├── .gitignore ├── Dockerfile ├── LICENSE ├── MANIFEST.in ├── README.md ├── docs ├── VCF2Circos_favicon.png ├── circos.png ├── circos_help.png ├── dna_circos.png ├── docs.circos.png ├── refontcircos.html ├── refontcircos.pdf ├── refontcircos.png ├── vcf2circos.ico └── vcf2circos.png ├── pyproject.toml ├── setup.cfg ├── setup.py ├── tests ├── example.vcf ├── test_config.json ├── test_copy_number.vcf ├── test_empty.vcf ├── test_gene_matcher.vcf ├── test_main.py └── test_transloc.vcf └── vcf2circos ├── .DS_Store ├── Complex.py ├── __init__.py ├── __main__.py ├── __pycache__ ├── vcf2circos.cpython-36.pyc └── vcfreader.cpython-36.pyc ├── assets ├── .DS_Store ├── assets │ ├── .DS_Store │ ├── font-awesome.all.css │ ├── jquery-3.3.1.js │ ├── jquery-ui.css │ ├── jquery-ui.js │ ├── jquery.dataTables.min.css │ ├── jquery.dataTables.min.js │ ├── pcircos.css │ └── pcircos.js ├── font-awesome.all.css ├── jquery-3.3.1.js ├── jquery-ui.css ├── jquery-ui.js ├── jquery.dataTables.min.css ├── jquery.dataTables.min.js ├── pcircos.css └── pcircos.js ├── bcl_2.xml ├── colors.py ├── config ├── .DS_Store ├── __init__.py ├── coord_config.py ├── default_params.json └── json_config.py ├── dash ├── .DS_Store ├── dash │ ├── .DS_Store │ └── test.py └── test.py ├── dash_dict ├── dash_dict.py ├── dashapp.py ├── dashapp_functions.py ├── datafactory.py ├── experiment.py ├── fig.py ├── install.sh ├── maths.py ├── parseargs.py ├── plotcategories ├── __init__.py ├── cytoband.py ├── histogram.py ├── ideogram.py ├── link.py ├── plotconfig.py ├── ring.py └── scatter.py └── utils.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bioinfo-chru-strasbourg/vcf2circos/HEAD/.gitignore -------------------------------------------------------------------------------- /Dockerfile: -------------------------------------------------------------------------------- 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