├── .gitignore ├── LICENSE.txt ├── README.md ├── ann-solo.png ├── notebooks ├── README.md ├── ann_index.ipynb ├── hek293_stats.ipynb ├── iprg2012_ann_hyperparameters.ipynb ├── iprg2012_cascade.ipynb ├── iprg2012_consensus.ipynb ├── iprg2012_fdr.ipynb ├── iprg2012_num_candidates.ipynb ├── iprg2012_profiling.ipynb ├── iprg2012_spectrum_hashing.ipynb ├── iprg2012_spectrum_representation.ipynb ├── kim2014_stats.ipynb └── spec_lib_size.ipynb └── src ├── MANIFEST.in ├── README.md ├── ann_solo ├── __init__.py ├── ann_solo.py ├── config.py ├── decoy_generator.py ├── ms_io │ └── parsers.cpp ├── parsers.cpp ├── parsers.pyx ├── plot_ssm.py ├── prosit.py ├── reader.py ├── rndm.py ├── spectral_library.py ├── spectrum.py ├── spectrum_match.py ├── spectrum_similarity.py ├── utils.py └── writer.py ├── setup.py └── tests ├── __init__.py ├── decoy_generator_test.py ├── prosit_test.py ├── query_reader_test.py ├── spectrum_similarity_test.py └── utils_test.py /.gitignore: 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