
206 |     <!-- 
207 |     ///////////////////////////////////////////////////////////////////////////////////////
208 |     //
209 |     // Classes
210 |     //
211 |     ///////////////////////////////////////////////////////////////////////////////////////
212 |      -->
213 | 
214 |     
215 | 
216 | 
217 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:Association -->
218 | 
219 |     <rdf:Description rdf:about="&pharmgkb_vocabulary;Association">
220 |         <rdfs:subClassOf rdf:resource="&resource;SIO_000897"/>
221 |     </rdf:Description>
222 |     
223 | 
224 | 
225 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:Disease -->
226 | 
227 |     <rdf:Description rdf:about="&pharmgkb_vocabulary;Disease">
228 |         <rdfs:subClassOf rdf:resource="&resource;SIO_010299"/>
229 |     </rdf:Description>
230 |     
231 | 
232 | 
233 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:Drug -->
234 | 
235 |     <rdf:Description rdf:about="&pharmgkb_vocabulary;Drug">
236 |         <rdfs:subClassOf rdf:resource="&resource;SIO_010038"/>
237 |     </rdf:Description>
238 |     
239 | 
240 | 
241 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:Gene -->
242 | 
243 |     <rdf:Description rdf:about="&pharmgkb_vocabulary;Gene">
244 |         <rdfs:subClassOf rdf:resource="&resource;SIO_010035"/>
245 |     </rdf:Description>
246 |     
247 | 
248 | 
249 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:variant -->
250 | 
251 |     <rdf:Description rdf:about="&pharmgkb_vocabulary;variant">
252 |         <rdfs:subClassOf rdf:resource="&resource;SIO_010027"/>
253 |     </rdf:Description>
254 | </rdf:RDF>
255 | 
256 | 
257 | 
258 | <!-- Generated by the OWL API (version 3.2.3.1824) http://owlapi.sourceforge.net -->
259 | 
260 | 


--------------------------------------------------------------------------------
/1/pharmgkb/bio2rdf_pharmgkb_vocabulary.owl:
--------------------------------------------------------------------------------
  1 | <?xml version="1.0"?>
  2 | 
  3 | 
  4 | <!DOCTYPE rdf:RDF [
  5 |     <!ENTITY terms "http://purl.org/dc/terms/" >
  6 |     <!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
  7 |     <!ENTITY resource "http://semanticscience.org/resource/" >
  8 |     <!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
  9 |     <!ENTITY pharmgkb_vocabulary "http://bio2rdf.org/pharmgkb_vocabulary:" >
 10 |     <!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
 11 | ]>
 12 | 
 13 | 
 14 | <rdf:RDF xmlns="http://www.w3.org/2002/07/owl#"
 15 |      xml:base="http://www.w3.org/2002/07/owl"
 16 |      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
 17 |      xmlns:pharmgkb_vocabulary="http://bio2rdf.org/pharmgkb_vocabulary:"
 18 |      xmlns:terms="http://purl.org/dc/terms/"
 19 |      xmlns:resource="http://semanticscience.org/resource/"
 20 |      xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
 21 |      xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
 22 |     <Ontology rdf:about="http://bio2rdf.org/bio2rdf_pharmgkb_vocabulary.owl">
 23 |         <terms:creator rdf:datatype="&xsd;Name">Alison Callahan</terms:creator>
 24 |     </Ontology>
 25 |     
 26 | 
 27 | 
 28 |     <!-- 
 29 |     ///////////////////////////////////////////////////////////////////////////////////////
 30 |     //
 31 |     // Annotation properties
 32 |     //
 33 |     ///////////////////////////////////////////////////////////////////////////////////////
 34 |      -->
 35 | 
 36 |     
 37 | 
 38 | 
 39 |     <!-- 
 40 |     ///////////////////////////////////////////////////////////////////////////////////////
 41 |     //
 42 |     // Object Properties
 43 |     //
 44 |     ///////////////////////////////////////////////////////////////////////////////////////
 45 |      -->
 46 | 
 47 |     
 48 | 
 49 | 
 50 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:alternate_symbol -->
 51 | 
 52 |     <ObjectProperty rdf:about="&pharmgkb_vocabulary;alternate_symbol">
 53 | 
 54 |     </ObjectProperty>
 55 |     
 56 | 
 57 | 
 58 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:brand_mixture -->
 59 | 
 60 |     <ObjectProperty rdf:about="&pharmgkb_vocabulary;brand_mixture">
 61 | 
 62 |     </ObjectProperty>
 63 |     
 64 | 
 65 | 
 66 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:drug_class -->
 67 | 
 68 |     <ObjectProperty rdf:about="&pharmgkb_vocabulary;drug_class">
 69 | 
 70 |     </ObjectProperty>
 71 |     
 72 | 
 73 | 
 74 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:entity -->
 75 | 
 76 |     <ObjectProperty rdf:about="&pharmgkb_vocabulary;entity">
 77 | 
 78 |     </ObjectProperty>
 79 |     
 80 | 
 81 | 
 82 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:evidence -->
 83 | 
 84 |     <ObjectProperty rdf:about="&pharmgkb_vocabulary;evidence">
 85 | 
 86 |     </ObjectProperty>
 87 |     
 88 | 
 89 | 
 90 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:evidence_type -->
 91 | 
 92 |     <ObjectProperty rdf:about="&pharmgkb_vocabulary;evidence_type">
 93 | 
 94 |     </ObjectProperty>
 95 |     
 96 | 
 97 | 
 98 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:gene -->
 99 | 
100 |     <ObjectProperty rdf:about="&pharmgkb_vocabulary;gene">
101 | 
102 |     </ObjectProperty>
103 |     
104 | 
105 | 
106 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:generic_name -->
107 | 
108 |     <ObjectProperty rdf:about="&pharmgkb_vocabulary;generic_name">
109 | 
110 |     </ObjectProperty>
111 |     
112 | 
113 | 
114 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:is_genotyped -->
115 | 
116 |     <ObjectProperty rdf:about="&pharmgkb_vocabulary;is_genotyped">
117 | 
118 |     </ObjectProperty>
119 |     
120 | 
121 | 
122 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:is_vip -->
123 | 
124 |     <ObjectProperty rdf:about="&pharmgkb_vocabulary;is_vip">
125 | 
126 |     </ObjectProperty>
127 |     
128 | 
129 | 
130 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:name -->
131 | 
132 |     <ObjectProperty rdf:about="&pharmgkb_vocabulary;name">
133 | 
134 |     </ObjectProperty>
135 |     
136 | 
137 | 
138 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:pharmacodynamic_association -->
139 | 
140 |     <ObjectProperty rdf:about="&pharmgkb_vocabulary;pharmacodynamic_association">
141 | 
142 |     </ObjectProperty>
143 |     
144 | 
145 | 
146 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:pharmacodynamics -->
147 | 
148 |     <ObjectProperty rdf:about="&pharmgkb_vocabulary;pharmacodynamics">
149 | 
150 |     </ObjectProperty>
151 |     
152 | 
153 | 
154 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:pharmacokinetics -->
155 | 
156 |     <ObjectProperty rdf:about="&pharmgkb_vocabulary;pharmacokinetics">
157 | 
158 |     </ObjectProperty>
159 |     
160 | 
161 | 
162 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:symbol -->
163 | 
164 |     <ObjectProperty rdf:about="&pharmgkb_vocabulary;symbol">
165 | 
166 |     </ObjectProperty>
167 |     
168 | 
169 | 
170 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:synonym -->
171 | 
172 |     <ObjectProperty rdf:about="&pharmgkb_vocabulary;synonym">
173 | 
174 |     </ObjectProperty>
175 |     
176 | 
177 | 
178 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:trade_name -->
179 | 
180 |     <ObjectProperty rdf:about="&pharmgkb_vocabulary;trade_name">
181 | 
182 |     </ObjectProperty>
183 |     
184 | 
185 | 
186 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:variant_annotation -->
187 | 
188 |     <ObjectProperty rdf:about="&pharmgkb_vocabulary;variant_annotation">
189 | 
190 |     </ObjectProperty>
191 |     
192 | 
193 | 
194 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:xref -->
195 | 
196 |     <ObjectProperty rdf:about="&pharmgkb_vocabulary;xref">
197 | 
198 |     </ObjectProperty>
199 |     
200 | 
201 | 
202 |     <!-- 
203 |     ///////////////////////////////////////////////////////////////////////////////////////
204 |     //
205 |     // Classes
206 |     //
207 |     ///////////////////////////////////////////////////////////////////////////////////////
208 |      -->
209 | 
210 |     
211 | 
212 | 
213 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:Association -->
214 | 
215 |     <Class rdf:about="&pharmgkb_vocabulary;Association">
216 |     </Class>
217 |     
218 | 
219 | 
220 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:Disease -->
221 | 
222 |     <Class rdf:about="&pharmgkb_vocabulary;Disease">
223 | 
224 |     </Class>
225 |     
226 | 
227 | 
228 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:Drug -->
229 | 
230 |     <Class rdf:about="&pharmgkb_vocabulary;Drug">
231 | 
232 |     </Class>
233 |     
234 | 
235 | 
236 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:Gene -->
237 | 
238 |     <Class rdf:about="&pharmgkb_vocabulary;Gene">
239 | 
240 |     </Class>
241 |     
242 | 
243 | 
244 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:variant -->
245 | 
246 |     <Class rdf:about="&pharmgkb_vocabulary;variant">
247 | 
248 |     </Class>
249 |     
250 | </rdf:RDF>
251 | 
252 | 
253 | 
254 | <!-- Generated by the OWL API (version 3.2.3.1824) http://owlapi.sourceforge.net -->
255 | 
256 | 


--------------------------------------------------------------------------------
/1/pharmgkb/catalog-v001.xml:
--------------------------------------------------------------------------------
1 | <?xml version="1.0" encoding="UTF-8" standalone="no"?>
2 | <catalog prefer="public" xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog">
3 |     <uri id="Imports Wizard Entry" name="http://bio2rdf.org/bio2rdf_pharmgkb_vocabulary.owl" uri="bio2rdf_pharmgkb_vocabulary.owl"/>
4 |     <group id="Folder Repository, directory=, recursive=true, Auto-Update=true, version=2" prefer="public" xml:base="">
5 |         <uri id="Automatically generated entry, Timestamp=1334856285672" name="duplicate:http://www.w3.org/2002/07/owl" uri="bio2rdf_pharmgkb_vocabulary.owl"/>
6 |     </group>
7 | </catalog>
8 | 


--------------------------------------------------------------------------------
/1/sgd/catalog-v001.xml:
--------------------------------------------------------------------------------
1 | <?xml version="1.0" encoding="UTF-8" standalone="no"?>
2 | <catalog prefer="public" xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog">
3 |     <uri id="Imports Wizard Entry" name="http://bio2rdf.org/bio2rdf_sgd_vocabulary.owl" uri="bio2rdf_sgd_vocabulary.owl"/>
4 |     <group id="Folder Repository, directory=, recursive=true, Auto-Update=true, version=2" prefer="public" xml:base="">
5 |         <uri id="Automatically generated entry, Timestamp=1340289429665" name="http://www.bio2rdf.org/bio2rdf_sgd_sio_mapping.owl" uri="bio2rdf_sgd_sio_mapping.owl"/>
6 |         <uri id="Automatically generated entry, Timestamp=1340289429665" name="http://www.w3.org/2002/07/owl" uri="bio2rdf_sgd_vocabulary.owl"/>
7 |     </group>
8 | </catalog>
9 | 


--------------------------------------------------------------------------------
/1/unists/bio2rdf_unists_sio_mapping.owl:
--------------------------------------------------------------------------------
  1 | <?xml version="1.0"?>
  2 | 
  3 | 
  4 | <!DOCTYPE rdf:RDF [
  5 |     <!ENTITY terms "http://purl.org/dc/terms/" >
  6 |     <!ENTITY owl "http://www.w3.org/2002/07/owl#" >
  7 |     <!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
  8 |     <!ENTITY resource "http://semanticscience.org/resource/" >
  9 |     <!ENTITY unists_vocabulary "http://bio2rdf.org/unists_vocabulary:" >
 10 |     <!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
 11 |     <!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
 12 | ]>
 13 | 
 14 | 
 15 | <rdf:RDF xmlns="http://www.bio2rdf.org/bio2rdf_unists_sio_mapping#"
 16 |      xml:base="http://www.bio2rdf.org/bio2rdf_unists_sio_mapping"
 17 |      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
 18 |      xmlns:terms="http://purl.org/dc/terms/"
 19 |      xmlns:resource="http://semanticscience.org/resource/"
 20 |      xmlns:owl="http://www.w3.org/2002/07/owl#"
 21 |      xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
 22 |      xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
 23 |      xmlns:unists_vocabulary="http://bio2rdf.org/unists_vocabulary:">
 24 |     <owl:Ontology rdf:about="http://www.bio2rdf.org/bio2rdf_unists_sio_mapping">
 25 |         <terms:creator rdf:datatype="&xsd;Name">Alison Callahan</terms:creator>
 26 |         <owl:imports rdf:resource="http://bio2rdf.org/bio2rdf_unists_vocabulary.owl"/>
 27 |         <owl:imports rdf:resource="http://semanticscience.org/ontology/sio.owl"/>
 28 |     </owl:Ontology>
 29 |     
 30 | 
 31 | 
 32 |     <!-- 
 33 |     ///////////////////////////////////////////////////////////////////////////////////////
 34 |     //
 35 |     // Annotation properties
 36 |     //
 37 |     ///////////////////////////////////////////////////////////////////////////////////////
 38 |      -->
 39 | 
 40 |     
 41 | 
 42 | 
 43 |     <!-- 
 44 |     ///////////////////////////////////////////////////////////////////////////////////////
 45 |     //
 46 |     // Object Properties
 47 |     //
 48 |     ///////////////////////////////////////////////////////////////////////////////////////
 49 |      -->
 50 | 
 51 |     
 52 | 
 53 | 
 54 |     <!-- http://bio2rdf.org/unists_vocabulary:chromosome -->
 55 | 
 56 |     <rdf:Description rdf:about="&unists_vocabulary;chromosome">
 57 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 58 |     </rdf:Description>
 59 |     
 60 | 
 61 | 
 62 |     <!-- http://bio2rdf.org/unists_vocabulary:position -->
 63 | 
 64 |     <rdf:Description rdf:about="&unists_vocabulary;position">
 65 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 66 |     </rdf:Description>
 67 |     
 68 | 
 69 | 
 70 |     <!-- http://bio2rdf.org/unists_vocabulary:url -->
 71 | 
 72 |     <rdf:Description rdf:about="&unists_vocabulary;url">
 73 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 74 |     </rdf:Description>
 75 |     
 76 | 
 77 | 
 78 |     <!-- http://bio2rdf.org/unists_vocabulary:xChromosome -->
 79 | 
 80 |     <rdf:Description rdf:about="&unists_vocabulary;xChromosome">
 81 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 82 |     </rdf:Description>
 83 |     
 84 | 
 85 | 
 86 |     <!-- http://bio2rdf.org/unists_vocabulary:xLocus -->
 87 | 
 88 |     <rdf:Description rdf:about="&unists_vocabulary;xLocus">
 89 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 90 |     </rdf:Description>
 91 |     
 92 | 
 93 | 
 94 |     <!-- http://bio2rdf.org/unists_vocabulary:xMarkerGroup -->
 95 | 
 96 |     <rdf:Description rdf:about="&unists_vocabulary;xMarkerGroup">
 97 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 98 |     </rdf:Description>
 99 |     
100 | 
101 | 
102 |     <!-- http://bio2rdf.org/unists_vocabulary:xTaxon -->
103 | 
104 |     <rdf:Description rdf:about="&unists_vocabulary;xTaxon">
105 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
106 |     </rdf:Description>
107 |     
108 | 
109 | 
110 |     <!-- http://bio2rdf.org/unists_vocabulary:xUniSTS -->
111 | 
112 |     <rdf:Description rdf:about="&unists_vocabulary;xUniSTS">
113 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000671"/>
114 |     </rdf:Description>
115 |     
116 | 
117 | 
118 |     <!-- 
119 |     ///////////////////////////////////////////////////////////////////////////////////////
120 |     //
121 |     // Classes
122 |     //
123 |     ///////////////////////////////////////////////////////////////////////////////////////
124 |      -->
125 | 
126 |     
127 | 
128 | 
129 |     <!-- http://bio2rdf.org/unists_vocabulary:Marker -->
130 | 
131 |     <rdf:Description rdf:about="&unists_vocabulary;Marker">
132 |         <rdfs:subClassOf rdf:resource="&resource;SIO_010444"/>
133 |     </rdf:Description>
134 |     
135 | 
136 | 
137 |     <!-- http://bio2rdf.org/unists_vocabulary:MarkerGroup -->
138 | 
139 |     <rdf:Description rdf:about="&unists_vocabulary;MarkerGroup">
140 |         <rdfs:subClassOf rdf:resource="&resource;SIO_000616"/>
141 |     </rdf:Description>
142 |     
143 | 
144 | 
145 |     <!-- http://bio2rdf.org/unists_vocabulary:MarkerName -->
146 | 
147 |     <rdf:Description rdf:about="&unists_vocabulary;MarkerName">
148 |         <rdfs:subClassOf rdf:resource="&resource;SIO_000116"/>
149 |     </rdf:Description>
150 | </rdf:RDF>
151 | 
152 | 
153 | 
154 | <!-- Generated by the OWL API (version 3.2.3.1824) http://owlapi.sourceforge.net -->
155 | 
156 | 


--------------------------------------------------------------------------------
/1/unists/bio2rdf_unists_vocabulary.owl:
--------------------------------------------------------------------------------
  1 | <?xml version="1.0"?>
  2 | 
  3 | 
  4 | <!DOCTYPE rdf:RDF [
  5 |     <!ENTITY terms "http://purl.org/dc/terms/" >
  6 |     <!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
  7 |     <!ENTITY resource "http://semanticscience.org/resource/" >
  8 |     <!ENTITY unists_vocabulary "http://bio2rdf.org/unists_vocabulary:" >
  9 |     <!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
 10 |     <!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
 11 | ]>
 12 | 
 13 | 
 14 | <rdf:RDF xmlns="http://www.w3.org/2002/07/owl#"
 15 |      xml:base="http://www.w3.org/2002/07/owl"
 16 |      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
 17 |      xmlns:terms="http://purl.org/dc/terms/"
 18 |      xmlns:resource="http://semanticscience.org/resource/"
 19 |      xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
 20 |      xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
 21 |      xmlns:unists_vocabulary="http://bio2rdf.org/unists_vocabulary:">
 22 |     <Ontology rdf:about="http://bio2rdf.org/bio2rdf_unists_vocabulary.owl">
 23 |         <terms:creator rdf:datatype="&xsd;Name">Alison Callahan</terms:creator>
 24 |     </Ontology>
 25 |     
 26 | 
 27 | 
 28 |     <!-- 
 29 |     ///////////////////////////////////////////////////////////////////////////////////////
 30 |     //
 31 |     // Annotation properties
 32 |     //
 33 |     ///////////////////////////////////////////////////////////////////////////////////////
 34 |      -->
 35 | 
 36 |     
 37 | 
 38 | 
 39 |     <!-- 
 40 |     ///////////////////////////////////////////////////////////////////////////////////////
 41 |     //
 42 |     // Object Properties
 43 |     //
 44 |     ///////////////////////////////////////////////////////////////////////////////////////
 45 |      -->
 46 | 
 47 |     
 48 | 
 49 | 
 50 |     <!-- http://bio2rdf.org/unists_vocabulary:chromosome -->
 51 | 
 52 |     <ObjectProperty rdf:about="&unists_vocabulary;chromosome">
 53 | 
 54 |     </ObjectProperty>
 55 |     
 56 | 
 57 | 
 58 |     <!-- http://bio2rdf.org/unists_vocabulary:position -->
 59 | 
 60 |     <ObjectProperty rdf:about="&unists_vocabulary;position">
 61 | 
 62 |     </ObjectProperty>
 63 |     
 64 | 
 65 | 
 66 |     <!-- http://bio2rdf.org/unists_vocabulary:url -->
 67 | 
 68 |     <ObjectProperty rdf:about="&unists_vocabulary;url">
 69 | 
 70 |     </ObjectProperty>
 71 |     
 72 | 
 73 | 
 74 |     <!-- http://bio2rdf.org/unists_vocabulary:xChromosome -->
 75 | 
 76 |     <ObjectProperty rdf:about="&unists_vocabulary;xChromosome">
 77 | 
 78 |     </ObjectProperty>
 79 |     
 80 | 
 81 | 
 82 |     <!-- http://bio2rdf.org/unists_vocabulary:xLocus -->
 83 | 
 84 |     <ObjectProperty rdf:about="&unists_vocabulary;xLocus">
 85 | 
 86 |     </ObjectProperty>
 87 |     
 88 | 
 89 | 
 90 |     <!-- http://bio2rdf.org/unists_vocabulary:xMarkerGroup -->
 91 | 
 92 |     <ObjectProperty rdf:about="&unists_vocabulary;xMarkerGroup">
 93 | 
 94 |     </ObjectProperty>
 95 |     
 96 | 
 97 | 
 98 |     <!-- http://bio2rdf.org/unists_vocabulary:xTaxon -->
 99 | 
100 |     <ObjectProperty rdf:about="&unists_vocabulary;xTaxon">
101 | 
102 |     </ObjectProperty>
103 |     
104 | 
105 | 
106 |     <!-- http://bio2rdf.org/unists_vocabulary:xUniSTS -->
107 | 
108 |     <ObjectProperty rdf:about="&unists_vocabulary;xUniSTS">
109 | 
110 |     </ObjectProperty>
111 |     
112 | 
113 | 
114 |     <!-- 
115 |     ///////////////////////////////////////////////////////////////////////////////////////
116 |     //
117 |     // Classes
118 |     //
119 |     ///////////////////////////////////////////////////////////////////////////////////////
120 |      -->
121 | 
122 |     
123 | 
124 | 
125 |     <!-- http://bio2rdf.org/unists_vocabulary:Marker -->
126 | 
127 |     <Class rdf:about="&unists_vocabulary;Marker">
128 | 
129 |     </Class>
130 |     
131 | 
132 | 
133 |     <!-- http://bio2rdf.org/unists_vocabulary:MarkerGroup -->
134 | 
135 |     <Class rdf:about="&unists_vocabulary;MarkerGroup">
136 | 
137 |     </Class>
138 |     
139 | 
140 | 
141 |     <!-- http://bio2rdf.org/unists_vocabulary:MarkerName -->
142 | 
143 |     <Class rdf:about="&unists_vocabulary;MarkerName">
144 | 
145 |     </Class>
146 | </rdf:RDF>
147 | 
148 | 
149 | 
150 | <!-- Generated by the OWL API (version 3.2.3.1824) http://owlapi.sourceforge.net -->
151 | 
152 | 


