├── Ch01 Introduction to R.R ├── Ch02 Creating a dataset.R ├── Ch03 Getting started with graphs.R ├── Ch04 Basic data management.R ├── Ch05 Advanced data management.R ├── Ch06 Basic Graphs.R ├── Ch07 Basic statistics.R ├── Ch08 Regression.R ├── Ch09 Analysis of Variance.R ├── Ch10 Power analysis.R ├── Ch11 Intermediate graphs.R ├── Ch12 Resampling statistics and bootstrapping.R ├── Ch13 Generalized linear models.R ├── Ch14 Principal components and factor analysis.R ├── Ch15 Time series.R ├── Ch16 Cluster analysis.R ├── Ch17 Classification.R ├── Ch18 Advanced methods for missing data.R ├── Ch19 Advanced graphics with ggplot2.R ├── Ch20 Advanced R programming.R ├── Ch21 Creating a package.R ├── Ch21 nparFiles ├── DESCRIPTION ├── R │ ├── life.R │ ├── npar.R │ ├── oneway.R │ ├── plot.R │ ├── print.R │ └── summary.R └── data │ └── life.rda ├── Ch22 Creating dynamic Reports.R ├── Ch22 DynamicReports ├── drugs.Rnw ├── salaryTemplate.odt ├── salaryTemplate2.docx └── women.Rmd ├── Ch23 Bonus - Advanced graphics with the lattice package.R ├── README.md ├── R_in_Action_2nd_Edition-Errata.pdf └── lmPerm ├── lmPerm_1.1-2.tar.gz └── lmPerm_1.1-2.zip /Ch01 Introduction to R.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/biotrainee/RiA2/HEAD/Ch01 Introduction to R.R -------------------------------------------------------------------------------- /Ch02 Creating a dataset.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/biotrainee/RiA2/HEAD/Ch02 Creating a dataset.R -------------------------------------------------------------------------------- /Ch03 Getting started with graphs.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/biotrainee/RiA2/HEAD/Ch03 Getting started with graphs.R -------------------------------------------------------------------------------- /Ch04 Basic data management.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/biotrainee/RiA2/HEAD/Ch04 Basic data management.R -------------------------------------------------------------------------------- /Ch05 Advanced data management.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/biotrainee/RiA2/HEAD/Ch05 Advanced data management.R -------------------------------------------------------------------------------- /Ch06 Basic Graphs.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/biotrainee/RiA2/HEAD/Ch06 Basic Graphs.R -------------------------------------------------------------------------------- /Ch07 Basic statistics.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/biotrainee/RiA2/HEAD/Ch07 Basic statistics.R 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https://raw.githubusercontent.com/biotrainee/RiA2/HEAD/Ch11 Intermediate graphs.R -------------------------------------------------------------------------------- /Ch12 Resampling statistics and bootstrapping.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/biotrainee/RiA2/HEAD/Ch12 Resampling statistics and bootstrapping.R -------------------------------------------------------------------------------- /Ch13 Generalized linear models.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/biotrainee/RiA2/HEAD/Ch13 Generalized linear models.R -------------------------------------------------------------------------------- /Ch14 Principal components and factor analysis.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/biotrainee/RiA2/HEAD/Ch14 Principal components and factor analysis.R 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nparFiles/data/life.rda: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/biotrainee/RiA2/HEAD/Ch21 nparFiles/data/life.rda -------------------------------------------------------------------------------- /Ch22 Creating dynamic Reports.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/biotrainee/RiA2/HEAD/Ch22 Creating dynamic Reports.R -------------------------------------------------------------------------------- /Ch22 DynamicReports/drugs.Rnw: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/biotrainee/RiA2/HEAD/Ch22 DynamicReports/drugs.Rnw -------------------------------------------------------------------------------- /Ch22 DynamicReports/salaryTemplate.odt: -------------------------------------------------------------------------------- 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