├── .coveragerc ├── .gitignore ├── .travis.yml ├── CHANGELOG.md ├── COPYING.txt ├── LICENSE ├── Makefile ├── README.md ├── ci └── conda_requirements.txt ├── data ├── Workbook4.txt ├── feature-table.biom ├── redsea │ ├── feature_metadata.txt │ ├── redsea.biom │ └── redsea_metadata.txt └── run.sh ├── images ├── redsea-biplot.png ├── redsea-differentials-tabulated.png ├── redsea-tutorial-summarize-paired-output.png ├── redsea-tutorial-summarize-single-output.png ├── redsea-tutorial-tensorboard-hparams.png ├── redsea-tutorial-tensorboard-output.png └── tensorboard-output.png ├── scripts ├── songbird └── test_songbird_cli.py ├── setup.py └── songbird ├── __init__.py ├── citations.bib ├── multinomial.py ├── parameter_info.py ├── q2 ├── __init__.py ├── _method.py ├── _stats.py ├── _summary.py ├── _transformer.py ├── plugin_setup.py └── tests │ ├── test_method.py │ └── test_summary.py ├── tests ├── test_multinomial.py └── test_util.py └── util.py /.coveragerc: 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