--------------------------------------------------------------------------------
/1/unists/catalog-v001.xml:
--------------------------------------------------------------------------------
1 | <?xml version="1.0" encoding="UTF-8" standalone="no"?>
2 | <catalog prefer="public" xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog">
3 |     <uri id="Imports Wizard Entry" name="http://bio2rdf.org/bio2rdf_unists_vocabulary.owl" uri="bio2rdf_unists_vocabulary.owl"/>
4 |     <group id="Folder Repository, directory=, recursive=true, Auto-Update=true, version=2" prefer="public" xml:base="">
5 |         <uri id="Automatically generated entry, Timestamp=1334857903263" name="duplicate:http://www.w3.org/2002/07/owl" uri="bio2rdf_unists_vocabulary.owl"/>
6 |     </group>
7 | </catalog>
8 | 


--------------------------------------------------------------------------------
/2/affymetrix/bio2rdf_affymetrix_sio_mapping.owl:
--------------------------------------------------------------------------------
  1 | <?xml version="1.0"?>
  2 | 
  3 | 
  4 | <!DOCTYPE rdf:RDF [
  5 |     <!ENTITY terms "http://purl.org/dc/terms/" >
  6 |     <!ENTITY owl "http://www.w3.org/2002/07/owl#" >
  7 |     <!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
  8 |     <!ENTITY resource "http://semanticscience.org/resource/" >
  9 |     <!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
 10 |     <!ENTITY affymetrix_vocabulary "http://bio2rdf.org/affymetrix_vocabulary:" >
 11 |     <!ENTITY dataset_vocabulary "http://bio2rdf.org/dataset_vocabulary:" >
 12 |     
 13 |     <!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
 14 | ]>
 15 | 
 16 | 
 17 | <rdf:RDF xmlns="http://bio2rdf.org/bio2rdf_affymetrix_sio_mapping.owl#"
 18 |      xml:base="http://bio2rdf.org/bio2rdf_affymetrix_sio_mapping.owl"
 19 |      xmlns:affymetrix_vocabulary="http://bio2rdf.org/affymetrix_vocabulary:"
 20 |      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
 21 |      xmlns:terms="http://purl.org/dc/terms/"
 22 |      xmlns:resource="http://semanticscience.org/resource/"
 23 |      xmlns:owl="http://www.w3.org/2002/07/owl#"
 24 |      xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
 25 |      xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
 26 |     <owl:Ontology rdf:about="http://bio2rdf.org/bio2rdf_affymetrix_sio_mapping.owl">
 27 |         <terms:creator rdf:datatype="&xsd;Name">Jose Cruz-Toledo</terms:creator>
 28 |         <owl:imports rdf:resource="http://bio2rdf.org/bio2rdf_affymetrix_vocabulary.owl"/>
 29 |         <owl:imports rdf:resource="http://semanticscience.org/ontology/sio.owl"/>
 30 |     </owl:Ontology>
 31 |       <!-- http://bio2rdf.org/dataset_vocabulary:Endpoint -->
 32 | 
 33 |     <owl:Class rdf:about="&dataset_vocabulary;Endpoint">
 34 |         <rdfs:subClassOf rdf:resource="&resource;SIO_000750"/>
 35 |     </owl:Class>
 36 | 
 37 | 
 38 |     <!-- 
 39 |     ///////////////////////////////////////////////////////////////////////////////////////
 40 |     //
 41 |     // Annotation properties
 42 |     //
 43 |     ///////////////////////////////////////////////////////////////////////////////////////
 44 |      -->
 45 | 
 46 |     
 47 | 
 48 | 
 49 |     <!-- 
 50 |     ///////////////////////////////////////////////////////////////////////////////////////
 51 |     //
 52 |     // Object Properties
 53 |     //
 54 |     ///////////////////////////////////////////////////////////////////////////////////////
 55 |      -->
 56 | 
 57 |     
 58 | 
 59 | 
 60 |     <!-- http://bio2rdf.org/affymetrix_vocabulary:alignments -->
 61 | 
 62 |     <rdf:Description rdf:about="&affymetrix_vocabulary;alignments">
 63 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 64 |     </rdf:Description>
 65 |     
 66 | 
 67 | 
 68 |     <!-- http://bio2rdf.org/affymetrix_vocabulary:annotation-date -->
 69 | 
 70 |     <rdf:Description rdf:about="&affymetrix_vocabulary;annotation-date">
 71 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 72 |     </rdf:Description>
 73 |     
 74 | 
 75 | 
 76 |     <!-- http://bio2rdf.org/affymetrix_vocabulary:chromosomal-location -->
 77 | 
 78 |     <rdf:Description rdf:about="&affymetrix_vocabulary;chromosomal-location">
 79 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 80 |     </rdf:Description>
 81 |     
 82 | 
 83 | 
 84 |     <!-- http://bio2rdf.org/affymetrix_vocabulary:genbank-date -->
 85 | 
 86 |     <rdf:Description rdf:about="&affymetrix_vocabulary;genbank-date">
 87 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 88 |     </rdf:Description>
 89 |     
 90 | 
 91 | 
 92 |     <!-- http://bio2rdf.org/affymetrix_vocabulary:genechip-array -->
 93 | 
 94 |     <rdf:Description rdf:about="&affymetrix_vocabulary;genechip-array">
 95 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 96 |     </rdf:Description>
 97 |     
 98 | 
 99 | 
100 |     <!-- http://bio2rdf.org/affymetrix_vocabulary:genome-species -->
101 | 
102 |     <rdf:Description rdf:about="&affymetrix_vocabulary;genome-species">
103 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
104 |     </rdf:Description>
105 |     
106 | 
107 | 
108 |     <!-- http://bio2rdf.org/affymetrix_vocabulary:genome-version-create_date -->
109 | 
110 |     <rdf:Description rdf:about="&affymetrix_vocabulary;genome-version-create_date">
111 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
112 |     </rdf:Description>
113 |     
114 | 
115 | 
116 |     <!-- http://bio2rdf.org/affymetrix_vocabulary:netaffx-annotation-tabular-format-version -->
117 | 
118 |     <rdf:Description rdf:about="&affymetrix_vocabulary;netaffx-annotation-tabular-format-version">
119 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
120 |     </rdf:Description>
121 |     
122 | 
123 | 
124 |     <!-- http://bio2rdf.org/affymetrix_vocabulary:process -->
125 | 
126 |     <rdf:Description rdf:about="&affymetrix_vocabulary;process">
127 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
128 |     </rdf:Description>
129 |     
130 | 
131 | 
132 |     <!-- http://bio2rdf.org/affymetrix_vocabulary:qtl -->
133 | 
134 |     <rdf:Description rdf:about="&affymetrix_vocabulary;qtl">
135 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
136 |     </rdf:Description>
137 |     
138 | 
139 | 
140 |     <!-- http://bio2rdf.org/affymetrix_vocabulary:refseq-version -->
141 | 
142 |     <rdf:Description rdf:about="&affymetrix_vocabulary;refseq-version">
143 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000671"/>
144 |     </rdf:Description>
145 |     
146 | 
147 | 
148 |     <!-- http://bio2rdf.org/affymetrix_vocabulary:sequence-type -->
149 | 
150 |     <rdf:Description rdf:about="&affymetrix_vocabulary;sequence-type">
151 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
152 |     </rdf:Description>
153 |     
154 | 
155 | 
156 |     <!-- http://bio2rdf.org/affymetrix_vocabulary:species-scientific-name -->
157 | 
158 |     <rdf:Description rdf:about="&affymetrix_vocabulary;species-scientific-name">
159 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
160 |     </rdf:Description>
161 |     
162 | 
163 | 
164 |     <!-- http://bio2rdf.org/affymetrix_vocabulary:x-ec -->
165 | 
166 |     <rdf:Description rdf:about="&affymetrix_vocabulary;x-ec">
167 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000671"/>
168 |     </rdf:Description>
169 |     
170 | 
171 | 
172 |     <!-- http://bio2rdf.org/affymetrix_vocabulary:x-geneid -->
173 | 
174 |     <rdf:Description rdf:about="&affymetrix_vocabulary;x-geneid">
175 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000671"/>
176 |     </rdf:Description>
177 |     
178 | 
179 | 
180 |     <!-- 
181 |     ///////////////////////////////////////////////////////////////////////////////////////
182 |     //
183 |     // Classes
184 |     //
185 |     ///////////////////////////////////////////////////////////////////////////////////////
186 |      -->
187 | 
188 |     
189 | 
190 | 
191 |     <!-- http://bio2rdf.org/affymetrix_vocabulary:Probeset -->
192 | 
193 |     <rdf:Description rdf:about="&affymetrix_vocabulary;Probeset">
194 |         <rdfs:subClassOf rdf:resource="&resource;SIO_010008"/>
195 |     </rdf:Description>
196 | </rdf:RDF>
197 | 
198 | 
199 | 
200 | <!-- Generated by the OWL API (version 3.2.3.1824) http://owlapi.sourceforge.net -->
201 | 
202 | 


--------------------------------------------------------------------------------
/2/affymetrix/bio2rdf_affymetrix_vocabulary.owl:
--------------------------------------------------------------------------------
  1 | <?xml version="1.0"?>
  2 | 
  3 | 
  4 | <!DOCTYPE rdf:RDF [
  5 |     <!ENTITY terms "http://purl.org/dc/terms/" >
  6 |     <!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
  7 |     <!ENTITY resource "http://semanticscience.org/resource/" >
  8 |     <!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
  9 |     <!ENTITY affymetrix_vocabulary "http://bio2rdf.org/affymetrix_vocabulary:" >
 10 |     <!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
 11 | ]>
 12 | 
 13 | 
 14 | <rdf:RDF xmlns="http://www.w3.org/2002/07/owl#"
 15 |      xml:base="http://www.w3.org/2002/07/owl"
 16 |      xmlns:affymetrix_vocabulary="http://bio2rdf.org/affymetrix_vocabulary:"
 17 |      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
 18 |      xmlns:terms="http://purl.org/dc/terms/"
 19 |      xmlns:resource="http://semanticscience.org/resource/"
 20 |      xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
 21 |      xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
 22 |     <Ontology rdf:about="http://bio2rdf.org/bio2rdf_affymetrix_vocabulary.owl">
 23 |         <terms:creator rdf:datatype="&xsd;Name">Jose Cruz-Toledo</terms:creator>
 24 |     </Ontology>
 25 |     
 26 | <rdf:Description rdf:about="http://bio2rdf.org/affymetrix_vocabulary:sequence-type">
 27 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
 28 |   </rdf:Description>
 29 |   <rdf:Description rdf:about="http://bio2rdf.org/affymetrix_vocabulary:alignments">
 30 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
 31 |   </rdf:Description>
 32 |   <rdf:Description rdf:about="http://bio2rdf.org/affymetrix_vocabulary:chromosomal-location">
 33 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
 34 |   </rdf:Description>
 35 |   <rdf:Description rdf:about="http://bio2rdf.org/affymetrix_vocabulary:x-geneid">
 36 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
 37 |   </rdf:Description>
 38 |   <rdf:Description rdf:about="http://bio2rdf.org/affymetrix_vocabulary:process">
 39 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
 40 |   </rdf:Description>
 41 |   <rdf:Description rdf:about="http://bio2rdf.org/affymetrix_vocabulary:genome-species">
 42 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
 43 |   </rdf:Description>
 44 |   <rdf:Description rdf:about="http://bio2rdf.org/affymetrix_vocabulary:genome-version-create_date">
 45 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
 46 |   </rdf:Description>
 47 |   <rdf:Description rdf:about="http://bio2rdf.org/affymetrix_vocabulary:genbank-date">
 48 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
 49 |   </rdf:Description>
 50 |   <rdf:Description rdf:about="http://bio2rdf.org/affymetrix_vocabulary:refseq-version">
 51 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
 52 |   </rdf:Description>
 53 |   <rdf:Description rdf:about="http://bio2rdf.org/affymetrix_vocabulary:netaffx-annotation-tabular-format-version">
 54 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
 55 |   </rdf:Description>
 56 |   <rdf:Description rdf:about="http://bio2rdf.org/affymetrix_vocabulary:x-ec">
 57 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
 58 |   </rdf:Description>
 59 |   <rdf:Description rdf:about="http://bio2rdf.org/affymetrix_vocabulary:qtl">
 60 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
 61 |   </rdf:Description>
 62 |   <rdf:Description rdf:about="http://bio2rdf.org/affymetrix_vocabulary:genechip-array">
 63 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
 64 |   </rdf:Description>
 65 |   <rdf:Description rdf:about="http://bio2rdf.org/affymetrix_vocabulary:species-scientific-name">
 66 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
 67 |   </rdf:Description>
 68 |   <rdf:Description rdf:about="http://bio2rdf.org/affymetrix_vocabulary:annotation-date">
 69 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
 70 |   </rdf:Description>
 71 | 
 72 |     <!-- 
 73 |     ///////////////////////////////////////////////////////////////////////////////////////
 74 |     //
 75 |     // Annotation properties
 76 |     //
 77 |     ///////////////////////////////////////////////////////////////////////////////////////
 78 |      -->
 79 | 
 80 |     
 81 | 
 82 | 
 83 |     <!-- 
 84 |     ///////////////////////////////////////////////////////////////////////////////////////
 85 |     //
 86 |     // Datatypes
 87 |     //
 88 |     ///////////////////////////////////////////////////////////////////////////////////////
 89 |      -->
 90 | 
 91 |     
 92 | 
 93 | 
 94 |     <!-- 
 95 |     ///////////////////////////////////////////////////////////////////////////////////////
 96 |     //
 97 |     // Classes
 98 |     //
 99 |     ///////////////////////////////////////////////////////////////////////////////////////
100 |      -->
101 | 
102 |     
103 | 
104 | 
105 |     <!-- http://bio2rdf.org/affymetrix_vocabulary:Probeset -->
106 | 
107 |     <Class rdf:about="&affymetrix_vocabulary;Probeset">
108 |         <rdfs:comment> </rdfs:comment>
109 |     </Class>
110 |     
111 | 
112 | 
113 |   
114 |     <!-- 
115 |     ///////////////////////////////////////////////////////////////////////////////////////
116 |     //
117 |     // Individuals
118 |     //
119 |     ///////////////////////////////////////////////////////////////////////////////////////
120 |      -->
121 | 
122 |     
123 | 
124 | </rdf:RDF>
125 | 
126 | 
127 | 
128 | <!-- Generated by the OWL API (version 3.2.3.1824) http://owlapi.sourceforge.net -->
129 | 
130 | 


--------------------------------------------------------------------------------
/2/affymetrix/catalog-v001.xml:
--------------------------------------------------------------------------------
1 | <?xml version="1.0" encoding="UTF-8" standalone="no"?>
2 | <catalog prefer="public" xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog">
3 |     <uri id="Imports Wizard Entry" name="http://bio2rdf.org/bio2rdf_affymetrix_vocabulary.owl" uri="bio2rdf_affymetrix_vocabulary.owl"/>
4 |     <group id="Folder Repository, directory=, recursive=true, Auto-Update=true, version=2" prefer="public" xml:base="">
5 |         <uri id="Automatically generated entry, Timestamp=1350330950704" name="http://bio2rdf.org/bio2rdf_affymetrix_sio_mapping.owl" uri="bio2rdf_affymetrix_sio_mapping.owl"/>
6 |         <uri id="Automatically generated entry, Timestamp=1350330950704" name="http://www.w3.org/2002/07/owl" uri="bio2rdf_affymetrix_vocabulary.owl"/>
7 |     </group>
8 | </catalog>
9 | 


--------------------------------------------------------------------------------
/2/biomodels/bio2rdf_biomodels_sio_mapping.owl:
--------------------------------------------------------------------------------
  1 | <?xml version="1.0"?>
  2 | 
  3 | 
  4 | <!DOCTYPE rdf:RDF [
  5 |     <!ENTITY terms "http://purl.org/dc/terms/" >
  6 |     <!ENTITY owl "http://www.w3.org/2002/07/owl#" >
  7 |     <!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
  8 |     <!ENTITY resource "http://semanticscience.org/resource/" >
  9 |     <!ENTITY biopax_vocabulary "http://bio2rdf.org/biopax_vocabulary:" >
 10 |     <!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
 11 |     <!ENTITY dataset_vocabulary2 "http://bio2rdf.org/dataset_vocabulary:" >
 12 |     <!ENTITY dataset_vocabulary "http://bio2rdf.org/biomodels_vocabulary:" >
 13 |     <!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
 14 | ]>
 15 | 
 16 | 
 17 | <rdf:RDF xmlns="http://bio2rdf.org/bio2rdf_biomodels_sio_mapping.owl#"
 18 |      xml:base="http://bio2rdf.org/bio2rdf_biomodels_sio_mapping.owl"
 19 |      xmlns:dataset_vocabulary="http://bio2rdf.org/biomodels_vocabulary:"
 20 |      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
 21 |      xmlns:biopax_vocabulary="http://bio2rdf.org/biopax_vocabulary:"
 22 |      xmlns:dataset_vocabulary2="http://bio2rdf.org/dataset_vocabulary:"
 23 |      xmlns:terms="http://purl.org/dc/terms/"
 24 |      xmlns:resource="http://semanticscience.org/resource/"
 25 |      xmlns:owl="http://www.w3.org/2002/07/owl#"
 26 |      xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
 27 |      xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
 28 |     <owl:Ontology rdf:about="http://bio2rdf.org/bio2rdf_biomodels_sio_mapping.owl">
 29 |         <terms:creator rdf:datatype="&xsd;Name">Jose Cruz-Toledo</terms:creator>
 30 |         <owl:imports rdf:resource="http://bio2rdf.org/bio2rdf_biomodels_vocabulary.owl"/>
 31 |         <owl:imports rdf:resource="http://semanticscience.org/ontology/sio.owl"/>
 32 |     </owl:Ontology>
 33 |     
 34 | 
 35 | 
 36 |     <!-- 
 37 |     ///////////////////////////////////////////////////////////////////////////////////////
 38 |     //
 39 |     // Annotation properties
 40 |     //
 41 |     ///////////////////////////////////////////////////////////////////////////////////////
 42 |      -->
 43 | 
 44 |     
 45 | 
 46 | 
 47 |     <!-- 
 48 |     ///////////////////////////////////////////////////////////////////////////////////////
 49 |     //
 50 |     // Object Properties
 51 |     //
 52 |     ///////////////////////////////////////////////////////////////////////////////////////
 53 |      -->
 54 | 
 55 |     
 56 | 
 57 | 
 58 |     <!-- http://bio2rdf.org/biopax_vocabulary:identical-to -->
 59 | 
 60 |     <rdf:Description rdf:about="&biopax_vocabulary;identical-to">
 61 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 62 |     </rdf:Description>
 63 |     
 64 | 
 65 | 
 66 |     <!-- http://bio2rdf.org/biopax_vocabulary:publication -->
 67 | 
 68 |     <rdf:Description rdf:about="&biopax_vocabulary;publication">
 69 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 70 |     </rdf:Description>
 71 |     
 72 | 
 73 | 
 74 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_count -->
 75 | 
 76 |     <rdf:Description rdf:about="&dataset_vocabulary2;has_count">
 77 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 78 |     </rdf:Description>
 79 |     
 80 | 
 81 | 
 82 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_literal_count -->
 83 | 
 84 |     <rdf:Description rdf:about="&dataset_vocabulary2;has_literal_count">
 85 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 86 |     </rdf:Description>
 87 |     
 88 | 
 89 | 
 90 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_object_count -->
 91 | 
 92 |     <rdf:Description rdf:about="&dataset_vocabulary2;has_object_count">
 93 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 94 |     </rdf:Description>
 95 |     
 96 | 
 97 | 
 98 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_object_type -->
 99 | 
100 |     <rdf:Description rdf:about="&dataset_vocabulary2;has_object_type">
101 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
102 |     </rdf:Description>
103 |     
104 | 
105 | 
106 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_predicate -->
107 | 
108 |     <rdf:Description rdf:about="&dataset_vocabulary2;has_predicate">
109 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
110 |     </rdf:Description>
111 |     
112 | 
113 | 
114 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_predicate_literal_count -->
115 | 
116 |     <rdf:Description rdf:about="&dataset_vocabulary2;has_predicate_literal_count">
117 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
118 |     </rdf:Description>
119 |     
120 | 
121 | 
122 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_predicate_object_count -->
123 | 
124 |     <rdf:Description rdf:about="&dataset_vocabulary2;has_predicate_object_count">
125 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
126 |     </rdf:Description>
127 |     
128 | 
129 | 
130 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_predicate_unique_subject_unique_literal_count -->
131 | 
132 |     <rdf:Description rdf:about="&dataset_vocabulary2;has_predicate_unique_subject_unique_literal_count">
133 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
134 |     </rdf:Description>
135 |     
136 | 
137 | 
138 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_predicate_unique_subject_unique_object_count -->
139 | 
140 |     <rdf:Description rdf:about="&dataset_vocabulary2;has_predicate_unique_subject_unique_object_count">
141 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
142 |     </rdf:Description>
143 |     
144 | 
145 | 
146 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_subject_count -->
147 | 
148 |     <rdf:Description rdf:about="&dataset_vocabulary2;has_subject_count">
149 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
150 |     </rdf:Description>
151 |     
152 | 
153 | 
154 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_subject_type -->
155 | 
156 |     <rdf:Description rdf:about="&dataset_vocabulary2;has_subject_type">
157 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
158 |     </rdf:Description>
159 |     
160 | 
161 | 
162 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_triple_count -->
163 | 
164 |     <rdf:Description rdf:about="&dataset_vocabulary2;has_triple_count">
165 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
166 |     </rdf:Description>
167 |     
168 | 
169 | 
170 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_type -->
171 | 
172 |     <rdf:Description rdf:about="&dataset_vocabulary2;has_type">
173 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
174 |     </rdf:Description>
175 |     
176 | 
177 | 
178 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_type_count -->
179 | 
180 |     <rdf:Description rdf:about="&dataset_vocabulary2;has_type_count">
181 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
182 |     </rdf:Description>
183 |     
184 | 
185 | 
186 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_type_relation_type_count -->
187 | 
188 |     <rdf:Description rdf:about="&dataset_vocabulary2;has_type_relation_type_count">
189 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
190 |     </rdf:Description>
191 |     
192 | 
193 | 
194 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_unique_object_count -->
195 | 
196 |     <rdf:Description rdf:about="&dataset_vocabulary2;has_unique_object_count">
197 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
198 |     </rdf:Description>
199 |     
200 | 
201 | 
202 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_unique_predicate_count -->
203 | 
204 |     <rdf:Description rdf:about="&dataset_vocabulary2;has_unique_predicate_count">
205 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
206 |     </rdf:Description>
207 |     
208 | 
209 | 
210 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_unique_subject_count -->
211 | 
212 |     <rdf:Description rdf:about="&dataset_vocabulary2;has_unique_subject_count">
213 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
214 |     </rdf:Description>
215 |     
216 | 
217 | 
218 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_url -->
219 | 
220 |     <rdf:Description rdf:about="&dataset_vocabulary2;has_url">
221 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
222 |     </rdf:Description>
223 |     
224 | 
225 | 
226 |     <!-- 
227 |     ///////////////////////////////////////////////////////////////////////////////////////
228 |     //
229 |     // Classes
230 |     //
231 |     ///////////////////////////////////////////////////////////////////////////////////////
232 |      -->
233 | 
234 |     
235 | 
236 | 
237 |     <!-- http://bio2rdf.org/dataset_vocabulary:Endpoint -->
238 | 
239 |     <owl:Class rdf:about="&dataset_vocabulary2;Endpoint">
240 |         <rdfs:subClassOf rdf:resource="&resource;SIO_000750"/>
241 |     </owl:Class>
242 | </rdf:RDF>
243 | 
244 | 
245 | 
246 | <!-- Generated by the OWL API (version 3.2.3.1824) http://owlapi.sourceforge.net -->
247 | 
248 | 


