├── LICENSE ├── README.rst ├── datasets.ipynb ├── datasets ├── Rfam-novel │ ├── dataset-preparation.R │ ├── train_test_val_41_Rfam_families.RDa │ └── train_test_val_sets_177_families.RDa └── nRC-public │ ├── dataset_nRC_test.fasta │ └── dataset_nRC_train.fasta ├── eden ├── test_labels_eden_0.txt ├── test_labels_eden_100.txt ├── test_labels_eden_120.txt ├── test_labels_eden_125.txt ├── test_labels_eden_150.txt ├── test_labels_eden_175.txt ├── test_labels_eden_200.txt ├── test_labels_eden_25.txt ├── test_labels_eden_50.txt ├── test_labels_eden_75.txt ├── test_pred_eden_0.txt ├── test_pred_eden_100.txt ├── test_pred_eden_125.txt ├── test_pred_eden_150.txt ├── test_pred_eden_175.txt ├── test_pred_eden_200.txt ├── test_pred_eden_25.txt ├── test_pred_eden_50.txt └── test_pred_eden_75.txt ├── experiment-Rfam-novel.ipynb ├── experiment-dataset-nRC-ImprovedModel.ipynb ├── experiment-dataset-nRC.ipynb ├── experiment-dropout-rejection.ipynb ├── figs ├── plot-cnnlayers.pdf ├── plot-padding.pdf ├── plot_bnoise-mACC_nl3_pNew.pdf ├── plot_rejection_H_2mer.pdf ├── plot_rejection_avrp_2mer.pdf └── plot_rejection_fp_2mer.pdf ├── figures-tables.ipynb ├── nrc ├── test_labels_nrc_0.txt ├── test_labels_nrc_100.txt ├── test_labels_nrc_125.txt ├── test_labels_nrc_150.txt ├── test_labels_nrc_175.txt ├── test_labels_nrc_200.txt ├── test_labels_nrc_25.txt ├── test_labels_nrc_50.txt ├── test_labels_nrc_75.txt ├── test_pred_nrc_0.txt ├── test_pred_nrc_100.txt ├── test_pred_nrc_125.txt ├── test_pred_nrc_150.txt ├── test_pred_nrc_175.txt ├── test_pred_nrc_200.txt ├── test_pred_nrc_25.txt ├── test_pred_nrc_50.txt └── test_pred_nrc_75.txt ├── results ├── RNAGCN_nRC_new.pckl ├── Rfam2Novel_new.pckl ├── Rfam2Novel_random.pckl ├── RfamNovel_constant.pckl ├── RfamNovel_new.pckl └── RfamNovel_random.pckl ├── tables └── prf-table_bn0_nl3_pNew.tex └── utils ├── ExpConfiguration.py ├── modelUtils.py └── seqEncoders.py /LICENSE: -------------------------------------------------------------------------------- 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