├── .gitignore ├── .travis.yml ├── CIRIquant ├── __init__.py ├── circ.py ├── coeff.py ├── de.py ├── logger.py ├── main.py ├── pipeline.py ├── prep_CIRIquant.py ├── replicate.py ├── utils.py └── version.py ├── INSTALL ├── LICENSE ├── MANIFEST.in ├── README.md ├── libs ├── CIRI2.pl ├── CIRI_DE.R └── __init__.py ├── misc ├── Makefile ├── deploy.sh └── deploy_test.sh ├── requirements.txt └── setup.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bioinfo-biols/CIRIquant/HEAD/.gitignore -------------------------------------------------------------------------------- /.travis.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bioinfo-biols/CIRIquant/HEAD/.travis.yml -------------------------------------------------------------------------------- /CIRIquant/__init__.py: 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