--------------------------------------------------------------------------------
/2/biomodels/bio2rdf_biomodels_vocabulary.owl:
--------------------------------------------------------------------------------
 1 | <?xml version="1.0"?>
 2 | 
 3 | 
 4 | <!DOCTYPE rdf:RDF [
 5 |     <!ENTITY terms "http://purl.org/dc/terms/" >
 6 |     <!ENTITY owl "http://www.w3.org/2002/07/owl#" >
 7 |     <!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
 8 |     <!ENTITY resource "http://semanticscience.org/resource/" >
 9 |     <!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
10 |     <!ENTITY dataset_vocabulary "http://bio2rdf.org/dataset_vocabulary:" >
11 |     <!ENTITY biomodels_vocabulary "http://bio2rdf.org/biomodels_vocabulary:" >
12 |     <!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
13 | ]>
14 | 
15 | 
16 | <rdf:RDF xmlns="http://bio2rdf.org/bio2rdf_biomodels_vocabulary.owl#"
17 |      xml:base="http://bio2rdf.org/bio2rdf_biomodels_vocabulary.owl"
18 |       xmlns:dataset_vocabulary="http://bio2rdf.org/dataset_vocabulary:"
19 |      xmlns:biopax_vocabulary="http://bio2rdf.org/biopax_vocabulary:"
20 |      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
21 |      xmlns:terms="http://purl.org/dc/terms/"
22 |      xmlns:resource="http://semanticscience.org/resource/"
23 |      xmlns:owl="http://www.w3.org/2002/07/owl#"
24 |      xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
25 |      xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
26 |     <owl:Ontology rdf:about="http://bio2rdf.org/bio2rdf_biomodels_vocabulary.owl">
27 |         <terms:creator rdf:datatype="&xsd;Name">Jose Cruz-Toledo</terms:creator>
28 |         
29 |     </owl:Ontology>
30 |     
31 | 
32 |     <rdf:Description rdf:about="http://bio2rdf.org/biopax_vocabulary:identical-to">
33 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
34 |   </rdf:Description>
35 |   <rdf:Description rdf:about="http://bio2rdf.org/biopax_vocabulary:publication">
36 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
37 |   </rdf:Description>
38 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_predicate">
39 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
40 |   </rdf:Description>
41 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_predicate_unique_subject_unique_object_count">
42 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
43 |   </rdf:Description>
44 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_subject_type">
45 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
46 |   </rdf:Description>
47 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_triple_count">
48 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
49 |   </rdf:Description>
50 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_predicate_unique_subject_unique_literal_count">
51 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
52 |   </rdf:Description>
53 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_literal_count">
54 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
55 |   </rdf:Description>
56 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_object_count">
57 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
58 |   </rdf:Description>
59 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_url">
60 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
61 |   </rdf:Description>
62 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_unique_subject_count">
63 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
64 |   </rdf:Description>
65 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_unique_predicate_count">
66 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
67 |   </rdf:Description>
68 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_unique_object_count">
69 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
70 |   </rdf:Description>
71 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_type_count">
72 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
73 |   </rdf:Description>
74 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_type">
75 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
76 |   </rdf:Description>
77 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_count">
78 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
79 |   </rdf:Description>
80 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_predicate_literal_count">
81 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
82 |   </rdf:Description>
83 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_predicate_object_count">
84 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
85 |   </rdf:Description>
86 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_subject_count">
87 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
88 |   </rdf:Description>
89 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_type_relation_type_count">
90 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
91 |   </rdf:Description>
92 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_object_type">
93 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
94 |   </rdf:Description>
95 | </rdf:RDF>
96 | 


--------------------------------------------------------------------------------
/2/biomodels/catalog-v001.xml:
--------------------------------------------------------------------------------
 1 | <?xml version="1.0" encoding="UTF-8" standalone="no"?>
 2 | <catalog prefer="public" xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog">
 3 |     <uri id="Imports Wizard Entry" name="http://bio2rdf.org/bio2rdf_biomodels_vocabulary.owl" uri="bio2rdf_biomodels_vocabulary.owl"/>
 4 |     <uri id="Imports Wizard Entry" name="http://bio2rdf.org/bio2rdf_biomodels_sio_mapping.owl" uri="bio2rdf_biomodels_vocabulary.owl"/>
 5 |     <group id="Folder Repository, directory=, recursive=true, Auto-Update=true, version=2" prefer="public" xml:base="">
 6 |         <uri id="Automatically generated entry, Timestamp=1350331209047" name="http://bio2rdf.org/bio2rdf_biomodels_sio_mapping.owl" uri="bio2rdf_biomodels_sio_mapping.owl"/>
 7 |         <uri id="Automatically generated entry, Timestamp=1350331209047" name="http://bio2rdf.org/bio2rdf_biomodels_vocabulary.owl" uri="bio2rdf_biomodels_vocabulary.owl"/>
 8 |     </group>
 9 | </catalog>
10 | 


--------------------------------------------------------------------------------
/2/ctd/bio2rdf_ctd_sio_mapping.owl:
--------------------------------------------------------------------------------
  1 | <?xml version="1.0"?>
  2 | 
  3 | 
  4 | <!DOCTYPE rdf:RDF [
  5 |     <!ENTITY owl "http://www.w3.org/2002/07/owl#" >
  6 |     <!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
  7 |     <!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
  8 |     <!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
  9 | ]>
 10 | 
 11 | 
 12 | <rdf:RDF xmlns="http://www.bio2rdf.org/bio2rdf_ctd_sio_mapping.owl#"
 13 |      xml:base="http://www.bio2rdf.org/bio2rdf_ctd_sio_mapping.owl"
 14 |      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
 15 |      xmlns:owl="http://www.w3.org/2002/07/owl#"
 16 |      xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
 17 |      xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
 18 |     <owl:Ontology rdf:about="http://www.bio2rdf.org/bio2rdf_ctd_sio_mapping.owl">
 19 |         <owl:imports rdf:resource="file:./bio2rdf_ctd_vocabulary.owl"/>
 20 |         <owl:imports rdf:resource="http://semanticscience.org/ontology/sio.owl"/>
 21 |     </owl:Ontology>
 22 |     
 23 | 
 24 | 
 25 |     <!-- 
 26 |     ///////////////////////////////////////////////////////////////////////////////////////
 27 |     //
 28 |     // Object Properties
 29 |     //
 30 |     ///////////////////////////////////////////////////////////////////////////////////////
 31 |      -->
 32 | 
 33 |     
 34 | 
 35 | 
 36 |     <!-- http://bio2rdf.org/ctd_vocabulary:article -->
 37 | 
 38 |     <rdf:Description rdf:about="http://bio2rdf.org/ctd_vocabulary:article">
 39 |         <rdfs:subPropertyOf rdf:resource="http://semanticscience.org/resource/SIO_000008"/>
 40 |     </rdf:Description>
 41 |     
 42 | 
 43 | 
 44 |     <!-- http://bio2rdf.org/ctd_vocabulary:chemical -->
 45 | 
 46 |     <rdf:Description rdf:about="http://bio2rdf.org/ctd_vocabulary:chemical">
 47 |         <rdfs:subPropertyOf rdf:resource="http://semanticscience.org/resource/SIO_000008"/>
 48 |     </rdf:Description>
 49 |     
 50 | 
 51 | 
 52 |     <!-- http://bio2rdf.org/ctd_vocabulary:disease -->
 53 | 
 54 |     <rdf:Description rdf:about="http://bio2rdf.org/ctd_vocabulary:disease">
 55 |         <rdfs:subPropertyOf rdf:resource="http://semanticscience.org/resource/SIO_000008"/>
 56 |     </rdf:Description>
 57 |     
 58 | 
 59 | 
 60 |     <!-- http://bio2rdf.org/ctd_vocabulary:gene -->
 61 | 
 62 |     <rdf:Description rdf:about="http://bio2rdf.org/ctd_vocabulary:gene">
 63 |         <rdfs:subPropertyOf rdf:resource="http://semanticscience.org/resource/SIO_000008"/>
 64 |     </rdf:Description>
 65 |     
 66 | 
 67 | 
 68 |     <!-- http://bio2rdf.org/ctd_vocabulary:has-function -->
 69 | 
 70 |     <rdf:Description rdf:about="http://bio2rdf.org/ctd_vocabulary:has-function">
 71 |         <rdfs:subPropertyOf rdf:resource="http://semanticscience.org/resource/SIO_000225"/>
 72 |     </rdf:Description>
 73 |     
 74 | 
 75 | 
 76 |     <!-- http://bio2rdf.org/ctd_vocabulary:is-located-in -->
 77 | 
 78 |     <rdf:Description rdf:about="http://bio2rdf.org/ctd_vocabulary:is-located-in">
 79 |         <rdfs:subPropertyOf rdf:resource="http://semanticscience.org/resource/SIO_000061"/>
 80 |     </rdf:Description>
 81 |     
 82 | 
 83 | 
 84 |     <!-- http://bio2rdf.org/ctd_vocabulary:is-participant-in -->
 85 | 
 86 |     <rdf:Description rdf:about="http://bio2rdf.org/ctd_vocabulary:is-participant-in">
 87 |         <rdfs:subPropertyOf rdf:resource="http://semanticscience.org/resource/SIO_000062"/>
 88 |     </rdf:Description>
 89 |     
 90 | 
 91 | 
 92 |     <!-- http://bio2rdf.org/ctd_vocabulary:organism -->
 93 | 
 94 |     <rdf:Description rdf:about="http://bio2rdf.org/ctd_vocabulary:organism">
 95 |         <rdfs:subPropertyOf rdf:resource="http://semanticscience.org/resource/SIO_000008"/>
 96 |     </rdf:Description>
 97 |     
 98 | 
 99 | 
100 |     <!-- http://bio2rdf.org/ctd_vocabulary:pathway -->
101 | 
102 |     <rdf:Description rdf:about="http://bio2rdf.org/ctd_vocabulary:pathway">
103 |         <rdfs:subPropertyOf rdf:resource="http://semanticscience.org/resource/SIO_000008"/>
104 |     </rdf:Description>
105 |     
106 | 
107 | 
108 |     <!-- 
109 |     ///////////////////////////////////////////////////////////////////////////////////////
110 |     //
111 |     // Classes
112 |     //
113 |     ///////////////////////////////////////////////////////////////////////////////////////
114 |      -->
115 | 
116 |     
117 | 
118 | 
119 |     <!-- http://bio2rdf.org/ctd_vocabulary:Chemical -->
120 | 
121 |     <rdf:Description rdf:about="http://bio2rdf.org/ctd_vocabulary:Chemical">
122 |         <rdfs:subClassOf rdf:resource="http://semanticscience.org/resource/SIO_011126"/>
123 |     </rdf:Description>
124 |     
125 | 
126 | 
127 |     <!-- http://bio2rdf.org/ctd_vocabulary:Chemical-Disease-Association -->
128 | 
129 |     <rdf:Description rdf:about="http://bio2rdf.org/ctd_vocabulary:Chemical-Disease-Association">
130 |         <rdfs:subClassOf rdf:resource="http://semanticscience.org/resource/SIO_000993"/>
131 |     </rdf:Description>
132 |     
133 | 
134 | 
135 |     <!-- http://bio2rdf.org/ctd_vocabulary:Chemical-Gene-Association -->
136 | 
137 |     <rdf:Description rdf:about="http://bio2rdf.org/ctd_vocabulary:Chemical-Gene-Association">
138 |         <rdfs:subClassOf rdf:resource="http://semanticscience.org/resource/SIO_000897"/>
139 |     </rdf:Description>
140 |     
141 | 
142 | 
143 |     <!-- http://bio2rdf.org/ctd_vocabulary:Disease -->
144 | 
145 |     <rdf:Description rdf:about="http://bio2rdf.org/ctd_vocabulary:Disease">
146 |         <rdfs:subClassOf rdf:resource="http://semanticscience.org/resource/SIO_010299"/>
147 |     </rdf:Description>
148 |     
149 | 
150 | 
151 |     <!-- http://bio2rdf.org/ctd_vocabulary:Gene -->
152 | 
153 |     <rdf:Description rdf:about="http://bio2rdf.org/ctd_vocabulary:Gene">
154 |         <rdfs:subClassOf rdf:resource="http://semanticscience.org/resource/SIO_010035"/>
155 |     </rdf:Description>
156 |     
157 | 
158 | 
159 |     <!-- http://bio2rdf.org/ctd_vocabulary:Gene-Disease-Association -->
160 | 
161 |     <rdf:Description rdf:about="http://bio2rdf.org/ctd_vocabulary:Gene-Disease-Association">
162 |         <rdfs:subClassOf rdf:resource="http://semanticscience.org/resource/SIO_000983"/>
163 |     </rdf:Description>
164 | </rdf:RDF>
165 | 
166 | 
167 | 
168 | <!-- Generated by the OWL API (version 3.3.1957) http://owlapi.sourceforge.net -->
169 | 
170 | 


--------------------------------------------------------------------------------
/2/ctd/bio2rdf_ctd_vocabulary.owl:
--------------------------------------------------------------------------------
 1 | <?xml version="1.0" encoding="utf-8" ?>
 2 | <rdf:RDF
 3 | 	xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
 4 | 	xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" >
 5 |   <rdf:Description rdf:about="http://bio2rdf.org/ctd_vocabulary:Chemical">
 6 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class" />
 7 |   </rdf:Description>
 8 |   <rdf:Description rdf:about="http://bio2rdf.org/ctd_vocabulary:Disease">
 9 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class" />
10 |   </rdf:Description>
11 |   <rdf:Description rdf:about="http://bio2rdf.org/ctd_vocabulary:Chemical-Disease-Association">
12 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class" />
13 |   </rdf:Description>
14 |   <rdf:Description rdf:about="http://bio2rdf.org/ctd_vocabulary:Gene-Disease-Association">
15 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class" />
16 |   </rdf:Description>
17 |   <rdf:Description rdf:about="http://bio2rdf.org/ctd_vocabulary:Chemical-Gene-Association">
18 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class" />
19 |   </rdf:Description>
20 |   <rdf:Description rdf:about="http://bio2rdf.org/ctd_vocabulary:Gene">
21 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class" />
22 |   </rdf:Description>
23 | <rdf:Description rdf:about="http://bio2rdf.org/ctd_vocabulary:action">
24 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#DatatypeProperty" />
25 |   </rdf:Description>
26 |   <rdf:Description rdf:about="http://bio2rdf.org/ctd_vocabulary:gene-symbol">
27 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#DatatypeProperty" />
28 |   </rdf:Description>
29 | <rdf:Description rdf:about="http://bio2rdf.org/ctd_vocabulary:chemical">
30 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
31 |   </rdf:Description>
32 |   <rdf:Description rdf:about="http://bio2rdf.org/ctd_vocabulary:pathway">
33 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
34 |   </rdf:Description>
35 |   <rdf:Description rdf:about="http://bio2rdf.org/ctd_vocabulary:disease">
36 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
37 |   </rdf:Description>
38 |   <rdf:Description rdf:about="http://bio2rdf.org/ctd_vocabulary:article">
39 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
40 |   </rdf:Description>
41 |   <rdf:Description rdf:about="http://bio2rdf.org/ctd_vocabulary:gene">
42 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
43 |   </rdf:Description>
44 |   <rdf:Description rdf:about="http://bio2rdf.org/ctd_vocabulary:is-participant-in">
45 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
46 |   </rdf:Description>
47 |   <rdf:Description rdf:about="http://bio2rdf.org/ctd_vocabulary:is-located-in">
48 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
49 |   </rdf:Description>
50 |   <rdf:Description rdf:about="http://bio2rdf.org/ctd_vocabulary:has-function">
51 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
52 |   </rdf:Description>
53 |   <rdf:Description rdf:about="http://bio2rdf.org/ctd_vocabulary:organism">
54 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
55 |   </rdf:Description>
56 | </rdf:RDF>
57 | 


--------------------------------------------------------------------------------
/2/ctd/catalog-v001.xml:
--------------------------------------------------------------------------------
1 | <?xml version="1.0" encoding="UTF-8" standalone="no"?>
2 | <catalog prefer="public" xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog">
3 |     <group id="Folder Repository, directory=, recursive=true, Auto-Update=true, version=2" prefer="public" xml:base="">
4 |         <uri id="Automatically generated entry, Timestamp=1355329005366" name="http://www.bio2rdf.org/bio2rdf_ctd_sio_mapping.owl" uri="bio2rdf_ctd_sio_mapping.owl"/>
5 |     </group>
6 | </catalog>
7 | 


--------------------------------------------------------------------------------
/2/drugbank/catalog-v001.xml:
--------------------------------------------------------------------------------
1 | <?xml version="1.0" encoding="UTF-8" standalone="no"?>
2 | <catalog prefer="public" xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog">
3 |     <uri id="Imports Wizard Entry" name="http://bio2rdf.org/bio2rdf_drugbank_vocabulary.owl" uri="bio2rdf_drugbank_vocabulary.owl"/>
4 |     <group id="Folder Repository, directory=, recursive=true, Auto-Update=true, version=2" prefer="public" xml:base="">
5 |         <uri id="Automatically generated entry, Timestamp=1350331278577" name="http://bio2rdf.org/bio2rdf_drugbank_sio_mapping.owl" uri="bio2rdf_drugbank_sio_mapping.owl"/>
6 |         <uri id="Automatically generated entry, Timestamp=1350331278577" name="http://www.w3.org/2002/07/owl" uri="bio2rdf_drugbank_vocabulary.owl"/>
7 |     </group>
8 | </catalog>
9 | 


