├── .Rbuildignore ├── .gitignore ├── DESCRIPTION ├── LICENSE ├── NAMESPACE ├── NEWS ├── R ├── CrossICC.R ├── Jaccard_cal.R ├── MergeMaid.R ├── balance.cluster.R ├── centroid2exp.R ├── cluster.centroid.R ├── com.feature.R ├── data.R ├── ebayes.R ├── m.f.s.R ├── predictor.R ├── runFAIME.R ├── ssGSEA.R └── utils.R ├── README.Rmd ├── README.md ├── data └── demo.platforms.rda ├── inst ├── imgs │ └── readMe_home.jpg └── shiny │ ├── data │ ├── KEGG.csv │ ├── SurvivalExample.csv │ └── TCGA.COAD.csv │ ├── dom │ ├── CrossICCObject.Rmd │ ├── Readmeshiny.md │ ├── correlation.Rmd │ ├── home_cancerR.md │ ├── predict.Rmd │ ├── ssGSEA.Rmd │ └── survival.Rmd │ ├── globalfunctions │ └── plotFunctions.R │ ├── server.R │ ├── ui.R │ └── www │ ├── css │ └── main.css │ └── images │ ├── cancerRelated.png │ ├── home_crossICC.png │ └── workflow.png ├── man ├── Cal.ARI.Rd ├── CrossICC.Rd ├── CrossICCInput.Rd ├── centroidOfcentroid.Rd ├── demo.platforms.Rd ├── get_jarrad_index_df_fromDF.Rd ├── 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