├── .ci ├── get_sundials.sh ├── run_ci.sh └── test_py2.sh ├── .circleci └── config.yml ├── .gitignore ├── .gitmodules ├── .jupyter └── jupyter_notebook_config.py ├── .woodpecker.yaml ├── AUTHORS ├── CHANGES.rst ├── CONTRIBUTING.rst ├── LICENSE ├── MANIFEST.in ├── README.rst ├── benchmarks ├── asv.conf.json └── benchmarks │ ├── __init__.py │ └── pydy_double_pendulum.py ├── conda-recipe ├── meta.yaml └── run_test.sh ├── environment.yml ├── examples ├── .interactive-plotting.ipynb ├── _bench_native_odesys_multi.ipynb ├── _by_name_convert_to_autonomous.ipynb ├── _chem_kinet.py ├── _const_step_size.ipynb ├── _convert_to_autonomous_eyring_sinusoidal.ipynb ├── _extend_by_integration.ipynb ├── _linear_invariants_as_autonomous.ipynb ├── _lower_bounds.ipynb ├── _native_override_chemical_kinetics.ipynb ├── _native_param_cse.ipynb ├── _native_standalone.ipynb ├── _nonlinear_3body_system.ipynb ├── _params_by_name.ipynb ├── _radiolysis.ipynb ├── _robertson.ipynb ├── _sparse_matrix.ipynb ├── _spring_error_convergence.ipynb ├── _spring_nonlinear_invariants.ipynb ├── _transform_and_invariants.ipynb ├── chem_kinet_input1.txt ├── harmonic.png ├── lnx.png ├── lorenz.ipynb ├── pydy_double_pendulum.py ├── standalone_input1.txt ├── standalone_input2.txt ├── tests │ └── test_examples.py ├── transformations.ipynb ├── van_der_pol.png ├── van_der_pol.py ├── van_der_pol_formulations.ipynb └── van_der_pol_interpolation.ipynb ├── index.ipynb ├── joss-paper ├── codemeta.json ├── paper.bib └── paper.md ├── postBuild ├── pyodesys ├── __init__.py ├── _release.py ├── analysis.py ├── convergence.py ├── core.py ├── integrators.py ├── native │ ├── __init__.py │ ├── _base.py │ ├── cvode.py │ ├── gsl.py │ ├── odeint.py │ ├── sources │ │ ├── _cvode_wrapper.pyx │ │ ├── _gsl_wrapper.pyx │ │ ├── _odeint_wrapper.pyx │ │ ├── anyode │ │ ├── anyode.pxd │ │ ├── odesys_anyode.hpp │ │ ├── odesys_anyode.pxd │ │ ├── odesys_anyode_iterative.hpp │ │ ├── odesys_anyode_iterative.pxd │ │ ├── odesys_anyode_template.cpp │ │ ├── odesys_util.hpp │ │ ├── odesys_util.pxd │ │ └── standalone_template.cpp │ ├── tests │ │ ├── __init__.py │ │ ├── _test_robertson_native.py │ │ ├── _tests.py │ │ ├── test_cvode.py │ │ ├── test_gsl.py │ │ └── test_odeint.py │ └── util.py ├── plotting.py ├── results.py ├── symbolic.py ├── tests │ ├── __init__.py │ ├── _cetsa.py │ ├── _robertson.py │ ├── bateman.py │ ├── decay3-formatulations.ipynb │ ├── rober.ipynb │ ├── test_core.py │ ├── test_plotting.py │ ├── test_results.py │ ├── test_robertson.py │ ├── test_symbolic.py │ ├── test_symbolic__test_PartiallySolvedSystem__roots.ipynb │ └── test_util.py └── util.py ├── scripts ├── build_conda_recipe.sh ├── check_clean_repo_on_master.sh ├── coverage_badge.py ├── environment │ └── Dockerfile ├── generate_docs.sh ├── grep-for-binary-data.sh ├── grep-for-merge-blocking-token.sh ├── host-jupyter-using-docker.sh ├── post_release.sh ├── prepare_deploy.sh ├── rasterize.js ├── release.sh ├── render_index.sh ├── render_notebooks.sh ├── run_tests.sh └── update-gh-pages.sh ├── setup.cfg └── setup.py /.ci/get_sundials.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/.ci/get_sundials.sh -------------------------------------------------------------------------------- /.ci/run_ci.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/.ci/run_ci.sh -------------------------------------------------------------------------------- /.ci/test_py2.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/.ci/test_py2.sh -------------------------------------------------------------------------------- /.circleci/config.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/.circleci/config.yml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/.gitignore -------------------------------------------------------------------------------- /.gitmodules: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/.gitmodules -------------------------------------------------------------------------------- /.jupyter/jupyter_notebook_config.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/.jupyter/jupyter_notebook_config.py -------------------------------------------------------------------------------- /.woodpecker.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/.woodpecker.yaml -------------------------------------------------------------------------------- /AUTHORS: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/AUTHORS -------------------------------------------------------------------------------- /CHANGES.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/CHANGES.rst -------------------------------------------------------------------------------- /CONTRIBUTING.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/CONTRIBUTING.rst -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/LICENSE -------------------------------------------------------------------------------- /MANIFEST.in: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/MANIFEST.in -------------------------------------------------------------------------------- /README.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/README.rst -------------------------------------------------------------------------------- /benchmarks/asv.conf.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/benchmarks/asv.conf.json -------------------------------------------------------------------------------- /benchmarks/benchmarks/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /benchmarks/benchmarks/pydy_double_pendulum.