--------------------------------------------------------------------------------
/2/goa/bio2rdf_goa_sio_mapping.owl:
--------------------------------------------------------------------------------
  1 | <?xml version="1.0"?>
  2 | 
  3 | 
  4 | <!DOCTYPE rdf:RDF [
  5 |     <!ENTITY terms "http://purl.org/dc/terms/" >
  6 |     <!ENTITY owl "http://www.w3.org/2002/07/owl#" >
  7 |     <!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
  8 |     <!ENTITY goa_vocabulary "http://bio2rdf.org/goa_vocabulary:" >
  9 |     <!ENTITY resource "http://semanticscience.org/resource/" >
 10 |     <!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
 11 |     <!ENTITY dataset_vocabulary "http://bio2rdf.org/dataset_vocabulary:" >
 12 |     <!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
 13 | ]>
 14 | 
 15 | 
 16 | <rdf:RDF xmlns="http://bio2rdf.org/bio2rdf_goa_sio_mapping.owl#"
 17 |      xml:base="http://bio2rdf.org/bio2rdf_goa_sio_mapping.owl"
 18 |      xmlns:dataset_vocabulary="http://bio2rdf.org/dataset_vocabulary:"
 19 |      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
 20 |      xmlns:terms="http://purl.org/dc/terms/"
 21 |      xmlns:resource="http://semanticscience.org/resource/"
 22 |      xmlns:owl="http://www.w3.org/2002/07/owl#"
 23 |      xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
 24 |      xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
 25 |      xmlns:goa_vocabulary="http://bio2rdf.org/goa_vocabulary:">
 26 |     <owl:Ontology rdf:about="http://bio2rdf.org/bio2rdf_goa_sio_mapping.owl">
 27 |         <terms:creator rdf:datatype="&xsd;Name">Jose Cruz-Toledo</terms:creator>
 28 |         <rdfs:comment xml:lang="en">GO Annotations Bio2RDF SIO Mapping</rdfs:comment>
 29 |         <owl:imports rdf:resource="http://bio2rdf.org/bio2rdf_goa_vocabulary.owl"/>
 30 |         <owl:imports rdf:resource="http://semanticscience.org/ontology/sio.owl"/>
 31 |     </owl:Ontology>
 32 |     
 33 | 
 34 | 
 35 |     <!-- 
 36 |     ///////////////////////////////////////////////////////////////////////////////////////
 37 |     //
 38 |     // Annotation properties
 39 |     //
 40 |     ///////////////////////////////////////////////////////////////////////////////////////
 41 |      -->
 42 | 
 43 |     
 44 | 
 45 | 
 46 |     <!-- 
 47 |     ///////////////////////////////////////////////////////////////////////////////////////
 48 |     //
 49 |     // Object Properties
 50 |     //
 51 |     ///////////////////////////////////////////////////////////////////////////////////////
 52 |      -->
 53 | 
 54 |     
 55 | 
 56 | 
 57 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_literal_count -->
 58 | 
 59 |     <owl:ObjectProperty rdf:about="&dataset_vocabulary;has_literal_count">
 60 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 61 |     </owl:ObjectProperty>
 62 |     
 63 | 
 64 | 
 65 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_predicate_unique_subject_unique_literal_count -->
 66 | 
 67 |     <owl:ObjectProperty rdf:about="&dataset_vocabulary;has_predicate_unique_subject_unique_literal_count">
 68 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 69 |     </owl:ObjectProperty>
 70 |     
 71 | 
 72 | 
 73 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_subject_count -->
 74 | 
 75 |     <owl:ObjectProperty rdf:about="&dataset_vocabulary;has_subject_count">
 76 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 77 |     </owl:ObjectProperty>
 78 |     
 79 | 
 80 | 
 81 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_type_relation_type_count -->
 82 | 
 83 |     <owl:ObjectProperty rdf:about="&dataset_vocabulary;has_type_relation_type_count">
 84 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 85 |     </owl:ObjectProperty>
 86 |     
 87 | 
 88 | 
 89 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_unique_subject_count -->
 90 | 
 91 |     <owl:ObjectProperty rdf:about="&dataset_vocabulary;has_unique_subject_count">
 92 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 93 |     </owl:ObjectProperty>
 94 |     
 95 | 
 96 | 
 97 |     <!-- http://bio2rdf.org/goa_vocabulary:gene_symbol -->
 98 | 
 99 |     <owl:ObjectProperty rdf:about="&goa_vocabulary;gene_symbol">
100 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000671"/>
101 |     </owl:ObjectProperty>
102 |     
103 | 
104 | 
105 |     <!-- http://bio2rdf.org/goa_vocabulary:go_term -->
106 | 
107 |     <owl:ObjectProperty rdf:about="&goa_vocabulary;go_term">
108 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000671"/>
109 |     </owl:ObjectProperty>
110 |     
111 | 
112 | 
113 |     <!-- 
114 |     ///////////////////////////////////////////////////////////////////////////////////////
115 |     //
116 |     // Classes
117 |     //
118 |     ///////////////////////////////////////////////////////////////////////////////////////
119 |      -->
120 | 
121 |     
122 | 
123 | 
124 |     <!-- http://bio2rdf.org/dataset_vocabulary:Endpoint -->
125 | 
126 |     <owl:Class rdf:about="&dataset_vocabulary;Endpoint">
127 |         <rdfs:subClassOf rdf:resource="&resource;SIO_000750"/>
128 |     </owl:Class>
129 |     
130 | 
131 | 
132 |     <!-- http://bio2rdf.org/goa_vocabulary:GeneProduct-GO-Association -->
133 | 
134 |     <rdf:Description rdf:about="&goa_vocabulary;GeneProduct-GO-Association">
135 |         <rdfs:subClassOf rdf:resource="&resource;SIO_000897"/>
136 |     </rdf:Description>
137 | </rdf:RDF>
138 | 
139 | 
140 | 
141 | <!-- Generated by the OWL API (version 3.2.3.1824) http://owlapi.sourceforge.net -->
142 | 
143 | 


--------------------------------------------------------------------------------
/2/goa/bio2rdf_goa_vocabulary.owl:
--------------------------------------------------------------------------------
 1 | <?xml version="1.0"?>
 2 | 
 3 | 
 4 | <!DOCTYPE rdf:RDF [
 5 |     <!ENTITY terms "http://purl.org/dc/terms/" >
 6 |     <!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
 7 |     <!ENTITY goa_vocabulary "http://bio2rdf.org/goa_vocabulary:" >
 8 |     <!ENTITY resource "http://semanticscience.org/resource/" >
 9 |     <!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
10 |     <!ENTITY dataset_vocabulary "http://bio2rdf.org/dataset_vocabulary:" >
11 |     <!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
12 | ]>
13 | 
14 | 
15 | <rdf:RDF xmlns="http://www.w3.org/2002/07/owl#"
16 |      xml:base="http://www.w3.org/2002/07/owl"
17 |      xmlns:dataset_vocabulary="http://bio2rdf.org/dataset_vocabulary:"
18 |      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
19 |      xmlns:terms="http://purl.org/dc/terms/"
20 |      xmlns:resource="http://semanticscience.org/resource/"
21 |      xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
22 |      xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
23 |      xmlns:goa_vocabulary="http://bio2rdf.org/goa_vocabulary:">
24 |     <Ontology rdf:about="http://bio2rdf.org/bio2rdf_goa_vocabulary.owl">
25 |         <terms:creator rdf:datatype="&xsd;Name">Jose Cruz-Toledo</terms:creator>
26 |         <rdfs:comment xml:lang="en">GOAnnotations Bio2RDF SIO mapping</rdfs:comment>
27 |     </Ontology>
28 |     
29 | 
30 | 
31 |     <!-- 
32 |     ///////////////////////////////////////////////////////////////////////////////////////
33 |     //
34 |     // Annotation properties
35 |     //
36 |     ///////////////////////////////////////////////////////////////////////////////////////
37 |      -->
38 | 
39 |     <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_unique_subject_count">
40 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
41 |   </rdf:Description>
42 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_predicate_unique_subject_unique_literal_count">
43 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
44 |   </rdf:Description>
45 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_subject_count">
46 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
47 |   </rdf:Description>
48 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_literal_count">
49 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
50 |   </rdf:Description>
51 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_type_relation_type_count">
52 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
53 |   </rdf:Description>
54 |   <rdf:Description rdf:about="http://bio2rdf.org/goa_vocabulary:gene_symbol">
55 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
56 |   </rdf:Description>
57 |   <rdf:Description rdf:about="http://bio2rdf.org/goa_vocabulary:go_term">
58 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
59 |   </rdf:Description>
60 | 
61 | 
62 |     <!-- 
63 |     ///////////////////////////////////////////////////////////////////////////////////////
64 |     //
65 |     // Classes
66 |     //
67 |     ///////////////////////////////////////////////////////////////////////////////////////
68 |      -->
69 | 
70 |     
71 | 
72 | 
73 |     <!-- http://bio2rdf.org/dataset_vocabulary:Endpoint -->
74 | 
75 |     <Class rdf:about="&dataset_vocabulary;Endpoint"/>
76 |     
77 | 
78 | 
79 |     <!-- http://bio2rdf.org/goa_vocabulary:GeneProduct-GO-Association -->
80 | 
81 |     <Class rdf:about="&goa_vocabulary;GeneProduct-GO-Association"/>
82 | </rdf:RDF>
83 | 
84 | 
85 | 
86 | <!-- Generated by the OWL API (version 3.2.3.1824) http://owlapi.sourceforge.net -->
87 | 
88 | 


--------------------------------------------------------------------------------
/2/goa/catalog-v001.xml:
--------------------------------------------------------------------------------
1 | <?xml version="1.0" encoding="UTF-8" standalone="no"?>
2 | <catalog prefer="public" xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog">
3 |     <uri id="Imports Wizard Entry" name="http://bio2rdf.org/bio2rdf_goa_vocabulary.owl" uri="bio2rdf_goa_vocabulary.owl"/>
4 |     <group id="Folder Repository, directory=, recursive=true, Auto-Update=true, version=2" prefer="public" xml:base="">
5 |         <uri id="Automatically generated entry, Timestamp=1350331895835" name="http://bio2rdf.org/bio2rdf_goa_sio_mapping.owl" uri="bio2rdf_goa_sio_mapping.owl"/>
6 |         <uri id="Automatically generated entry, Timestamp=1350331895835" name="http://www.w3.org/2002/07/owl" uri="bio2rdf_goa_vocabulary.owl"/>
7 |     </group>
8 | </catalog>
9 | 


--------------------------------------------------------------------------------
/2/hgnc/catalog-v001.xml:
--------------------------------------------------------------------------------
1 | <?xml version="1.0" encoding="UTF-8" standalone="no"?>
2 | <catalog prefer="public" xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog">
3 |     <uri id="Imports Wizard Entry" name="http://bio2rdf.org/bio2rdf_hgnc_vocabulary.owl" uri="bio2rdf_hgnc_vocabulary.owl"/>
4 |     <group id="Folder Repository, directory=, recursive=true, Auto-Update=true, version=2" prefer="public" xml:base="">
5 |         <uri id="Automatically generated entry, Timestamp=1350332686841" name="http://bio2rdf.org/bio2rdf_hgnc_sio_mapping.owl" uri="bio2rdf_hgnc_sio_mapping.owl"/>
6 |         <uri id="Automatically generated entry, Timestamp=1350332686841" name="http://www.w3.org/2002/07/owl" uri="bio2rdf_hgnc_vocabulary.owl"/>
7 |     </group>
8 | </catalog>
9 | 


--------------------------------------------------------------------------------
/2/homologene/bio2rdf_homologene_sio_mapping.owl:
--------------------------------------------------------------------------------
  1 | <?xml version="1.0"?>
  2 | 
  3 | 
  4 | <!DOCTYPE rdf:RDF [
  5 |     <!ENTITY terms "http://purl.org/dc/terms/" >
  6 |     <!ENTITY owl "http://www.w3.org/2002/07/owl#" >
  7 |     <!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
  8 |     <!ENTITY resource "http://semanticscience.org/resource/" >
  9 |     <!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
 10 |     <!ENTITY dataset_vocabulary "http://bio2rdf.org/dataset_vocabulary:" >
 11 |     <!ENTITY homologene_vocabulary "http://bio2rdf.org/homologene_vocabulary:" >
 12 |     <!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
 13 | ]>
 14 | 
 15 | 
 16 | <rdf:RDF xmlns="http://bio2rdf.org/bio2rdf_homologene_sio_mapping.owl#"
 17 |      xml:base="http://bio2rdf.org/bio2rdf_homologene_sio_mapping.owl"
 18 |      xmlns:dataset_vocabulary="http://bio2rdf.org/dataset_vocabulary:"
 19 |      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
 20 |      xmlns:terms="http://purl.org/dc/terms/"
 21 |      xmlns:resource="http://semanticscience.org/resource/"
 22 |      xmlns:owl="http://www.w3.org/2002/07/owl#"
 23 |      xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
 24 |      xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
 25 |      xmlns:homologene_vocabulary="http://bio2rdf.org/homologene_vocabulary:">
 26 |     <owl:Ontology rdf:about="http://bio2rdf.org/bio2rdf_homologene_sio_mapping.owl">
 27 |         <terms:creator rdf:datatype="&xsd;Name">Jose Cruz-Toledo</terms:creator>
 28 |         <rdfs:comment xml:lang="en">Homologene Bio2RDF SIO Mapping</rdfs:comment>
 29 |         <owl:imports rdf:resource="http://bio2rdf.org/bio2rdf_ndc_vocabulary.owl"/>
 30 |         <owl:imports rdf:resource="http://semanticscience.org/ontology/sio.owl"/>
 31 |     </owl:Ontology>
 32 |     
 33 | 
 34 | 
 35 |     <!-- 
 36 |     ///////////////////////////////////////////////////////////////////////////////////////
 37 |     //
 38 |     // Annotation properties
 39 |     //
 40 |     ///////////////////////////////////////////////////////////////////////////////////////
 41 |      -->
 42 | 
 43 |     
 44 | 
 45 | 
 46 |     <!-- 
 47 |     ///////////////////////////////////////////////////////////////////////////////////////
 48 |     //
 49 |     // Object Properties
 50 |     //
 51 |     ///////////////////////////////////////////////////////////////////////////////////////
 52 |      -->
 53 | 
 54 |     
 55 | 
 56 | 
 57 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_count -->
 58 | 
 59 |     <rdf:Description rdf:about="&dataset_vocabulary;has_count">
 60 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 61 |     </rdf:Description>
 62 |     
 63 | 
 64 | 
 65 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_literal_count -->
 66 | 
 67 |     <rdf:Description rdf:about="&dataset_vocabulary;has_literal_count">
 68 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 69 |     </rdf:Description>
 70 |     
 71 | 
 72 | 
 73 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_object_count -->
 74 | 
 75 |     <rdf:Description rdf:about="&dataset_vocabulary;has_object_count">
 76 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 77 |     </rdf:Description>
 78 |     
 79 | 
 80 | 
 81 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_object_type -->
 82 | 
 83 |     <rdf:Description rdf:about="&dataset_vocabulary;has_object_type">
 84 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 85 |     </rdf:Description>
 86 |     
 87 | 
 88 | 
 89 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_predicate -->
 90 | 
 91 |     <rdf:Description rdf:about="&dataset_vocabulary;has_predicate">
 92 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 93 |     </rdf:Description>
 94 |     
 95 | 
 96 | 
 97 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_predicate_literal_count -->
 98 | 
 99 |     <rdf:Description rdf:about="&dataset_vocabulary;has_predicate_literal_count">
100 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
101 |     </rdf:Description>
102 |     
103 | 
104 | 
105 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_predicate_object_count -->
106 | 
107 |     <rdf:Description rdf:about="&dataset_vocabulary;has_predicate_object_count">
108 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
109 |     </rdf:Description>
110 |     
111 | 
112 | 
113 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_predicate_unique_subject_unique_literal_count -->
114 | 
115 |     <rdf:Description rdf:about="&dataset_vocabulary;has_predicate_unique_subject_unique_literal_count">
116 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
117 |     </rdf:Description>
118 |     
119 | 
120 | 
121 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_predicate_unique_subject_unique_object_count -->
122 | 
123 |     <rdf:Description rdf:about="&dataset_vocabulary;has_predicate_unique_subject_unique_object_count">
124 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
125 |     </rdf:Description>
126 |     
127 | 
128 | 
129 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_subject_count -->
130 | 
131 |     <rdf:Description rdf:about="&dataset_vocabulary;has_subject_count">
132 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
133 |     </rdf:Description>
134 |     
135 | 
136 | 
137 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_subject_type -->
138 | 
139 |     <rdf:Description rdf:about="&dataset_vocabulary;has_subject_type">
140 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
141 |     </rdf:Description>
142 |     
143 | 
144 | 
145 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_triple_count -->
146 | 
147 |     <rdf:Description rdf:about="&dataset_vocabulary;has_triple_count">
148 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
149 |     </rdf:Description>
150 |     
151 | 
152 | 
153 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_type -->
154 | 
155 |     <rdf:Description rdf:about="&dataset_vocabulary;has_type">
156 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
157 |     </rdf:Description>
158 |     
159 | 
160 | 
161 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_type_count -->
162 | 
163 |     <rdf:Description rdf:about="&dataset_vocabulary;has_type_count">
164 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
165 |     </rdf:Description>
166 |     
167 | 
168 | 
169 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_type_relation_type_count -->
170 | 
171 |     <rdf:Description rdf:about="&dataset_vocabulary;has_type_relation_type_count">
172 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
173 |     </rdf:Description>
174 |     
175 | 
176 | 
177 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_unique_object_count -->
178 | 
179 |     <rdf:Description rdf:about="&dataset_vocabulary;has_unique_object_count">
180 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
181 |     </rdf:Description>
182 |     
183 | 
184 | 
185 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_unique_predicate_count -->
186 | 
187 |     <rdf:Description rdf:about="&dataset_vocabulary;has_unique_predicate_count">
188 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
189 |     </rdf:Description>
190 |     
191 | 
192 | 
193 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_unique_subject_count -->
194 | 
195 |     <rdf:Description rdf:about="&dataset_vocabulary;has_unique_subject_count">
196 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
197 |     </rdf:Description>
198 |     
199 | 
200 | 
201 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_url -->
202 | 
203 |     <rdf:Description rdf:about="&dataset_vocabulary;has_url">
204 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
205 |     </rdf:Description>
206 |     
207 | 
208 | 
209 |     <!-- http://bio2rdf.org/homologene_vocabulary:has_gene -->
210 | 
211 |     <rdf:Description rdf:about="&homologene_vocabulary;has_gene">
212 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
213 |     </rdf:Description>
214 |     
215 | 
216 | 
217 |     <!-- http://bio2rdf.org/homologene_vocabulary:has_gene_symbol -->
218 | 
219 |     <rdf:Description rdf:about="&homologene_vocabulary;has_gene_symbol">
220 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000671"/>
221 |     </rdf:Description>
222 |     
223 | 
224 | 
225 |     <!-- http://bio2rdf.org/homologene_vocabulary:has_gi -->
226 | 
227 |     <rdf:Description rdf:about="&homologene_vocabulary;has_gi">
228 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000671"/>
229 |     </rdf:Description>
230 |     
231 | 
232 | 
233 |     <!-- http://bio2rdf.org/homologene_vocabulary:has_refseq -->
234 | 
235 |     <rdf:Description rdf:about="&homologene_vocabulary;has_refseq">
236 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000671"/>
237 |     </rdf:Description>
238 |     
239 | 
240 | 
241 |     <!-- http://bio2rdf.org/homologene_vocabulary:has_taxid -->
242 | 
243 |     <rdf:Description rdf:about="&homologene_vocabulary;has_taxid">
244 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000671"/>
245 |     </rdf:Description>
246 |     
247 | 
248 | 
249 |     <!-- 
250 |     ///////////////////////////////////////////////////////////////////////////////////////
251 |     //
252 |     // Classes
253 |     //
254 |     ///////////////////////////////////////////////////////////////////////////////////////
255 |      -->
256 | 
257 |     
258 | 
259 | 
260 |     <!-- http://bio2rdf.org/dataset_vocabulary:Endpoint -->
261 | 
262 |     <rdf:Description rdf:about="&dataset_vocabulary;Endpoint">
263 |         <rdfs:subClassOf rdf:resource="&resource;SIO_000750"/>
264 |     </rdf:Description>
265 |     
266 | 
267 | 
268 |     <!-- http://bio2rdf.org/homologene_vocabulary:HomoloGene_Group -->
269 | 
270 |     <rdf:Description rdf:about="&homologene_vocabulary;HomoloGene_Group">
271 |         <rdfs:subClassOf rdf:resource="&resource;SIO_000616"/>
272 |     </rdf:Description>
273 | </rdf:RDF>
274 | 
275 | 
276 | 
277 | <!-- Generated by the OWL API (version 3.2.3.1824) http://owlapi.sourceforge.net -->
278 | 
279 | 


