├── .cookiecutter.yaml ├── .editorconfig ├── .gitchangelog.rc ├── .github ├── CODEOWNERS ├── ISSUE_TEMPLATE │ ├── bug_report.md │ └── feature_request.md ├── PULL_REQUEST_TEMPLATE.md ├── dependabot.yml └── workflows │ ├── ci.yml │ └── docs.yml ├── .gitignore ├── .pre-commit-config.yaml ├── CODE_OF_CONDUCT.md ├── Justfile ├── LICENSE ├── MANIFEST.in ├── README.md ├── bioio ├── __init__.py ├── array_like_reader.py ├── bio_image.py ├── ome_utils.py ├── plugins.py ├── py.typed ├── tests │ ├── __init__.py │ ├── accepting-plugin │ │ ├── accepting_plugin │ │ │ ├── __init__.py │ │ │ ├── reader.py │ │ │ └── reader_metadata.py │ │ └── pyproject.toml │ ├── conftest.py │ ├── dummy-plugin │ │ ├── dummy_plugin │ │ │ ├── __init__.py │ │ │ ├── reader.py │ │ │ ├── reader_metadata.py │ │ │ └── writer.py │ │ └── pyproject.toml │ ├── test_array_like_reader.py │ ├── test_bio_image.py │ ├── test_plugins.py │ └── test_writer.py └── writers │ └── __init__.py ├── docs ├── CHANGELOG.rst ├── CODE_OF_CONDUCT.md ├── CONTRIBUTING.md ├── GOVERNANCE.md ├── MIGRATION.md ├── MISSION_AND_VALUES.md ├── OVERVIEW.md ├── api_reference.rst ├── conf.py ├── contributing.rst ├── developer_resources.rst ├── index.rst └── installation.rst └── pyproject.toml /.cookiecutter.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bioio-devs/bioio/HEAD/.cookiecutter.yaml -------------------------------------------------------------------------------- /.editorconfig: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bioio-devs/bioio/HEAD/.editorconfig -------------------------------------------------------------------------------- /.gitchangelog.rc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bioio-devs/bioio/HEAD/.gitchangelog.rc -------------------------------------------------------------------------------- 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