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/benchmarks/benchmarks/pydy_double_pendulum.py -------------------------------------------------------------------------------- /conda-recipe/meta.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/conda-recipe/meta.yaml -------------------------------------------------------------------------------- /conda-recipe/run_test.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/conda-recipe/run_test.sh -------------------------------------------------------------------------------- /environment.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/environment.yml -------------------------------------------------------------------------------- /examples/.interactive-plotting.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/examples/.interactive-plotting.ipynb -------------------------------------------------------------------------------- /examples/_bench_native_odesys_multi.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/examples/_bench_native_odesys_multi.ipynb -------------------------------------------------------------------------------- /examples/_by_name_convert_to_autonomous.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/examples/_by_name_convert_to_autonomous.ipynb -------------------------------------------------------------------------------- /examples/_chem_kinet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/examples/_chem_kinet.py -------------------------------------------------------------------------------- /examples/_const_step_size.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/examples/_const_step_size.ipynb -------------------------------------------------------------------------------- /examples/_convert_to_autonomous_eyring_sinusoidal.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/examples/_convert_to_autonomous_eyring_sinusoidal.ipynb -------------------------------------------------------------------------------- /examples/_extend_by_integration.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/examples/_extend_by_integration.ipynb -------------------------------------------------------------------------------- /examples/_linear_invariants_as_autonomous.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/examples/_linear_invariants_as_autonomous.ipynb -------------------------------------------------------------------------------- /examples/_lower_bounds.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/examples/_lower_bounds.ipynb -------------------------------------------------------------------------------- /examples/_native_override_chemical_kinetics.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/examples/_native_override_chemical_kinetics.ipynb -------------------------------------------------------------------------------- /examples/_native_param_cse.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/examples/_native_param_cse.ipynb -------------------------------------------------------------------------------- /examples/_native_standalone.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/examples/_native_standalone.ipynb -------------------------------------------------------------------------------- /examples/_nonlinear_3body_system.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/examples/_nonlinear_3body_system.ipynb -------------------------------------------------------------------------------- /examples/_params_by_name.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/examples/_params_by_name.ipynb -------------------------------------------------------------------------------- /examples/_radiolysis.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/examples/_radiolysis.ipynb -------------------------------------------------------------------------------- /examples/_robertson.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/examples/_robertson.ipynb -------------------------------------------------------------------------------- /examples/_sparse_matrix.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/examples/_sparse_matrix.ipynb -------------------------------------------------------------------------------- /examples/_spring_error_convergence.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/examples/_spring_error_convergence.ipynb -------------------------------------------------------------------------------- /examples/_spring_nonlinear_invariants.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/examples/_spring_nonlinear_invariants.ipynb -------------------------------------------------------------------------------- /examples/_transform_and_invariants.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/examples/_transform_and_invariants.ipynb -------------------------------------------------------------------------------- /examples/chem_kinet_input1.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/examples/chem_kinet_input1.txt -------------------------------------------------------------------------------- /examples/harmonic.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/examples/harmonic.png -------------------------------------------------------------------------------- /examples/lnx.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/examples/lnx.png -------------------------------------------------------------------------------- /examples/lorenz.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/examples/lorenz.ipynb -------------------------------------------------------------------------------- /examples/pydy_double_pendulum.