--------------------------------------------------------------------------------
/2/homologene/bio2rdf_homologene_vocabulary.owl:
--------------------------------------------------------------------------------
  1 | <?xml version="1.0"?>
  2 | 
  3 | 
  4 | <!DOCTYPE rdf:RDF [
  5 |     <!ENTITY terms "http://purl.org/dc/terms/" >
  6 |     <!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
  7 |     <!ENTITY resource "http://semanticscience.org/resource/" >
  8 |     <!ENTITY ndc_vocabulary "http://bio2rdf.org/ndc_vocabulary:" >
  9 |     <!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
 10 |     <!ENTITY dataset_vocabulary "http://bio2rdf.org/dataset_vocabulary:" >
 11 |     <!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
 12 | ]>
 13 | 
 14 | 
 15 | <rdf:RDF xmlns="http://www.w3.org/2002/07/owl#"
 16 |      xml:base="http://www.w3.org/2002/07/owl"
 17 |      xmlns:dataset_vocabulary="http://bio2rdf.org/dataset_vocabulary:"
 18 |      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
 19 |      xmlns:terms="http://purl.org/dc/terms/"
 20 |      xmlns:resource="http://semanticscience.org/resource/"
 21 |      xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
 22 |      xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
 23 |      xmlns:ndc_vocabulary="http://bio2rdf.org/ndc_vocabulary:">
 24 |     <Ontology rdf:about="http://bio2rdf.org/bio2rdf_ndc_vocabulary.owl">
 25 |         <terms:creator rdf:datatype="&xsd;Name">Jose Cruz-Toledo</terms:creator>
 26 |     </Ontology>
 27 | 
 28 |       <rdf:Description rdf:about="http://bio2rdf.org/homologene_vocabulary:HomoloGene_Group">
 29 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class" />
 30 |   </rdf:Description>
 31 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:Endpoint">
 32 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class" />
 33 |   </rdf:Description>
 34 |    <rdf:Description rdf:about="http://bio2rdf.org/homologene_vocabulary:has_taxid">
 35 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
 36 |   </rdf:Description>
 37 |   <rdf:Description rdf:about="http://bio2rdf.org/homologene_vocabulary:has_gene_symbol">
 38 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
 39 |   </rdf:Description>
 40 |   <rdf:Description rdf:about="http://bio2rdf.org/homologene_vocabulary:has_gene">
 41 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
 42 |   </rdf:Description>
 43 |   <rdf:Description rdf:about="http://bio2rdf.org/homologene_vocabulary:has_gi">
 44 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
 45 |   </rdf:Description>
 46 |   <rdf:Description rdf:about="http://bio2rdf.org/homologene_vocabulary:has_refseq">
 47 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
 48 |   </rdf:Description>
 49 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_url">
 50 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
 51 |   </rdf:Description>
 52 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_unique_predicate_count">
 53 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
 54 |   </rdf:Description>
 55 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_type_count">
 56 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
 57 |   </rdf:Description>
 58 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_type">
 59 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
 60 |   </rdf:Description>
 61 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_predicate_literal_count">
 62 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
 63 |   </rdf:Description>
 64 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_predicate_unique_subject_unique_literal_count">
 65 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
 66 |   </rdf:Description>
 67 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_literal_count">
 68 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
 69 |   </rdf:Description>
 70 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_type_relation_type_count">
 71 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
 72 |   </rdf:Description>
 73 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_subject_type">
 74 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
 75 |   </rdf:Description>
 76 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_object_type">
 77 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
 78 |   </rdf:Description>
 79 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_triple_count">
 80 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
 81 |   </rdf:Description>
 82 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_unique_object_count">
 83 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
 84 |   </rdf:Description>
 85 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_unique_subject_count">
 86 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
 87 |   </rdf:Description>
 88 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_count">
 89 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
 90 |   </rdf:Description>
 91 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_predicate">
 92 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
 93 |   </rdf:Description>
 94 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_predicate_object_count">
 95 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
 96 |   </rdf:Description>
 97 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_subject_count">
 98 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
 99 |   </rdf:Description>
100 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_predicate_unique_subject_unique_object_count">
101 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
102 |   </rdf:Description>
103 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_object_count">
104 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
105 |   </rdf:Description>
106 | 
107 | 
108 | </rdf:RDF>


--------------------------------------------------------------------------------
/2/homologene/catalog-v001.xml:
--------------------------------------------------------------------------------
1 | <?xml version="1.0" encoding="UTF-8" standalone="no"?>
2 | <catalog prefer="public" xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog">
3 |     <uri id="Imports Wizard Entry" name="http://bio2rdf.org/bio2rdf_ndc_vocabulary.owl" uri="bio2rdf_homologene_vocabulary.owl"/>
4 |     <group id="Folder Repository, directory=, recursive=true, Auto-Update=true, version=2" prefer="public" xml:base="">
5 |         <uri id="Automatically generated entry, Timestamp=1350341396946" name="http://bio2rdf.org/bio2rdf_homologene_sio_mapping.owl" uri="bio2rdf_homologene_sio_mapping.owl"/>
6 |         <uri id="Automatically generated entry, Timestamp=1350341396946" name="http://www.w3.org/2002/07/owl" uri="bio2rdf_homologene_vocabulary.owl"/>
7 |     </group>
8 | </catalog>
9 | 


--------------------------------------------------------------------------------
/2/interpro/catalog-v001.xml:
--------------------------------------------------------------------------------
1 | <?xml version="1.0" encoding="UTF-8" standalone="no"?>
2 | <catalog prefer="public" xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog">
3 |     <uri id="Imports Wizard Entry" name="http://bio2rdf.org/bio2rdf_interpro_vocabulary.owl" uri="bio2rdf_interpro_vocabulary.owl"/>
4 |     <group id="Folder Repository, directory=, recursive=true, Auto-Update=true, version=2" prefer="public" xml:base="">
5 |         <uri id="Automatically generated entry, Timestamp=1350344633002" name="http://bio2rdf.org/bio2rdf_interpro_sio_mapping.owl" uri="bio2rdf_interpro_sio_mapping.owl"/>
6 |         <uri id="Automatically generated entry, Timestamp=1350344633002" name="http://www.w3.org/2002/07/owl" uri="bio2rdf_interpro_vocabulary.owl"/>
7 |     </group>
8 | </catalog>
9 | 


--------------------------------------------------------------------------------
/2/irefindex/bio2rdf_irefindex_sio_mapping.owl:
--------------------------------------------------------------------------------
  1 | <?xml version="1.0"?>
  2 | 
  3 | 
  4 | <!DOCTYPE rdf:RDF [
  5 |     <!ENTITY terms "http://purl.org/dc/terms/" >
  6 |     <!ENTITY owl "http://www.w3.org/2002/07/owl#" >
  7 |     <!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
  8 |     <!ENTITY resource "http://semanticscience.org/resource/" >
  9 |     <!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
 10 |     <!ENTITY dataset_vocabulary "http://bio2rdf.org/dataset_vocabulary:" >
 11 |     <!ENTITY irefindex_vocabulary "http://bio2rdf.org/irefindex_vocabulary:" >
 12 |     <!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
 13 | ]>
 14 | 
 15 | 
 16 | <rdf:RDF xmlns="http://bio2rdf.org/bio2rdf_irefindex_sio_mapping.owl#"
 17 |      xml:base="http://bio2rdf.org/bio2rdf_irefindex_sio_mapping.owl"
 18 |      xmlns:dataset_vocabulary="http://bio2rdf.org/dataset_vocabulary:"
 19 |      xmlns:irefindex_vocabulary="http://bio2rdf.org/irefindex_vocabulary:"
 20 |      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
 21 |      xmlns:terms="http://purl.org/dc/terms/"
 22 |      xmlns:resource="http://semanticscience.org/resource/"
 23 |      xmlns:owl="http://www.w3.org/2002/07/owl#"
 24 |      xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
 25 |      xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
 26 |     <owl:Ontology rdf:about="http://bio2rdf.org/bio2rdf_irefindex_sio_mapping.owl">
 27 |         <terms:creator rdf:datatype="&xsd;Name">Jose Cruz-Toledo</terms:creator>
 28 |         <rdfs:comment xml:lang="en">iRefindex Bio2RDF SIO mapping</rdfs:comment>
 29 |         <owl:imports rdf:resource="http://bio2rdf.org/bio2rdf_mesh_vocabulary.owl"/>
 30 |         <owl:imports rdf:resource="http://semanticscience.org/ontology/sio.owl"/>
 31 |     </owl:Ontology>
 32 |     
 33 | 
 34 | 
 35 |     <!-- 
 36 |     ///////////////////////////////////////////////////////////////////////////////////////
 37 |     //
 38 |     // Annotation properties
 39 |     //
 40 |     ///////////////////////////////////////////////////////////////////////////////////////
 41 |      -->
 42 | 
 43 |     
 44 | 
 45 | 
 46 |     <!-- 
 47 |     ///////////////////////////////////////////////////////////////////////////////////////
 48 |     //
 49 |     // Object Properties
 50 |     //
 51 |     ///////////////////////////////////////////////////////////////////////////////////////
 52 |      -->
 53 | 
 54 |     
 55 | 
 56 | 
 57 |     <!-- http://bio2rdf.org/irefindex_vocabulary:expansion-method -->
 58 | 
 59 |     <rdf:Description rdf:about="&irefindex_vocabulary;expansion-method">
 60 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 61 |     </rdf:Description>
 62 |     
 63 | 
 64 | 
 65 |     <!-- http://bio2rdf.org/irefindex_vocabulary:interactor_b_biological_role -->
 66 | 
 67 |     <rdf:Description rdf:about="&irefindex_vocabulary;interactor_b_biological_role">
 68 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 69 |     </rdf:Description>
 70 |     
 71 | 
 72 | 
 73 |     <!-- http://bio2rdf.org/irefindex_vocabulary:method -->
 74 | 
 75 |     <rdf:Description rdf:about="&irefindex_vocabulary;method">
 76 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 77 |     </rdf:Description>
 78 |     
 79 | 
 80 | 
 81 |     <!-- http://bio2rdf.org/irefindex_vocabulary:minimum-number-interactions-reported -->
 82 | 
 83 |     <rdf:Description rdf:about="&irefindex_vocabulary;minimum-number-interactions-reported">
 84 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 85 |     </rdf:Description>
 86 |     
 87 | 
 88 | 
 89 |     <!-- http://bio2rdf.org/irefindex_vocabulary:taxon-sequence-similar-group -->
 90 | 
 91 |     <rdf:Description rdf:about="&irefindex_vocabulary;taxon-sequence-similar-group">
 92 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 93 |     </rdf:Description>
 94 |     
 95 | 
 96 | 
 97 |     <!-- http://bio2rdf.org/irefindex_vocabulary:taxon-sequence-similar-interaction-group -->
 98 | 
 99 |     <rdf:Description rdf:about="&irefindex_vocabulary;taxon-sequence-similar-interaction-group">
100 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
101 |     </rdf:Description>
102 |     
103 | 
104 | 
105 |     <!-- 
106 |     ///////////////////////////////////////////////////////////////////////////////////////
107 |     //
108 |     // Classes
109 |     //
110 |     ///////////////////////////////////////////////////////////////////////////////////////
111 |      -->
112 | 
113 |     
114 | 
115 | 
116 |     <!-- http://bio2rdf.org/dataset_vocabulary:Endpoint -->
117 | 
118 |     <rdf:Description rdf:about="&dataset_vocabulary;Endpoint">
119 |         <rdfs:subClassOf rdf:resource="&resource;SIO_000750"/>
120 |     </rdf:Description>
121 |     
122 | 
123 | 
124 |     <!-- http://bio2rdf.org/irefindex_vocabulary:Homopolymeric-Complex -->
125 | 
126 |     <rdf:Description rdf:about="&irefindex_vocabulary;Homopolymeric-Complex">
127 |         <rdfs:subClassOf rdf:resource="&resource;SIO_010497"/>
128 |     </rdf:Description>
129 |     
130 | 
131 | 
132 |     <!-- http://bio2rdf.org/irefindex_vocabulary:Multimeric-Complex -->
133 | 
134 |     <rdf:Description rdf:about="&irefindex_vocabulary;Multimeric-Complex">
135 |         <rdfs:subClassOf rdf:resource="&resource;SIO_010497"/>
136 |     </rdf:Description>
137 |     
138 | 
139 | 
140 |     <!-- http://bio2rdf.org/irefindex_vocabulary:Pairwise-Interaction -->
141 | 
142 |     <rdf:Description rdf:about="&irefindex_vocabulary;Pairwise-Interaction">
143 |         <rdfs:subClassOf rdf:resource="&resource;SIO_010013"/>
144 |     </rdf:Description>
145 |     
146 | 
147 | 
148 |     <!-- http://bio2rdf.org/irefindex_vocabulary:Taxon-Sequence-Identical-Group -->
149 | 
150 |     <rdf:Description rdf:about="&irefindex_vocabulary;Taxon-Sequence-Identical-Group">
151 |         <rdfs:subClassOf rdf:resource="&resource;SIO_000436"/>
152 |     </rdf:Description>
153 |     
154 | 
155 | 
156 |     <!-- http://bio2rdf.org/irefindex_vocabulary:Taxon-Sequence-Similar-Group -->
157 | 
158 |     <rdf:Description rdf:about="&irefindex_vocabulary;Taxon-Sequence-Similar-Group">
159 |         <rdfs:subClassOf rdf:resource="&resource;SIO_000436"/>
160 |     </rdf:Description>
161 | </rdf:RDF>
162 | 
163 | 
164 | 
165 | <!-- Generated by the OWL API (version 3.2.3.1824) http://owlapi.sourceforge.net -->
166 | 
167 | 


--------------------------------------------------------------------------------
/2/irefindex/catalog-v001.xml:
--------------------------------------------------------------------------------
1 | <?xml version="1.0" encoding="UTF-8" standalone="no"?>
2 | <catalog prefer="public" xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog">
3 |     <uri id="Imports Wizard Entry" name="http://bio2rdf.org/bio2rdf_mesh_vocabulary.owl" uri="bio2rdf_irefindex_vocabulary.owl"/>
4 |     <group id="Folder Repository, directory=, recursive=true, Auto-Update=true, version=2" prefer="public" xml:base="">
5 |         <uri id="Automatically generated entry, Timestamp=1350313584347" name="http://bio2rdf.org/bio2rdf_irefindex_sio_mapping.owl" uri="bio2rdf_irefindex_sio_mapping.owl"/>
6 |         <uri id="Automatically generated entry, Timestamp=1350313584347" name="http://www.w3.org/2002/07/owl" uri="bio2rdf_irefindex_vocabulary.owl"/>
7 |     </group>
8 | </catalog>
9 | 


--------------------------------------------------------------------------------
/2/mesh/catalog-v001.xml:
--------------------------------------------------------------------------------
1 | <?xml version="1.0" encoding="UTF-8" standalone="no"?>
2 | <catalog prefer="public" xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog">
3 |     <uri id="Imports Wizard Entry" name="http://bio2rdf.org/bio2rdf_mesh_vocabulary.owl" uri="bio2rdf_mesh_vocabulary.owl"/>
4 |     <group id="Folder Repository, directory=, recursive=true, Auto-Update=true, version=2" prefer="public" xml:base="">
5 |         <uri id="Automatically generated entry, Timestamp=1350333009804" name="http://bio2rdf.org/bio2rdf_mesh_sio_mapping.owl" uri="bio2rdf_mesh_sio_mapping.owl"/>
6 |         <uri id="Automatically generated entry, Timestamp=1350333009804" name="http://www.w3.org/2002/07/owl" uri="bio2rdf_mesh_vocabulary.owl"/>
7 |     </group>
8 | </catalog>
9 | 


--------------------------------------------------------------------------------
/2/ncbo/catalog-v001.xml:
--------------------------------------------------------------------------------
1 | <?xml version="1.0" encoding="UTF-8" standalone="no"?>
2 | <catalog prefer="public" xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog">
3 |     <group id="Folder Repository, directory=, recursive=true, Auto-Update=true, version=2" prefer="public" xml:base="">
4 |         <uri id="Automatically generated entry, Timestamp=1350314170097" name="http://www.w3.org/2002/07/owl" uri="bio2rdf_ncbo_vocabulary.owl"/>
5 |     </group>
6 | </catalog>
7 | 


