├── HIST2ST.py ├── HIST2ST_train.py ├── NB_module.py ├── README.md ├── Workflow.png ├── data ├── download.sh ├── her_hvg_cut_1000.npy └── skin_hvg_cut_1000.npy ├── dataset.py ├── gcn.py ├── graph_construction.py ├── predict.py ├── run_trained_models.ipynb ├── transformer.py ├── tutorial.ipynb └── utils.py /HIST2ST.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/biomed-AI/Hist2ST/HEAD/HIST2ST.py -------------------------------------------------------------------------------- /HIST2ST_train.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/biomed-AI/Hist2ST/HEAD/HIST2ST_train.py -------------------------------------------------------------------------------- /NB_module.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/biomed-AI/Hist2ST/HEAD/NB_module.py -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/biomed-AI/Hist2ST/HEAD/README.md -------------------------------------------------------------------------------- /Workflow.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/biomed-AI/Hist2ST/HEAD/Workflow.png -------------------------------------------------------------------------------- /data/download.sh: -------------------------------------------------------------------------------- 1 | git clone https://github.com/almaan/her2st.git -------------------------------------------------------------------------------- /data/her_hvg_cut_1000.npy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/biomed-AI/Hist2ST/HEAD/data/her_hvg_cut_1000.npy -------------------------------------------------------------------------------- /data/skin_hvg_cut_1000.npy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/biomed-AI/Hist2ST/HEAD/data/skin_hvg_cut_1000.npy -------------------------------------------------------------------------------- /dataset.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/biomed-AI/Hist2ST/HEAD/dataset.py -------------------------------------------------------------------------------- /gcn.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/biomed-AI/Hist2ST/HEAD/gcn.py -------------------------------------------------------------------------------- /graph_construction.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/biomed-AI/Hist2ST/HEAD/graph_construction.py -------------------------------------------------------------------------------- /predict.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/biomed-AI/Hist2ST/HEAD/predict.py -------------------------------------------------------------------------------- /run_trained_models.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/biomed-AI/Hist2ST/HEAD/run_trained_models.ipynb -------------------------------------------------------------------------------- /transformer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/biomed-AI/Hist2ST/HEAD/transformer.py -------------------------------------------------------------------------------- /tutorial.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/biomed-AI/Hist2ST/HEAD/tutorial.ipynb -------------------------------------------------------------------------------- /utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/biomed-AI/Hist2ST/HEAD/utils.py --------------------------------------------------------------------------------