├── .dir-locals.el ├── .gitignore ├── BIOS784-Fall2022-Gillings-v4.docx ├── BIOS784-Fall2024-Gillings-v7.docx ├── LICENSE ├── README.md ├── bioc ├── GRL.html ├── anno.html ├── objects.html ├── ranges.html └── strings.html ├── dist ├── batch.html ├── distances.html ├── sva.html └── transform_clust.html ├── eda ├── EDA.html ├── NAs.html └── brain_RNA.html ├── github.Rmd ├── github.html ├── hier ├── hierarchical.html └── jamesstein.html ├── index.Rmd ├── index.html ├── index_files ├── anchor-sections-1.0 │ ├── anchor-sections.css │ └── anchor-sections.js ├── bootstrap-3.3.5 │ ├── css │ │ ├── bootstrap-theme.css │ │ ├── bootstrap-theme.css.map │ │ ├── bootstrap-theme.min.css │ │ ├── bootstrap.css │ │ ├── bootstrap.css.map │ │ ├── bootstrap.min.css │ │ ├── cerulean.min.css │ │ ├── cosmo.min.css │ │ ├── darkly.min.css │ │ ├── flatly.min.css │ │ ├── fonts │ │ │ ├── Lato.ttf │ │ │ ├── LatoBold.ttf │ │ │ ├── LatoItalic.ttf │ │ │ ├── NewsCycle.ttf │ │ │ ├── NewsCycleBold.ttf │ │ │ ├── OpenSans.ttf │ │ │ ├── OpenSansBold.ttf │ │ │ ├── OpenSansBoldItalic.ttf │ │ │ ├── OpenSansItalic.ttf │ │ │ ├── OpenSansLight.ttf │ │ │ ├── OpenSansLightItalic.ttf │ │ │ ├── Raleway.ttf │ │ │ ├── RalewayBold.ttf │ │ │ ├── Roboto.ttf │ │ │ ├── RobotoBold.ttf │ │ │ ├── RobotoLight.ttf │ │ │ ├── RobotoMedium.ttf │ │ │ ├── SourceSansPro.ttf │ │ │ ├── SourceSansProBold.ttf │ │ │ ├── SourceSansProItalic.ttf │ │ │ ├── SourceSansProLight.ttf │ │ │ └── Ubuntu.ttf │ │ ├── journal.min.css │ │ ├── lumen.min.css │ │ ├── paper.min.css │ │ ├── readable.min.css │ │ ├── sandstone.min.css │ │ ├── simplex.min.css │ │ ├── spacelab.min.css │ │ ├── united.min.css │ │ └── yeti.min.css │ ├── fonts │ │ ├── glyphicons-halflings-regular.eot │ │ ├── glyphicons-halflings-regular.svg │ │ ├── glyphicons-halflings-regular.ttf │ │ ├── glyphicons-halflings-regular.woff │ │ └── glyphicons-halflings-regular.woff2 │ ├── js │ │ ├── bootstrap.js │ │ ├── bootstrap.min.js │ │ └── npm.js │ └── shim │ │ ├── html5shiv.min.js │ │ └── respond.min.js ├── header-attrs-2.14 │ └── header-attrs.js ├── header-attrs-2.25 │ └── header-attrs.js ├── header-attrs-2.27 │ └── header-attrs.js ├── header-attrs-2.7 │ └── header-attrs.js ├── highlightjs-1.1 │ ├── default.css │ ├── highlight.js │ └── textmate.css ├── highlightjs-9.12.0 │ ├── default.css │ ├── highlight.js │ └── textmate.css ├── jquery-1.11.3 │ └── jquery.min.js ├── jquery-3.6.0 │ ├── jquery-3.6.0.js │ ├── jquery-3.6.0.min.js │ └── jquery-3.6.0.min.map └── navigation-1.1 │ ├── codefolding-lua.css │ ├── codefolding.js │ ├── sourceembed.js │ └── tabsets.js ├── markov └── hmm.html ├── model ├── EM.html └── motif.html ├── multiple ├── IDR.html ├── localfdr.html └── multtest.html ├── net └── network.html ├── selfquiz ├── selfquiz.R └── selfquiz_answers.rda ├── tips.Rmd └── tips.html /.dir-locals.el: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/biodatascience/compbio/HEAD/.dir-locals.el 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