--------------------------------------------------------------------------------
/2/ndc/bio2rdf_ndc_sio_mapping.owl:
--------------------------------------------------------------------------------
  1 | <?xml version="1.0"?>
  2 | 
  3 | 
  4 | <!DOCTYPE rdf:RDF [
  5 |     <!ENTITY owl "http://www.w3.org/2002/07/owl#" >
  6 |     <!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
  7 |     <!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
  8 |     <!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
  9 | ]>
 10 | 
 11 | 
 12 | <rdf:RDF xmlns="http://www.bio2rdf.org/bio2rdf_ndc_sio_mapping.owl#"
 13 |      xml:base="http://www.bio2rdf.org/bio2rdf_ndc_sio_mapping.owl"
 14 |      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
 15 |      xmlns:owl="http://www.w3.org/2002/07/owl#"
 16 |      xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
 17 |      xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
 18 |     <owl:Ontology rdf:about="http://www.bio2rdf.org/bio2rdf_ndc_sio_mapping.owl">
 19 |         <owl:imports rdf:resource="file:./bio2rdf_ndc_vocabulary.owl"/>
 20 |         <owl:imports rdf:resource="http://semanticscience.org/ontology/sio.owl"/>
 21 |     </owl:Ontology>
 22 |     
 23 | 
 24 | 
 25 |     <!-- 
 26 |     ///////////////////////////////////////////////////////////////////////////////////////
 27 |     //
 28 |     // Object Properties
 29 |     //
 30 |     ///////////////////////////////////////////////////////////////////////////////////////
 31 |      -->
 32 | 
 33 |     
 34 | 
 35 | 
 36 |     <!-- http://bio2rdf.org/ndc_vocabulary:amount_unit -->
 37 | 
 38 |     <owl:ObjectProperty rdf:about="http://bio2rdf.org/ndc_vocabulary:amount_unit">
 39 |         <rdfs:subPropertyOf rdf:resource="http://semanticscience.org/resource/SIO_000008"/>
 40 |     </owl:ObjectProperty>
 41 |     
 42 | 
 43 | 
 44 |     <!-- http://bio2rdf.org/ndc_vocabulary:dosage-form -->
 45 | 
 46 |     <owl:ObjectProperty rdf:about="http://bio2rdf.org/ndc_vocabulary:dosage-form">
 47 |         <rdfs:subPropertyOf rdf:resource="http://semanticscience.org/resource/SIO_000008"/>
 48 |     </owl:ObjectProperty>
 49 |     
 50 | 
 51 | 
 52 |     <!-- http://bio2rdf.org/ndc_vocabulary:has-part -->
 53 | 
 54 |     <owl:ObjectProperty rdf:about="http://bio2rdf.org/ndc_vocabulary:has-part">
 55 |         <rdfs:subPropertyOf rdf:resource="http://semanticscience.org/resource/SIO_000028"/>
 56 |     </owl:ObjectProperty>
 57 |     
 58 | 
 59 | 
 60 |     <!-- http://bio2rdf.org/ndc_vocabulary:ingredient -->
 61 | 
 62 |     <owl:ObjectProperty rdf:about="http://bio2rdf.org/ndc_vocabulary:ingredient">
 63 |         <rdfs:subPropertyOf rdf:resource="http://semanticscience.org/resource/SIO_000008"/>
 64 |     </owl:ObjectProperty>
 65 |     
 66 | 
 67 | 
 68 |     <!-- http://bio2rdf.org/ndc_vocabulary:labeller -->
 69 | 
 70 |     <owl:ObjectProperty rdf:about="http://bio2rdf.org/ndc_vocabulary:labeller">
 71 |         <rdfs:subPropertyOf rdf:resource="http://semanticscience.org/resource/SIO_000008"/>
 72 |     </owl:ObjectProperty>
 73 |     
 74 | 
 75 | 
 76 |     <!-- http://bio2rdf.org/ndc_vocabulary:package -->
 77 | 
 78 |     <owl:ObjectProperty rdf:about="http://bio2rdf.org/ndc_vocabulary:package">
 79 |         <rdfs:subPropertyOf rdf:resource="http://semanticscience.org/resource/SIO_000008"/>
 80 |     </owl:ObjectProperty>
 81 |     
 82 | 
 83 | 
 84 |     <!-- http://bio2rdf.org/ndc_vocabulary:pharmagocological-class -->
 85 | 
 86 |     <owl:ObjectProperty rdf:about="http://bio2rdf.org/ndc_vocabulary:pharmagocological-class">
 87 |         <rdfs:subPropertyOf rdf:resource="http://semanticscience.org/resource/SIO_000008"/>
 88 |     </owl:ObjectProperty>
 89 |     
 90 | 
 91 | 
 92 |     <!-- http://bio2rdf.org/ndc_vocabulary:route -->
 93 | 
 94 |     <owl:ObjectProperty rdf:about="http://bio2rdf.org/ndc_vocabulary:route">
 95 |         <rdfs:subPropertyOf rdf:resource="http://semanticscience.org/resource/SIO_000008"/>
 96 |     </owl:ObjectProperty>
 97 |     
 98 | 
 99 | 
100 |     <!-- 
101 |     ///////////////////////////////////////////////////////////////////////////////////////
102 |     //
103 |     // Data properties
104 |     //
105 |     ///////////////////////////////////////////////////////////////////////////////////////
106 |      -->
107 | 
108 |     
109 | 
110 | 
111 |     <!-- http://bio2rdf.org/ndc_vocabulary:amount -->
112 | 
113 |     <owl:DatatypeProperty rdf:about="http://bio2rdf.org/ndc_vocabulary:amount"/>
114 |     
115 | 
116 | 
117 |     <!-- http://bio2rdf.org/ndc_vocabulary:application-number -->
118 | 
119 |     <owl:DatatypeProperty rdf:about="http://bio2rdf.org/ndc_vocabulary:application-number"/>
120 |     
121 | 
122 | 
123 |     <!-- http://bio2rdf.org/ndc_vocabulary:end-marketing-date -->
124 | 
125 |     <owl:DatatypeProperty rdf:about="http://bio2rdf.org/ndc_vocabulary:end-marketing-date"/>
126 |     
127 | 
128 | 
129 |     <!-- http://bio2rdf.org/ndc_vocabulary:marketing-category -->
130 | 
131 |     <owl:DatatypeProperty rdf:about="http://bio2rdf.org/ndc_vocabulary:marketing-category"/>
132 |     
133 | 
134 | 
135 |     <!-- http://bio2rdf.org/ndc_vocabulary:non-proprietary-name -->
136 | 
137 |     <owl:DatatypeProperty rdf:about="http://bio2rdf.org/ndc_vocabulary:non-proprietary-name"/>
138 |     
139 | 
140 | 
141 |     <!-- http://bio2rdf.org/ndc_vocabulary:start-marketing-date -->
142 | 
143 |     <owl:DatatypeProperty rdf:about="http://bio2rdf.org/ndc_vocabulary:start-marketing-date"/>
144 |     
145 | 
146 | 
147 |     <!-- http://bio2rdf.org/ndc_vocabulary:trade-name -->
148 | 
149 |     <owl:DatatypeProperty rdf:about="http://bio2rdf.org/ndc_vocabulary:trade-name"/>
150 |     
151 | 
152 | 
153 |     <!-- http://bio2rdf.org/ndc_vocabulary:trade-name-suffix -->
154 | 
155 |     <owl:DatatypeProperty rdf:about="http://bio2rdf.org/ndc_vocabulary:trade-name-suffix"/>
156 |     
157 | 
158 | 
159 |     <!-- 
160 |     ///////////////////////////////////////////////////////////////////////////////////////
161 |     //
162 |     // Classes
163 |     //
164 |     ///////////////////////////////////////////////////////////////////////////////////////
165 |      -->
166 | 
167 |     
168 | 
169 | 
170 |     <!-- http://bio2rdf.org/ndc_vocabulary:Ingredient -->
171 | 
172 |     <owl:Class rdf:about="http://bio2rdf.org/ndc_vocabulary:Ingredient">
173 |         <rdfs:subClassOf rdf:resource="http://semanticscience.org/resource/SIO_010338"/>
174 |     </owl:Class>
175 |     
176 | 
177 | 
178 |     <!-- http://bio2rdf.org/ndc_vocabulary:Labeller -->
179 | 
180 |     <owl:Class rdf:about="http://bio2rdf.org/ndc_vocabulary:Labeller"/>
181 |     
182 | 
183 | 
184 |     <!-- http://bio2rdf.org/ndc_vocabulary:Product -->
185 | 
186 |     <owl:Class rdf:about="http://bio2rdf.org/ndc_vocabulary:Product">
187 |         <rdfs:subClassOf rdf:resource="http://semanticscience.org/resource/SIO_011126"/>
188 |     </owl:Class>
189 |     
190 | 
191 | 
192 |     <!-- http://bio2rdf.org/ndc_vocabulary:Substance -->
193 | 
194 |     <owl:Class rdf:about="http://bio2rdf.org/ndc_vocabulary:Substance">
195 |         <rdfs:subClassOf rdf:resource="http://semanticscience.org/resource/SIO_011126"/>
196 |     </owl:Class>
197 |     
198 | 
199 | 
200 |     <!-- http://bio2rdf.org/ndc_vocabulary:cellular-therapy -->
201 | 
202 |     <owl:Class rdf:about="http://bio2rdf.org/ndc_vocabulary:cellular-therapy">
203 |         <rdfs:subClassOf rdf:resource="http://semanticscience.org/resource/SIO_010046"/>
204 |     </owl:Class>
205 |     
206 | 
207 | 
208 |     <!-- http://bio2rdf.org/ndc_vocabulary:human-otc-drug -->
209 | 
210 |     <owl:Class rdf:about="http://bio2rdf.org/ndc_vocabulary:human-otc-drug">
211 |         <rdfs:subClassOf rdf:resource="http://semanticscience.org/resource/SIO_010038"/>
212 |     </owl:Class>
213 |     
214 | 
215 | 
216 |     <!-- http://bio2rdf.org/ndc_vocabulary:human-prescription-drug -->
217 | 
218 |     <owl:Class rdf:about="http://bio2rdf.org/ndc_vocabulary:human-prescription-drug">
219 |         <rdfs:subClassOf rdf:resource="http://semanticscience.org/resource/SIO_010038"/>
220 |     </owl:Class>
221 |     
222 | 
223 | 
224 |     <!-- http://bio2rdf.org/ndc_vocabulary:non-standardized-allergenic -->
225 | 
226 |     <owl:Class rdf:about="http://bio2rdf.org/ndc_vocabulary:non-standardized-allergenic">
227 |         <rdfs:subClassOf rdf:resource="http://semanticscience.org/resource/SIO_011126"/>
228 |     </owl:Class>
229 |     
230 | 
231 | 
232 |     <!-- http://bio2rdf.org/ndc_vocabulary:plasma-derivative -->
233 | 
234 |     <owl:Class rdf:about="http://bio2rdf.org/ndc_vocabulary:plasma-derivative">
235 |         <rdfs:subClassOf rdf:resource="http://semanticscience.org/resource/SIO_011126"/>
236 |     </owl:Class>
237 |     
238 | 
239 | 
240 |     <!-- http://bio2rdf.org/ndc_vocabulary:standardized-allergenic -->
241 | 
242 |     <owl:Class rdf:about="http://bio2rdf.org/ndc_vocabulary:standardized-allergenic">
243 |         <rdfs:subClassOf rdf:resource="http://semanticscience.org/resource/SIO_011126"/>
244 |     </owl:Class>
245 |     
246 | 
247 | 
248 |     <!-- http://bio2rdf.org/ndc_vocabulary:vaccine -->
249 | 
250 |     <owl:Class rdf:about="http://bio2rdf.org/ndc_vocabulary:vaccine">
251 |         <rdfs:subClassOf rdf:resource="http://semanticscience.org/resource/SIO_010462"/>
252 |     </owl:Class>
253 | </rdf:RDF>
254 | 
255 | 
256 | 
257 | <!-- Generated by the OWL API (version 3.3.1957) http://owlapi.sourceforge.net -->
258 | 
259 | 


--------------------------------------------------------------------------------
/2/ndc/bio2rdf_ndc_vocabulary.owl:
--------------------------------------------------------------------------------
 1 | <?xml version="1.0" encoding="utf-8" ?>
 2 | <rdf:RDF
 3 | 	xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
 4 | 	xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
 5 |   <rdf:Description rdf:about="http://bio2rdf.org/ndc_vocabulary:Product">
 6 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class" />
 7 |   </rdf:Description>
 8 |   <rdf:Description rdf:about="http://bio2rdf.org/ndc_vocabulary:Substance">
 9 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class" />
10 |   </rdf:Description>
11 |   <rdf:Description rdf:about="http://bio2rdf.org/ndc_vocabulary:vaccine">
12 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class" />
13 |   </rdf:Description>
14 |   <rdf:Description rdf:about="http://bio2rdf.org/ndc_vocabulary:plasma-derivative">
15 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class" />
16 |   </rdf:Description>
17 |   <rdf:Description rdf:about="http://bio2rdf.org/ndc_vocabulary:Ingredient">
18 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class" />
19 |   </rdf:Description>
20 |   <rdf:Description rdf:about="http://bio2rdf.org/ndc_vocabulary:non-standardized-allergenic">
21 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class" />
22 |   </rdf:Description>
23 |   <rdf:Description rdf:about="http://bio2rdf.org/ndc_vocabulary:human-prescription-drug">
24 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class" />
25 |   </rdf:Description>
26 |   <rdf:Description rdf:about="http://bio2rdf.org/ndc_vocabulary:Labeller">
27 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class" />
28 |   </rdf:Description>
29 |   <rdf:Description rdf:about="http://bio2rdf.org/ndc_vocabulary:human-otc-drug">
30 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class" />
31 |   </rdf:Description>
32 |   <rdf:Description rdf:about="http://bio2rdf.org/ndc_vocabulary:cellular-therapy">
33 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class" />
34 |   </rdf:Description>
35 |   <rdf:Description rdf:about="http://bio2rdf.org/ndc_vocabulary:standardized-allergenic">
36 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class" />
37 |   </rdf:Description>
38 | <rdf:Description rdf:about="http://bio2rdf.org/ndc_vocabulary:trade-name">
39 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#DatatypeProperty" />
40 |   </rdf:Description>
41 |   <rdf:Description rdf:about="http://bio2rdf.org/ndc_vocabulary:non-proprietary-name">
42 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#DatatypeProperty" />
43 |   </rdf:Description>
44 |   <rdf:Description rdf:about="http://bio2rdf.org/ndc_vocabulary:start-marketing-date">
45 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#DatatypeProperty" />
46 |   </rdf:Description>
47 |   <rdf:Description rdf:about="http://bio2rdf.org/ndc_vocabulary:marketing-category">
48 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#DatatypeProperty" />
49 |   </rdf:Description>
50 |   <rdf:Description rdf:about="http://bio2rdf.org/ndc_vocabulary:application-number">
51 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#DatatypeProperty" />
52 |   </rdf:Description>
53 |   <rdf:Description rdf:about="http://bio2rdf.org/ndc_vocabulary:trade-name-suffix">
54 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#DatatypeProperty" />
55 |   </rdf:Description>
56 |   <rdf:Description rdf:about="http://bio2rdf.org/ndc_vocabulary:end-marketing-date">
57 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#DatatypeProperty" />
58 |   </rdf:Description>
59 |   <rdf:Description rdf:about="http://bio2rdf.org/ndc_vocabulary:amount">
60 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#DatatypeProperty" />
61 |   </rdf:Description>
62 | <rdf:Description rdf:about="http://bio2rdf.org/ndc_vocabulary:dosage-form">
63 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
64 |   </rdf:Description>
65 |   <rdf:Description rdf:about="http://bio2rdf.org/ndc_vocabulary:route">
66 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
67 |   </rdf:Description>
68 |   <rdf:Description rdf:about="http://bio2rdf.org/ndc_vocabulary:labeller">
69 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
70 |   </rdf:Description>
71 |   <rdf:Description rdf:about="http://bio2rdf.org/ndc_vocabulary:ingredient">
72 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
73 |   </rdf:Description>
74 |   <rdf:Description rdf:about="http://bio2rdf.org/ndc_vocabulary:amount_unit">
75 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
76 |   </rdf:Description>
77 |   <rdf:Description rdf:about="http://bio2rdf.org/ndc_vocabulary:has-part">
78 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
79 |   </rdf:Description>
80 |   <rdf:Description rdf:about="http://bio2rdf.org/ndc_vocabulary:pharmagocological-class">
81 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
82 |   </rdf:Description>
83 |   <rdf:Description rdf:about="http://bio2rdf.org/ndc_vocabulary:package">
84 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
85 |   </rdf:Description>
86 | </rdf:RDF>
87 | 


--------------------------------------------------------------------------------
/2/ndc/catalog-v001.xml:
--------------------------------------------------------------------------------
1 | <?xml version="1.0" encoding="UTF-8" standalone="no"?>
2 | <catalog prefer="public" xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog">
3 |     <group id="Folder Repository, directory=, recursive=true, Auto-Update=true, version=2" prefer="public" xml:base="">
4 |         <uri id="Automatically generated entry, Timestamp=1355327874071" name="http://www.bio2rdf.org/bio2rdf_ndc_sio_mapping.owl" uri="bio2rdf_ndc_sio_mapping.owl"/>
5 |     </group>
6 | </catalog>
7 | 


--------------------------------------------------------------------------------
/2/omim/catalog-v001.xml:
--------------------------------------------------------------------------------
1 | <?xml version="1.0" encoding="UTF-8" standalone="no"?>
2 | <catalog prefer="public" xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog">
3 |     <uri id="Imports Wizard Entry" name="http://bio2rdf.org/bio2rdf_omim_vocabulary.owl" uri="bio2rdf_omim_vocabulary.owl"/>
4 |     <group id="Folder Repository, directory=, recursive=true, Auto-Update=true, version=2" prefer="public" xml:base="">
5 |         <uri id="Automatically generated entry, Timestamp=1350333177377" name="http://bio2rdf.org/bio2rdf_omim_sio_mapping.owl" uri="bio2rdf_omim_sio_mapping.owl"/>
6 |         <uri id="Automatically generated entry, Timestamp=1350333177377" name="http://www.w3.org/2002/07/owl" uri="bio2rdf_omim_vocabulary.owl"/>
7 |     </group>
8 | </catalog>
9 | 


--------------------------------------------------------------------------------
/2/pharmgkb/bio2rdf_pharmgkb_sio_mapping.owl:
--------------------------------------------------------------------------------
  1 | <?xml version="1.0"?>
  2 | 
  3 | 
  4 | <!DOCTYPE rdf:RDF [
  5 |     <!ENTITY terms "http://purl.org/dc/terms/" >
  6 |     <!ENTITY owl "http://www.w3.org/2002/07/owl#" >
  7 |     <!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
  8 |     <!ENTITY resource "http://semanticscience.org/resource/" >
  9 |     <!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
 10 |     <!ENTITY dataset_vocabulary "http://bio2rdf.org/dataset_vocabulary:" >
 11 |     <!ENTITY pharmgkb_vocabulary "http://bio2rdf.org/pharmgkb_vocabulary:" >
 12 |     <!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
 13 | ]>
 14 | 
 15 | 
 16 | <rdf:RDF xmlns="http://bio2rdf.org/bio2rdf_pharmgkb_sio_mapping.owl#"
 17 |      xml:base="http://bio2rdf.org/bio2rdf_pharmgkb_sio_mapping.owl"
 18 |      xmlns:dataset_vocabulary="http://bio2rdf.org/dataset_vocabulary:"
 19 |      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
 20 |      xmlns:pharmgkb_vocabulary="http://bio2rdf.org/pharmgkb_vocabulary:"
 21 |      xmlns:terms="http://purl.org/dc/terms/"
 22 |      xmlns:resource="http://semanticscience.org/resource/"
 23 |      xmlns:owl="http://www.w3.org/2002/07/owl#"
 24 |      xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
 25 |      xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
 26 |     <owl:Ontology rdf:about="http://bio2rdf.org/bio2rdf_pharmgkb_sio_mapping.owl">
 27 |         <terms:creator rdf:datatype="&xsd;Name">Jose Cruz-Toledo</terms:creator>
 28 |         <owl:imports rdf:resource="http://bio2rdf.org/bio2rdf_pharmgkb_vocabulary.owl"/>
 29 |         <owl:imports rdf:resource="http://semanticscience.org/ontology/sio.owl"/>
 30 |     </owl:Ontology>
 31 |     
 32 | 
 33 | 
 34 |     <!-- 
 35 |     ///////////////////////////////////////////////////////////////////////////////////////
 36 |     //
 37 |     // Annotation properties
 38 |     //
 39 |     ///////////////////////////////////////////////////////////////////////////////////////
 40 |      -->
 41 | 
 42 |     
 43 | 
 44 | 
 45 |     <!-- 
 46 |     ///////////////////////////////////////////////////////////////////////////////////////
 47 |     //
 48 |     // Object Properties
 49 |     //
 50 |     ///////////////////////////////////////////////////////////////////////////////////////
 51 |      -->
 52 | 
 53 |     
 54 | 
 55 | 
 56 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:chemical -->
 57 | 
 58 |     <rdf:Description rdf:about="&pharmgkb_vocabulary;chemical">
 59 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 60 |     </rdf:Description>
 61 |     
 62 | 
 63 | 
 64 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:drug -->
 65 | 
 66 |     <rdf:Description rdf:about="&pharmgkb_vocabulary;drug">
 67 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 68 |     </rdf:Description>
 69 |     
 70 | 
 71 | 
 72 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:gene -->
 73 | 
 74 |     <rdf:Description rdf:about="&pharmgkb_vocabulary;gene">
 75 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 76 |     </rdf:Description>
 77 |     
 78 | 
 79 | 
 80 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:haplotype -->
 81 | 
 82 |     <rdf:Description rdf:about="&pharmgkb_vocabulary;haplotype">
 83 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 84 |     </rdf:Description>
 85 |     
 86 | 
 87 | 
 88 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:in-sider -->
 89 | 
 90 |     <rdf:Description rdf:about="&pharmgkb_vocabulary;in-sider">
 91 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 92 |     </rdf:Description>
 93 |     
 94 | 
 95 | 
 96 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:name -->
 97 | 
 98 |     <rdf:Description rdf:about="&pharmgkb_vocabulary;name">
 99 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
100 |     </rdf:Description>
101 |     
102 | 
103 | 
104 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:pd_relationship -->
105 | 
106 |     <rdf:Description rdf:about="&pharmgkb_vocabulary;pd_relationship">
107 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
108 |     </rdf:Description>
109 |     
110 | 
111 | 
112 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:variantlocation -->
113 | 
114 |     <rdf:Description rdf:about="&pharmgkb_vocabulary;variantlocation">
115 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
116 |     </rdf:Description>
117 |     
118 | 
119 | 
120 |     <!-- 
121 |     ///////////////////////////////////////////////////////////////////////////////////////
122 |     //
123 |     // Classes
124 |     //
125 |     ///////////////////////////////////////////////////////////////////////////////////////
126 |      -->
127 | 
128 |     
129 | 
130 | 
131 |     <!-- http://bio2rdf.org/dataset_vocabulary:Endpoint -->
132 | 
133 |     <rdf:Description rdf:about="&dataset_vocabulary;Endpoint">
134 |         <rdfs:subClassOf rdf:resource="&resource;SIO_000750"/>
135 |     </rdf:Description>
136 |     
137 | 
138 | 
139 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:Association -->
140 | 
141 |     <rdf:Description rdf:about="&pharmgkb_vocabulary;Association">
142 |         <rdfs:subClassOf rdf:resource="&resource;SIO_000897"/>
143 |     </rdf:Description>
144 |     
145 | 
146 | 
147 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:Chemical -->
148 | 
149 |     <rdf:Description rdf:about="&pharmgkb_vocabulary;Chemical">
150 |         <rdfs:subClassOf rdf:resource="&resource;SIO_010004"/>
151 |     </rdf:Description>
152 |     
153 | 
154 | 
155 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:Disease -->
156 | 
157 |     <rdf:Description rdf:about="&pharmgkb_vocabulary;Disease">
158 |         <rdfs:subClassOf rdf:resource="&resource;SIO_010299"/>
159 |     </rdf:Description>
160 |     
161 | 
162 | 
163 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:Disease-Gene-Association -->
164 | 
165 |     <rdf:Description rdf:about="&pharmgkb_vocabulary;Disease-Gene-Association">
166 |         <rdfs:subClassOf rdf:resource="&resource;SIO_000983"/>
167 |     </rdf:Description>
168 |     
169 | 
170 | 
171 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:Disease-Haplotype-Association -->
172 | 
173 |     <rdf:Description rdf:about="&pharmgkb_vocabulary;Disease-Haplotype-Association">
174 |         <rdfs:subClassOf rdf:resource="&resource;SIO_000897"/>
175 |     </rdf:Description>
176 |     
177 | 
178 | 
179 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:Disease-VariantLocation-Association -->
180 | 
181 |     <rdf:Description rdf:about="&pharmgkb_vocabulary;Disease-VariantLocation-Association">
182 |         <rdfs:subClassOf rdf:resource="&resource;SIO_000897"/>
183 |     </rdf:Description>
184 |     
185 | 
186 | 
187 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:Drug -->
188 | 
189 |     <rdf:Description rdf:about="&pharmgkb_vocabulary;Drug">
190 |         <rdfs:subClassOf rdf:resource="&resource;SIO_010038"/>
191 |     </rdf:Description>
192 |     
193 | 
194 | 
195 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:Drug-Drug-Association -->
196 | 
197 |     <rdf:Description rdf:about="&pharmgkb_vocabulary;Drug-Drug-Association">
198 |         <rdfs:subClassOf rdf:resource="&resource;SIO_000897"/>
199 |     </rdf:Description>
200 |     
201 | 
202 | 
203 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:Drug-Gene-Association -->
204 | 
205 |     <rdf:Description rdf:about="&pharmgkb_vocabulary;Drug-Gene-Association">
206 |         <rdfs:subClassOf rdf:resource="&resource;SIO_000897"/>
207 |     </rdf:Description>
208 |     
209 | 
210 | 
211 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:Drug-Haplotype-Association -->
212 | 
213 |     <rdf:Description rdf:about="&pharmgkb_vocabulary;Drug-Haplotype-Association">
214 |         <rdfs:subClassOf rdf:resource="&resource;SIO_000897"/>
215 |     </rdf:Description>
216 |     
217 | 
218 | 
219 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:Drug-VariantLocation-Association -->
220 | 
221 |     <rdf:Description rdf:about="&pharmgkb_vocabulary;Drug-VariantLocation-Association">
222 |         <rdfs:subClassOf rdf:resource="&resource;SIO_000897"/>
223 |     </rdf:Description>
224 |     
225 | 
226 | 
227 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:Event -->
228 | 
229 |     <rdf:Description rdf:about="&pharmgkb_vocabulary;Event">
230 |         <rdfs:subClassOf rdf:resource="&resource;SIO_000006"/>
231 |     </rdf:Description>
232 |     
233 | 
234 | 
235 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:Gene -->
236 | 
237 |     <rdf:Description rdf:about="&pharmgkb_vocabulary;Gene">
238 |         <rdfs:subClassOf rdf:resource="&resource;SIO_010035"/>
239 |     </rdf:Description>
240 |     
241 | 
242 | 
243 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:Gene-Gene-Association -->
244 | 
245 |     <rdf:Description rdf:about="&pharmgkb_vocabulary;Gene-Gene-Association">
246 |         <rdfs:subClassOf rdf:resource="&resource;SIO_000897"/>
247 |     </rdf:Description>
248 |     
249 | 
250 | 
251 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:Pathway -->
252 | 
253 |     <rdf:Description rdf:about="&pharmgkb_vocabulary;Pathway">
254 |         <rdfs:subClassOf rdf:resource="&resource;SIO_000015"/>
255 |     </rdf:Description>
256 |     
257 | 
258 | 
259 |     <!-- http://bio2rdf.org/pharmgkb_vocabulary:Side-Effect -->
260 | 
261 |     <rdf:Description rdf:about="&pharmgkb_vocabulary;Side-Effect">
262 |         <rdfs:subClassOf rdf:resource="&resource;SIO_000027"/>
263 |     </rdf:Description>
264 | </rdf:RDF>
265 | 
266 | 
267 | 
268 | <!-- Generated by the OWL API (version 3.2.3.1824) http://owlapi.sourceforge.net -->
269 | 
270 | 


