├── .github └── workflows │ └── keep_a_changelog.yml ├── .gitignore ├── CHANGELOG.md ├── LICENSE ├── README.md ├── data ├── README.md └── test.vcf.gz ├── requirements.txt ├── setup.py ├── tests ├── conftest.py ├── fixtures │ ├── test.fam │ └── test.vcf.gz ├── test_cli.py ├── test_utils.py └── test_vcf_tools.py └── upd ├── __init__.py ├── __main__.py ├── __version__.py ├── bed_utils.py ├── cli.py ├── utils.py └── vcf_tools.py /.github/workflows/keep_a_changelog.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjhall/upd/HEAD/.github/workflows/keep_a_changelog.yml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjhall/upd/HEAD/.gitignore -------------------------------------------------------------------------------- /CHANGELOG.md: 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