--------------------------------------------------------------------------------
/2/pharmgkb/bio2rdf_pharmgkb_vocabulary.owl:
--------------------------------------------------------------------------------
  1 | <?xml version="1.0"?>
  2 | 
  3 | 
  4 | <!DOCTYPE rdf:RDF [
  5 |     <!ENTITY terms "http://purl.org/dc/terms/" >
  6 |     <!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
  7 |     <!ENTITY resource "http://semanticscience.org/resource/" >
  8 |     <!ENTITY pharmgkb_vocabulary "http://bio2rdf.org/pharmgkb_vocabulary:" >
  9 |     <!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
 10 |     <!ENTITY dataset_vocabulary "http://bio2rdf.org/dataset_vocabulary:" >
 11 |     <!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
 12 | ]>
 13 | 
 14 | 
 15 | <rdf:RDF xmlns="http://www.w3.org/2002/07/owl#"
 16 |      xml:base="http://www.w3.org/2002/07/owl"
 17 |      xmlns:dataset_vocabulary="http://bio2rdf.org/dataset_vocabulary:"
 18 |      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
 19 |      xmlns:terms="http://purl.org/dc/terms/"
 20 |      xmlns:resource="http://semanticscience.org/resource/"
 21 |      xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
 22 |      xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
 23 |      xmlns:pharmgkb_vocabulary="http://bio2rdf.org/pharmgkb_vocabulary:">
 24 |     <Ontology rdf:about="http://bio2rdf.org/bio2rdf_pharmgkb_vocabulary.owl">
 25 |         <terms:creator rdf:datatype="&xsd;Name">Jose Cruz-Toledo</terms:creator>
 26 |     </Ontology>
 27 |   <rdf:Description rdf:about="http://bio2rdf.org/pharmgkb_vocabulary:drug">
 28 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
 29 |   </rdf:Description>
 30 |   <rdf:Description rdf:about="http://bio2rdf.org/pharmgkb_vocabulary:pd_relationship">
 31 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
 32 |   </rdf:Description>
 33 |   <rdf:Description rdf:about="http://bio2rdf.org/pharmgkb_vocabulary:variantlocation">
 34 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
 35 |   </rdf:Description>
 36 |   <rdf:Description rdf:about="http://bio2rdf.org/pharmgkb_vocabulary:haplotype">
 37 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
 38 |   </rdf:Description>
 39 |   <rdf:Description rdf:about="http://bio2rdf.org/pharmgkb_vocabulary:name">
 40 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
 41 |   </rdf:Description>
 42 |   <rdf:Description rdf:about="http://bio2rdf.org/pharmgkb_vocabulary:gene">
 43 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
 44 |   </rdf:Description>
 45 | 
 46 |     <rdf:Description rdf:about="http://bio2rdf.org/pharmgkb_vocabulary:in-sider">
 47 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
 48 |   </rdf:Description>
 49 |   <rdf:Description rdf:about="http://bio2rdf.org/pharmgkb_vocabulary:chemical">
 50 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
 51 |   </rdf:Description>
 52 | 
 53 |    <rdf:Description rdf:about="http://bio2rdf.org/pharmgkb_vocabulary:Side-Effect">
 54 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class" />
 55 |   </rdf:Description>
 56 |   <rdf:Description rdf:about="http://bio2rdf.org/pharmgkb_vocabulary:Chemical">
 57 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class" />
 58 |   </rdf:Description>
 59 |   <rdf:Description rdf:about="http://bio2rdf.org/pharmgkb_vocabulary:Event">
 60 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class" />
 61 |   </rdf:Description>
 62 |   <rdf:Description rdf:about="http://bio2rdf.org/pharmgkb_vocabulary:Drug">
 63 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class" />
 64 |   </rdf:Description>
 65 |   <rdf:Description rdf:about="http://bio2rdf.org/pharmgkb_vocabulary:Association">
 66 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class" />
 67 |   </rdf:Description>
 68 |   <rdf:Description rdf:about="http://bio2rdf.org/pharmgkb_vocabulary:Drug-VariantLocation-Association">
 69 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class" />
 70 |   </rdf:Description>
 71 |   <rdf:Description rdf:about="http://bio2rdf.org/pharmgkb_vocabulary:Disease-Haplotype-Association">
 72 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class" />
 73 |   </rdf:Description>
 74 |   <rdf:Description rdf:about="http://bio2rdf.org/pharmgkb_vocabulary:Drug-Gene-Association">
 75 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class" />
 76 |   </rdf:Description>
 77 |   <rdf:Description rdf:about="http://bio2rdf.org/pharmgkb_vocabulary:Gene-Gene-Association">
 78 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class" />
 79 |   </rdf:Description>
 80 |   <rdf:Description rdf:about="http://bio2rdf.org/pharmgkb_vocabulary:Disease-Gene-Association">
 81 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class" />
 82 |   </rdf:Description>
 83 |   <rdf:Description rdf:about="http://bio2rdf.org/pharmgkb_vocabulary:Drug-Haplotype-Association">
 84 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class" />
 85 |   </rdf:Description>
 86 |   <rdf:Description rdf:about="http://bio2rdf.org/pharmgkb_vocabulary:Drug-Drug-Association">
 87 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class" />
 88 |   </rdf:Description>
 89 |   <rdf:Description rdf:about="http://bio2rdf.org/pharmgkb_vocabulary:Disease-VariantLocation-Association">
 90 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class" />
 91 |   </rdf:Description>
 92 |   <rdf:Description rdf:about="http://bio2rdf.org/pharmgkb_vocabulary:Pathway">
 93 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class" />
 94 |   </rdf:Description>
 95 |   <rdf:Description rdf:about="http://bio2rdf.org/pharmgkb_vocabulary:Gene">
 96 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class" />
 97 |   </rdf:Description>
 98 |   <rdf:Description rdf:about="http://bio2rdf.org/pharmgkb_vocabulary:Disease">
 99 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class" />
100 |   </rdf:Description>
101 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:Endpoint">
102 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class" />
103 |   </rdf:Description>
104 | 
105 | </rdf:RDF>


--------------------------------------------------------------------------------
/2/pharmgkb/catalog-v001.xml:
--------------------------------------------------------------------------------
1 | <?xml version="1.0" encoding="UTF-8" standalone="no"?>
2 | <catalog prefer="public" xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog">
3 |     <uri id="Imports Wizard Entry" name="http://bio2rdf.org/bio2rdf_pharmgkb_vocabulary.owl" uri="bio2rdf_pharmgkb_vocabulary.owl"/>
4 |     <group id="Folder Repository, directory=, recursive=true, Auto-Update=true, version=2" prefer="public" xml:base="">
5 |         <uri id="Automatically generated entry, Timestamp=1350352322369" name="http://bio2rdf.org/bio2rdf_pharmgkb_sio_mapping.owl" uri="bio2rdf_pharmgkb_sio_mapping.owl"/>
6 |         <uri id="Automatically generated entry, Timestamp=1350352322369" name="http://www.w3.org/2002/07/owl" uri="bio2rdf_pharmgkb_vocabulary.owl"/>
7 |     </group>
8 | </catalog>
9 | 


--------------------------------------------------------------------------------
/2/sabiork/bio2rdf_sabiork_sio_mapping.owl:
--------------------------------------------------------------------------------
  1 | <?xml version="1.0"?>
  2 | 
  3 | 
  4 | <!DOCTYPE rdf:RDF [
  5 |     <!ENTITY terms "http://purl.org/dc/terms/" >
  6 |     <!ENTITY owl "http://www.w3.org/2002/07/owl#" >
  7 |     <!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
  8 |     <!ENTITY resource "http://semanticscience.org/resource/" >
  9 |     <!ENTITY biopax_vocabulary "http://bio2rdf.org/biopax_vocabulary:" >
 10 |     <!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
 11 |     <!ENTITY dataset_vocabulary "http://bio2rdf.org/dataset_vocabulary:" >
 12 |     <!ENTITY sabiork_vocabulary "http://bio2rdf.org/sabiork_vocabulary:" >
 13 |     <!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
 14 | ]>
 15 | 
 16 | 
 17 | <rdf:RDF xmlns="http://bio2rdf.org/bio2rdf_sabiork_sio_mapping.owl#"
 18 |      xml:base="http://bio2rdf.org/bio2rdf_sabiork_sio_mapping.owl"
 19 |      xmlns:dataset_vocabulary="http://bio2rdf.org/dataset_vocabulary:"
 20 |      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
 21 |      xmlns:biopax_vocabulary="http://bio2rdf.org/biopax_vocabulary:"
 22 |      xmlns:sabiork_vocabulary="http://bio2rdf.org/sabiork_vocabulary:"
 23 |      xmlns:terms="http://purl.org/dc/terms/"
 24 |      xmlns:resource="http://semanticscience.org/resource/"
 25 |      xmlns:owl="http://www.w3.org/2002/07/owl#"
 26 |      xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
 27 |      xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
 28 |     <owl:Ontology rdf:about="http://bio2rdf.org/bio2rdf_sabiork_sio_mapping.owl">
 29 |         <terms:creator rdf:datatype="&xsd;Name">Jose Cruz-Toledo</terms:creator>
 30 |         <owl:imports rdf:resource="http://bio2rdf.org/bio2rdf_sabiork_vocabulary.owl"/>
 31 |         <owl:imports rdf:resource="http://semanticscience.org/ontology/sio.owl"/>
 32 |     </owl:Ontology>
 33 |     
 34 | 
 35 | 
 36 |     <!-- 
 37 |     ///////////////////////////////////////////////////////////////////////////////////////
 38 |     //
 39 |     // Annotation properties
 40 |     //
 41 |     ///////////////////////////////////////////////////////////////////////////////////////
 42 |      -->
 43 | 
 44 |     
 45 | 
 46 | 
 47 |     <!-- 
 48 |     ///////////////////////////////////////////////////////////////////////////////////////
 49 |     //
 50 |     // Object Properties
 51 |     //
 52 |     ///////////////////////////////////////////////////////////////////////////////////////
 53 |      -->
 54 | 
 55 |     
 56 | 
 57 | 
 58 |     <!-- http://bio2rdf.org/biopax_vocabulary:identical-to -->
 59 | 
 60 |     <rdf:Description rdf:about="&biopax_vocabulary;identical-to">
 61 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 62 |     </rdf:Description>
 63 |     
 64 | 
 65 | 
 66 |     <!-- http://bio2rdf.org/biopax_vocabulary:publication -->
 67 | 
 68 |     <rdf:Description rdf:about="&biopax_vocabulary;publication">
 69 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 70 |     </rdf:Description>
 71 |     
 72 | 
 73 | 
 74 |     <!-- http://bio2rdf.org/biopax_vocabulary:related-to -->
 75 | 
 76 |     <rdf:Description rdf:about="&biopax_vocabulary;related-to">
 77 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 78 |     </rdf:Description>
 79 |     
 80 | 
 81 | 
 82 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_count -->
 83 | 
 84 |     <rdf:Description rdf:about="&dataset_vocabulary;has_count">
 85 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 86 |     </rdf:Description>
 87 |     
 88 | 
 89 | 
 90 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_literal_count -->
 91 | 
 92 |     <rdf:Description rdf:about="&dataset_vocabulary;has_literal_count">
 93 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 94 |     </rdf:Description>
 95 |     
 96 | 
 97 | 
 98 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_object_count -->
 99 | 
100 |     <rdf:Description rdf:about="&dataset_vocabulary;has_object_count">
101 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
102 |     </rdf:Description>
103 |     
104 | 
105 | 
106 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_object_type -->
107 | 
108 |     <rdf:Description rdf:about="&dataset_vocabulary;has_object_type">
109 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
110 |     </rdf:Description>
111 |     
112 | 
113 | 
114 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_predicate -->
115 | 
116 |     <rdf:Description rdf:about="&dataset_vocabulary;has_predicate">
117 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
118 |     </rdf:Description>
119 |     
120 | 
121 | 
122 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_predicate_literal_count -->
123 | 
124 |     <rdf:Description rdf:about="&dataset_vocabulary;has_predicate_literal_count">
125 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
126 |     </rdf:Description>
127 |     
128 | 
129 | 
130 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_predicate_object_count -->
131 | 
132 |     <rdf:Description rdf:about="&dataset_vocabulary;has_predicate_object_count">
133 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
134 |     </rdf:Description>
135 |     
136 | 
137 | 
138 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_predicate_unique_subject_unique_literal_count -->
139 | 
140 |     <rdf:Description rdf:about="&dataset_vocabulary;has_predicate_unique_subject_unique_literal_count">
141 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
142 |     </rdf:Description>
143 |     
144 | 
145 | 
146 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_predicate_unique_subject_unique_object_count -->
147 | 
148 |     <rdf:Description rdf:about="&dataset_vocabulary;has_predicate_unique_subject_unique_object_count">
149 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
150 |     </rdf:Description>
151 |     
152 | 
153 | 
154 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_subject_count -->
155 | 
156 |     <rdf:Description rdf:about="&dataset_vocabulary;has_subject_count">
157 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
158 |     </rdf:Description>
159 |     
160 | 
161 | 
162 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_subject_type -->
163 | 
164 |     <rdf:Description rdf:about="&dataset_vocabulary;has_subject_type">
165 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
166 |     </rdf:Description>
167 |     
168 | 
169 | 
170 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_triple_count -->
171 | 
172 |     <rdf:Description rdf:about="&dataset_vocabulary;has_triple_count">
173 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
174 |     </rdf:Description>
175 |     
176 | 
177 | 
178 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_type -->
179 | 
180 |     <rdf:Description rdf:about="&dataset_vocabulary;has_type">
181 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
182 |     </rdf:Description>
183 |     
184 | 
185 | 
186 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_type_count -->
187 | 
188 |     <rdf:Description rdf:about="&dataset_vocabulary;has_type_count">
189 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
190 |     </rdf:Description>
191 |     
192 | 
193 | 
194 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_type_relation_type_count -->
195 | 
196 |     <rdf:Description rdf:about="&dataset_vocabulary;has_type_relation_type_count">
197 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
198 |     </rdf:Description>
199 |     
200 | 
201 | 
202 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_unique_object_count -->
203 | 
204 |     <rdf:Description rdf:about="&dataset_vocabulary;has_unique_object_count">
205 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
206 |     </rdf:Description>
207 |     
208 | 
209 | 
210 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_unique_predicate_count -->
211 | 
212 |     <rdf:Description rdf:about="&dataset_vocabulary;has_unique_predicate_count">
213 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
214 |     </rdf:Description>
215 |     
216 | 
217 | 
218 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_unique_subject_count -->
219 | 
220 |     <rdf:Description rdf:about="&dataset_vocabulary;has_unique_subject_count">
221 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
222 |     </rdf:Description>
223 |     
224 | 
225 | 
226 |     <!-- http://bio2rdf.org/dataset_vocabulary:has_url -->
227 | 
228 |     <rdf:Description rdf:about="&dataset_vocabulary;has_url">
229 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
230 |     </rdf:Description>
231 |     
232 | 
233 | 
234 |     <!-- 
235 |     ///////////////////////////////////////////////////////////////////////////////////////
236 |     //
237 |     // Classes
238 |     //
239 |     ///////////////////////////////////////////////////////////////////////////////////////
240 |      -->
241 | 
242 |     
243 | 
244 | 
245 |     <!-- http://bio2rdf.org/dataset_vocabulary:Endpoint -->
246 | 
247 |     <rdf:Description rdf:about="&dataset_vocabulary;Endpoint">
248 |         <rdfs:subClassOf rdf:resource="&resource;SIO_000750"/>
249 |     </rdf:Description>
250 | </rdf:RDF>
251 | 
252 | 
253 | 
254 | <!-- Generated by the OWL API (version 3.2.3.1824) http://owlapi.sourceforge.net -->
255 | 
256 | 


--------------------------------------------------------------------------------
/2/sabiork/bio2rdf_sabiork_vocabulary.owl:
--------------------------------------------------------------------------------
 1 | <?xml version="1.0"?>
 2 | 
 3 | 
 4 | <!DOCTYPE rdf:RDF [
 5 |     <!ENTITY terms "http://purl.org/dc/terms/" >
 6 |     <!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
 7 |     <!ENTITY sabiork_vocabulary "http://bio2rdf.org/ctd_vocabulary:" >
 8 |     <!ENTITY resource "http://semanticscience.org/resource/" >
 9 |     <!ENTITY taxon_vocabulary "http://bio2rdf.org/taxon_vocabulary:" >
10 |     <!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
11 |     <!ENTITY dataset_vocabulary "http://bio2rdf.org/dataset_vocabulary:" >
12 |     <!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
13 | ]>
14 | 
15 | 
16 | <rdf:RDF xmlns="http://www.w3.org/2002/07/owl#"
17 |      xml:base="http://www.w3.org/2002/07/owl"
18 |      xmlns:dataset_vocabulary="http://bio2rdf.org/dataset_vocabulary:"
19 |      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
20 |      xmlns:terms="http://purl.org/dc/terms/"
21 |      xmlns:resource="http://semanticscience.org/resource/"
22 |      xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
23 |      xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
24 |      xmlns:sabiork_vocabulary="http://bio2rdf.org/sabiork_vocabulary:">
25 |     <Ontology rdf:about="http://bio2rdf.org/bio2rdf_sabiork_vocabulary.owl">
26 |         <terms:creator rdf:datatype="&xsd;Name">Jose Cruz-Toledo</terms:creator>
27 |     </Ontology>
28 | 
29 | <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:Endpoint">
30 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class" />
31 |   </rdf:Description>
32 |     <rdf:Description rdf:about="http://bio2rdf.org/biopax_vocabulary:identical-to">
33 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
34 |   </rdf:Description>
35 |   <rdf:Description rdf:about="http://bio2rdf.org/biopax_vocabulary:related-to">
36 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
37 |   </rdf:Description>
38 |   <rdf:Description rdf:about="http://bio2rdf.org/biopax_vocabulary:publication">
39 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
40 |   </rdf:Description>
41 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_unique_predicate_count">
42 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
43 |   </rdf:Description>
44 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_predicate_literal_count">
45 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
46 |   </rdf:Description>
47 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_predicate_unique_subject_unique_object_count">
48 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
49 |   </rdf:Description>
50 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_object_type">
51 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
52 |   </rdf:Description>
53 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_url">
54 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
55 |   </rdf:Description>
56 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_unique_subject_count">
57 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
58 |   </rdf:Description>
59 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_type_count">
60 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
61 |   </rdf:Description>
62 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_count">
63 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
64 |   </rdf:Description>
65 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_predicate_object_count">
66 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
67 |   </rdf:Description>
68 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_subject_count">
69 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
70 |   </rdf:Description>
71 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_subject_type">
72 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
73 |   </rdf:Description>
74 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_triple_count">
75 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
76 |   </rdf:Description>
77 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_unique_object_count">
78 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
79 |   </rdf:Description>
80 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_type">
81 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
82 |   </rdf:Description>
83 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_predicate">
84 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
85 |   </rdf:Description>
86 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_predicate_unique_subject_unique_literal_count">
87 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
88 |   </rdf:Description>
89 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_literal_count">
90 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
91 |   </rdf:Description>
92 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_object_count">
93 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
94 |   </rdf:Description>
95 |   <rdf:Description rdf:about="http://bio2rdf.org/dataset_vocabulary:has_type_relation_type_count">
96 |     <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty" />
97 |   </rdf:Description>
98 |     
99 | </rdf:RDF>


--------------------------------------------------------------------------------
/2/sabiork/catalog-v001.xml:
--------------------------------------------------------------------------------
1 | <?xml version="1.0" encoding="UTF-8" standalone="no"?>
2 | <catalog prefer="public" xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog">
3 |     <uri id="Imports Wizard Entry" name="http://bio2rdf.org/bio2rdf_sabiork_vocabulary.owl" uri="bio2rdf_sabiork_vocabulary.owl"/>
4 |     <group id="Folder Repository, directory=, recursive=true, Auto-Update=true, version=2" prefer="public" xml:base="">
5 |         <uri id="Automatically generated entry, Timestamp=1350333444216" name="http://bio2rdf.org/bio2rdf_sabiork_sio_mapping.owl" uri="bio2rdf_sabiork_sio_mapping.owl"/>
6 |         <uri id="Automatically generated entry, Timestamp=1350333444216" name="http://www.w3.org/2002/07/owl" uri="bio2rdf_sabiork_vocabulary.owl"/>
7 |     </group>
8 | </catalog>
9 | 


--------------------------------------------------------------------------------
/2/sgd/catalog-v001.xml:
--------------------------------------------------------------------------------
 1 | <?xml version="1.0" encoding="UTF-8" standalone="no"?>
 2 | <catalog prefer="public" xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog">
 3 |     <uri id="Imports Wizard Entry" name="http://bio2rdf.org/bio2rdf_sgd_vocabulary.owl" uri="bio2rdf_sgd_vocabulary.owl"/>
 4 |     <uri id="Imports Wizard Entry" name="http://bio2rdf.org/bio2rdf_sgd_sio_mapping.owl" uri="bio2rdf_sgd_sio_mapping.owl"/>
 5 |     <group id="Folder Repository, directory=, recursive=true, Auto-Update=true, version=2" prefer="public" xml:base="">
 6 |         <uri id="Automatically generated entry, Timestamp=1350334637190" name="http://bio2rdf.org/bio2rdf_drugbank_sio_mapping.owl" uri="bio2rdf_sgd_sio_mapping.owl"/>
 7 |         <uri id="Automatically generated entry, Timestamp=1350334637190" name="http://www.w3.org/2002/07/owl" uri="bio2rdf_sgd_vocabulary.owl"/>
 8 |     </group>
 9 | </catalog>
10 | 


--------------------------------------------------------------------------------
/2/taxonomy/bio2rdf_taxonomy_sio_mapping.owl:
--------------------------------------------------------------------------------
  1 | <?xml version="1.0"?>
  2 | 
  3 | 
  4 | <!DOCTYPE rdf:RDF [
  5 |     <!ENTITY terms "http://purl.org/dc/terms/" >
  6 |     <!ENTITY owl "http://www.w3.org/2002/07/owl#" >
  7 |     <!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
  8 |     <!ENTITY resource "http://semanticscience.org/resource/" >
  9 |     <!ENTITY taxon_vocabulary "http://bio2rdf.org/taxon_vocabulary:" >
 10 |     <!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
 11 |     <!ENTITY dataset_vocabulary "http://bio2rdf.org/dataset_vocabulary:" >
 12 |     <!ENTITY taxonomy_vocabulary "http://bio2rdf.org/taxonomy_vocabulary:" >
 13 |     <!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
 14 | ]>
 15 | 
 16 | 
 17 | <rdf:RDF xmlns="http://bio2rdf.org/bio2rdf_drugbank_sio_mapping.owl#"
 18 |      xml:base="http://bio2rdf.org/bio2rdf_drugbank_sio_mapping.owl"
 19 |      xmlns:dataset_vocabulary="http://bio2rdf.org/dataset_vocabulary:"
 20 |      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
 21 |      xmlns:terms="http://purl.org/dc/terms/"
 22 |      xmlns:resource="http://semanticscience.org/resource/"
 23 |      xmlns:owl="http://www.w3.org/2002/07/owl#"
 24 |      xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
 25 |      xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
 26 |      xmlns:taxon_vocabulary="http://bio2rdf.org/taxon_vocabulary:"
 27 |      xmlns:taxonomy_vocabulary="http://bio2rdf.org/taxonomy_vocabulary:">
 28 |     <owl:Ontology rdf:about="http://bio2rdf.org/bio2rdf_taxonomy_sio_mapping.owl">
 29 |         <terms:creator rdf:datatype="&xsd;Name">Jose Cruz-Toledo</terms:creator>
 30 |         <rdfs:comment xml:lang="en">NCBI Taxonomy Bio2RDF SIO Mapping</rdfs:comment>
 31 |         <owl:imports rdf:resource="http://bio2rdf.org/bio2rdf_taxonomy_vocabulary.owl"/>
 32 |         <owl:imports rdf:resource="http://semanticscience.org/ontology/sio.owl"/>
 33 |     </owl:Ontology>
 34 |     
 35 | 
 36 | 
 37 |     <!-- 
 38 |     ///////////////////////////////////////////////////////////////////////////////////////
 39 |     //
 40 |     // Annotation properties
 41 |     //
 42 |     ///////////////////////////////////////////////////////////////////////////////////////
 43 |      -->
 44 | 
 45 |     
 46 | 
 47 | 
 48 |     <!-- 
 49 |     ///////////////////////////////////////////////////////////////////////////////////////
 50 |     //
 51 |     // Object Properties
 52 |     //
 53 |     ///////////////////////////////////////////////////////////////////////////////////////
 54 |      -->
 55 | 
 56 |     
 57 | 
 58 | 
 59 |     <!-- http://bio2rdf.org/taxon_vocabulary:citation -->
 60 | 
 61 |     <rdf:Description rdf:about="&taxon_vocabulary;citation">
 62 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 63 |     </rdf:Description>
 64 |     
 65 | 
 66 | 
 67 |     <!-- http://bio2rdf.org/taxon_vocabulary:citation_key -->
 68 | 
 69 |     <rdf:Description rdf:about="&taxon_vocabulary;citation_key">
 70 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 71 |     </rdf:Description>
 72 |     
 73 | 
 74 | 
 75 |     <!-- http://bio2rdf.org/taxon_vocabulary:comments -->
 76 | 
 77 |     <rdf:Description rdf:about="&taxon_vocabulary;comments">
 78 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 79 |     </rdf:Description>
 80 |     
 81 | 
 82 | 
 83 |     <!-- http://bio2rdf.org/taxon_vocabulary:division -->
 84 | 
 85 |     <rdf:Description rdf:about="&taxon_vocabulary;division">
 86 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000616"/>
 87 |     </rdf:Description>
 88 |     
 89 | 
 90 | 
 91 |     <!-- http://bio2rdf.org/taxon_vocabulary:division_code -->
 92 | 
 93 |     <rdf:Description rdf:about="&taxon_vocabulary;division_code">
 94 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
 95 |     </rdf:Description>
 96 |     
 97 | 
 98 | 
 99 |     <!-- http://bio2rdf.org/taxon_vocabulary:embl_code -->
100 | 
101 |     <rdf:Description rdf:about="&taxon_vocabulary;embl_code">
102 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
103 |     </rdf:Description>
104 |     
105 | 
106 | 
107 |     <!-- http://bio2rdf.org/taxon_vocabulary:genbank_hidden_flag -->
108 | 
109 |     <rdf:Description rdf:about="&taxon_vocabulary;genbank_hidden_flag">
110 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
111 |     </rdf:Description>
112 |     
113 | 
114 | 
115 |     <!-- http://bio2rdf.org/taxon_vocabulary:genetic_code -->
116 | 
117 |     <rdf:Description rdf:about="&taxon_vocabulary;genetic_code">
118 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
119 |     </rdf:Description>
120 |     
121 | 
122 | 
123 |     <!-- http://bio2rdf.org/taxon_vocabulary:inherited_division_flag -->
124 | 
125 |     <rdf:Description rdf:about="&taxon_vocabulary;inherited_division_flag">
126 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
127 |     </rdf:Description>
128 |     
129 | 
130 | 
131 |     <!-- http://bio2rdf.org/taxon_vocabulary:inherited_gc_flag -->
132 | 
133 |     <rdf:Description rdf:about="&taxon_vocabulary;inherited_gc_flag">
134 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
135 |     </rdf:Description>
136 |     
137 | 
138 | 
139 |     <!-- http://bio2rdf.org/taxon_vocabulary:inherited_mgc_flag -->
140 | 
141 |     <rdf:Description rdf:about="&taxon_vocabulary;inherited_mgc_flag">
142 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
143 |     </rdf:Description>
144 |     
145 | 
146 | 
147 |     <!-- http://bio2rdf.org/taxon_vocabulary:name_class -->
148 | 
149 |     <rdf:Description rdf:about="&taxon_vocabulary;name_class">
150 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
151 |     </rdf:Description>
152 |     
153 | 
154 | 
155 |     <!-- http://bio2rdf.org/taxon_vocabulary:parent -->
156 | 
157 |     <rdf:Description rdf:about="&taxon_vocabulary;parent">
158 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
159 |     </rdf:Description>
160 |     
161 | 
162 | 
163 |     <!-- http://bio2rdf.org/taxon_vocabulary:text -->
164 | 
165 |     <rdf:Description rdf:about="&taxon_vocabulary;text">
166 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
167 |     </rdf:Description>
168 |     
169 | 
170 | 
171 |     <!-- http://bio2rdf.org/taxon_vocabulary:translation_table -->
172 | 
173 |     <rdf:Description rdf:about="&taxon_vocabulary;translation_table">
174 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
175 |     </rdf:Description>
176 |     
177 | 
178 | 
179 |     <!-- http://bio2rdf.org/taxon_vocabulary:unique_name -->
180 | 
181 |     <rdf:Description rdf:about="&taxon_vocabulary;unique_name">
182 |         <rdfs:subPropertyOf rdf:resource="&resource;SIO_000008"/>
183 |     </rdf:Description>
184 |     
185 | 
186 | 
187 |     <!-- http://semanticscience.org/resource/SIO_000616 -->
188 | 
189 |     <owl:ObjectProperty rdf:about="&resource;SIO_000616"/>
190 |     
191 | 
192 | 
193 |     <!-- 
194 |     ///////////////////////////////////////////////////////////////////////////////////////
195 |     //
196 |     // Classes
197 |     //
198 |     ///////////////////////////////////////////////////////////////////////////////////////
199 |      -->
200 | 
201 |     
202 | 
203 | 
204 |     <!-- http://bio2rdf.org/dataset_vocabulary:Endpoint -->
205 | 
206 |     <rdf:Description rdf:about="&dataset_vocabulary;Endpoint">
207 |         <rdfs:subClassOf rdf:resource="&resource;SIO_000750"/>
208 |     </rdf:Description>
209 |     
210 | 
211 | 
212 |     <!-- http://bio2rdf.org/taxon_vocabulary:citation -->
213 | 
214 |     <rdf:Description rdf:about="&taxon_vocabulary;citation">
215 |         <rdfs:subClassOf rdf:resource="&resource;SIO_000174"/>
216 |     </rdf:Description>
217 |     
218 | 
219 | 
220 |     <!-- http://bio2rdf.org/taxon_vocabulary:division -->
221 | 
222 |     <rdf:Description rdf:about="&taxon_vocabulary;division">
223 |         <rdfs:subClassOf rdf:resource="&resource;SIO_000015"/>
224 |     </rdf:Description>
225 |     
226 | 
227 | 
228 |     <!-- http://bio2rdf.org/taxon_vocabulary:genetic_code -->
229 | 
230 |     <rdf:Description rdf:about="&taxon_vocabulary;genetic_code">
231 |         <rdfs:subClassOf rdf:resource="&resource;SIO_010028"/>
232 |     </rdf:Description>
233 |     
234 | 
235 | 
236 |     <!-- http://bio2rdf.org/taxon_vocabulary:taxon -->
237 | 
238 |     <rdf:Description rdf:about="&taxon_vocabulary;taxon">
239 |         <rdfs:subClassOf rdf:resource="&resource;SIO_010019"/>
240 |     </rdf:Description>
241 | </rdf:RDF>
242 | 
243 | 
244 | 
245 | <!-- Generated by the OWL API (version 3.2.3.1824) http://owlapi.sourceforge.net -->
246 | 
247 | 


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/2/taxonomy/bio2rdf_taxonomy_vocabulary.owl:
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  1 | <?xml version="1.0"?>
  2 | 
  3 | 
  4 | <!DOCTYPE rdf:RDF [
  5 |     <!ENTITY terms "http://purl.org/dc/terms/" >
  6 |     <!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
  7 |     <!ENTITY taxonomy_vocabulary "http://bio2rdf.org/taxonomy_vocabulary:" >
  8 |     <!ENTITY resource "http://semanticscience.org/resource/" >
  9 |     <!ENTITY taxon_vocabulary "http://bio2rdf.org/taxon_vocabulary:" >
 10 |     <!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
 11 |     <!ENTITY dataset_vocabulary "http://bio2rdf.org/dataset_vocabulary:" >
 12 |     <!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
 13 | ]>
 14 | 
 15 | 
 16 | <rdf:RDF xmlns="http://www.w3.org/2002/07/owl#"
 17 |      xml:base="http://www.w3.org/2002/07/owl"
 18 |      xmlns:dataset_vocabulary="http://bio2rdf.org/dataset_vocabulary:"
 19 |      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
 20 |      xmlns:terms="http://purl.org/dc/terms/"
 21 |      xmlns:resource="http://semanticscience.org/resource/"
 22 |      xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
 23 |      xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
 24 |      xmlns:taxonomy_vocabulary="http://bio2rdf.org/taxonomy_vocabulary:"
 25 |      xmlns:taxon_vocabulary="http://bio2rdf.org/taxon_vocabulary:">
 26 |     <Ontology rdf:about="http://bio2rdf.org/bio2rdf_taxonomy_vocabulary.owl">
 27 |         <terms:creator rdf:datatype="&xsd;Name">Jose Cruz-Toledo</terms:creator>
 28 |     </Ontology>
 29 |     
 30 | 
 31 | 
 32 |     <!-- 
 33 |     ///////////////////////////////////////////////////////////////////////////////////////
 34 |     //
 35 |     // Annotation properties
 36 |     //
 37 |     ///////////////////////////////////////////////////////////////////////////////////////
 38 |      -->
 39 | 
 40 |     
 41 | 
 42 | 
 43 |     <!-- 
 44 |     ///////////////////////////////////////////////////////////////////////////////////////
 45 |     //
 46 |     // Object Properties
 47 |     //
 48 |     ///////////////////////////////////////////////////////////////////////////////////////
 49 |      -->
 50 | 
 51 |     
 52 | 
 53 | 
 54 |     <!-- http://bio2rdf.org/taxon_vocabulary:citation -->
 55 | 
 56 |     <ObjectProperty rdf:about="&taxon_vocabulary;citation"/>
 57 |     
 58 | 
 59 | 
 60 |     <!-- http://bio2rdf.org/taxon_vocabulary:citation_key -->
 61 | 
 62 |     <ObjectProperty rdf:about="&taxon_vocabulary;citation_key"/>
 63 |     
 64 | 
 65 | 
 66 |     <!-- http://bio2rdf.org/taxon_vocabulary:comments -->
 67 | 
 68 |     <ObjectProperty rdf:about="&taxon_vocabulary;comments"/>
 69 |     
 70 | 
 71 | 
 72 |     <!-- http://bio2rdf.org/taxon_vocabulary:division -->
 73 | 
 74 |     <ObjectProperty rdf:about="&taxon_vocabulary;division"/>
 75 |     
 76 | 
 77 | 
 78 |     <!-- http://bio2rdf.org/taxon_vocabulary:division_code -->
 79 | 
 80 |     <ObjectProperty rdf:about="&taxon_vocabulary;division_code"/>
 81 |     
 82 | 
 83 | 
 84 |     <!-- http://bio2rdf.org/taxon_vocabulary:embl_code -->
 85 | 
 86 |     <ObjectProperty rdf:about="&taxon_vocabulary;embl_code"/>
 87 |     
 88 | 
 89 | 
 90 |     <!-- http://bio2rdf.org/taxon_vocabulary:genbank_hidden_flag -->
 91 | 
 92 |     <ObjectProperty rdf:about="&taxon_vocabulary;genbank_hidden_flag"/>
 93 |     
 94 | 
 95 | 
 96 |     <!-- http://bio2rdf.org/taxon_vocabulary:genetic_code -->
 97 | 
 98 |     <ObjectProperty rdf:about="&taxon_vocabulary;genetic_code"/>
 99 |     
100 | 
101 | 
102 |     <!-- http://bio2rdf.org/taxon_vocabulary:inherited_division_flag -->
103 | 
104 |     <ObjectProperty rdf:about="&taxon_vocabulary;inherited_division_flag"/>
105 |     
106 | 
107 | 
108 |     <!-- http://bio2rdf.org/taxon_vocabulary:inherited_gc_flag -->
109 | 
110 |     <ObjectProperty rdf:about="&taxon_vocabulary;inherited_gc_flag"/>
111 |     
112 | 
113 | 
114 |     <!-- http://bio2rdf.org/taxon_vocabulary:inherited_mgc_flag -->
115 | 
116 |     <ObjectProperty rdf:about="&taxon_vocabulary;inherited_mgc_flag"/>
117 |     
118 | 
119 | 
120 |     <!-- http://bio2rdf.org/taxon_vocabulary:name_class -->
121 | 
122 |     <ObjectProperty rdf:about="&taxon_vocabulary;name_class"/>
123 |     
124 | 
125 | 
126 |     <!-- http://bio2rdf.org/taxon_vocabulary:parent -->
127 | 
128 |     <ObjectProperty rdf:about="&taxon_vocabulary;parent"/>
129 |     
130 | 
131 | 
132 |     <!-- http://bio2rdf.org/taxon_vocabulary:text -->
133 | 
134 |     <ObjectProperty rdf:about="&taxon_vocabulary;text"/>
135 |     
136 | 
137 | 
138 |     <!-- http://bio2rdf.org/taxon_vocabulary:translation_table -->
139 | 
140 |     <ObjectProperty rdf:about="&taxon_vocabulary;translation_table"/>
141 |     
142 | 
143 | 
144 |     <!-- http://bio2rdf.org/taxon_vocabulary:unique_name -->
145 | 
146 |     <ObjectProperty rdf:about="&taxon_vocabulary;unique_name"/>
147 |     
148 | 
149 | 
150 |     <!-- 
151 |     ///////////////////////////////////////////////////////////////////////////////////////
152 |     //
153 |     // Classes
154 |     //
155 |     ///////////////////////////////////////////////////////////////////////////////////////
156 |      -->
157 | 
158 |     
159 | 
160 | 
161 |     <!-- http://bio2rdf.org/dataset_vocabulary:Endpoint -->
162 | 
163 |     <Class rdf:about="&dataset_vocabulary;Endpoint"/>
164 |     
165 | 
166 | 
167 |     <!-- http://bio2rdf.org/taxon_vocabulary:citation -->
168 | 
169 |     <Class rdf:about="&taxon_vocabulary;citation"/>
170 |     
171 | 
172 | 
173 |     <!-- http://bio2rdf.org/taxon_vocabulary:division -->
174 | 
175 |     <Class rdf:about="&taxon_vocabulary;division"/>
176 |     
177 | 
178 | 
179 |     <!-- http://bio2rdf.org/taxon_vocabulary:genetic_code -->
180 | 
181 |     <Class rdf:about="&taxon_vocabulary;genetic_code"/>
182 |     
183 | 
184 | 
185 |     <!-- http://bio2rdf.org/taxon_vocabulary:taxon -->
186 | 
187 |     <Class rdf:about="&taxon_vocabulary;taxon"/>
188 | </rdf:RDF>
189 | 
190 | 
191 | 
192 | <!-- Generated by the OWL API (version 3.2.3.1824) http://owlapi.sourceforge.net -->
193 | 
194 | 


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/2/taxonomy/catalog-v001.xml:
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 1 | <?xml version="1.0" encoding="UTF-8" standalone="no"?>
 2 | <catalog prefer="public" xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog">
 3 |     <uri id="Imports Wizard Entry" name="http://bio2rdf.org/bio2rdf_taxonomy_vocabulary.owl" uri="bio2rdf_taxonomy_vocabulary.owl"/>
 4 |     <uri id="Imports Wizard Entry" name="http://bio2rdf.org/bio2rdf_taxonomy_sio_mapping.owl" uri="bio2rdf_taxonomy_sio_mapping.owl"/>
 5 |     <group id="Folder Repository, directory=, recursive=true, Auto-Update=true, version=2" prefer="public" xml:base="">
 6 |         <uri id="Automatically generated entry, Timestamp=1350333840843" name="http://bio2rdf.org/bio2rdf_drugbank_sio_mapping.owl" uri="bio2rdf_taxonomy_sio_mapping.owl"/>
 7 |         <uri id="Automatically generated entry, Timestamp=1350333840843" name="http://www.w3.org/2002/07/owl" uri="bio2rdf_taxonomy_vocabulary.owl"/>
 8 |     </group>
 9 | </catalog>
10 | 


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/3/README:
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1 | Mappings created using a (semi)automated procedure to generate high quality mappings between Bio2RDF and SIO. Specifically, Bio2RDF-SIO mappings are inferred 
2 | by mapping Bio2RDF and SIO classes to biomedical ontologies contained in the NCBO BioPortal, and consequently use their hierarchies to find indirect Bio2RDF 
3 | type to SIO class mappings.  
4 | Paper: http://ceur-ws.org/Vol-1709/BMDID_2016_paper_11.pdf
5 | Presentation: http://www.slideshare.net/micheldumontier/2016-bmdidmappings
6 | 


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/README:
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 1 | BIO2RDF-MAPPINGS
 2 | ================
 3 | 
 4 | Here you will find OWL ontology files with all classes and object properties used by our scripts. The directories at the top most level reflect the corresponding Bio2RDF release. In each release sub-directory there will be 3 files:
 5 | 1) [DATASETNAME]_sio_mapping.owl: This file has mappings of all classes, object properties and annotation properties to the Semanticscience Integrated Ontology (http://code.google.com/p/semanticscience/wiki/SIO)
 6 | 
 7 | 2) [DATABASENAME]_vocabulary.owl: A list of all classes, object properties and annotation properties used by the corresponding bio2rdf-script
 8 | 
 9 | 3) catalog-v001.xml: A mapping file to enable local import of 1) and 2). For more details see: http://protegewiki.stanford.edu/wiki/How_Owl_2.0_Imports_Work
10 | 


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