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/examples/pydy_double_pendulum.py -------------------------------------------------------------------------------- /examples/standalone_input1.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/examples/standalone_input1.txt -------------------------------------------------------------------------------- /examples/standalone_input2.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/examples/standalone_input2.txt -------------------------------------------------------------------------------- /examples/tests/test_examples.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/examples/tests/test_examples.py -------------------------------------------------------------------------------- /examples/transformations.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/examples/transformations.ipynb -------------------------------------------------------------------------------- /examples/van_der_pol.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/examples/van_der_pol.png -------------------------------------------------------------------------------- /examples/van_der_pol.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/examples/van_der_pol.py -------------------------------------------------------------------------------- /examples/van_der_pol_formulations.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/examples/van_der_pol_formulations.ipynb -------------------------------------------------------------------------------- /examples/van_der_pol_interpolation.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/examples/van_der_pol_interpolation.ipynb -------------------------------------------------------------------------------- /index.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/index.ipynb -------------------------------------------------------------------------------- /joss-paper/codemeta.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/joss-paper/codemeta.json -------------------------------------------------------------------------------- /joss-paper/paper.bib: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/joss-paper/paper.bib -------------------------------------------------------------------------------- /joss-paper/paper.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/joss-paper/paper.md -------------------------------------------------------------------------------- /postBuild: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/postBuild -------------------------------------------------------------------------------- /pyodesys/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/pyodesys/__init__.py -------------------------------------------------------------------------------- /pyodesys/_release.py: -------------------------------------------------------------------------------- 1 | __version__ = '0.14.0.dev0+git' 2 | -------------------------------------------------------------------------------- /pyodesys/analysis.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /pyodesys/convergence.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/pyodesys/convergence.py -------------------------------------------------------------------------------- /pyodesys/core.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/pyodesys/core.py -------------------------------------------------------------------------------- /pyodesys/integrators.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/pyodesys/integrators.py -------------------------------------------------------------------------------- /pyodesys/native/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/pyodesys/native/__init__.py -------------------------------------------------------------------------------- /pyodesys/native/_base.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/pyodesys/native/_base.py -------------------------------------------------------------------------------- /pyodesys/native/cvode.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/pyodesys/native/cvode.py -------------------------------------------------------------------------------- /pyodesys/native/gsl.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/pyodesys/native/gsl.py -------------------------------------------------------------------------------- /pyodesys/native/odeint.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/pyodesys/native/odeint.py -------------------------------------------------------------------------------- /pyodesys/native/sources/_cvode_wrapper.pyx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/pyodesys/native/sources/_cvode_wrapper.pyx -------------------------------------------------------------------------------- /pyodesys/native/sources/_gsl_wrapper.pyx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/pyodesys/native/sources/_gsl_wrapper.pyx -------------------------------------------------------------------------------- /pyodesys/native/sources/_odeint_wrapper.pyx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/pyodesys/native/sources/_odeint_wrapper.pyx -------------------------------------------------------------------------------- /pyodesys/native/sources/anyode: -------------------------------------------------------------------------------- 1 | ../../../external/anyode/include/anyode -------------------------------------------------------------------------------- /pyodesys/native/sources/anyode.pxd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/pyodesys/native/sources/anyode.pxd -------------------------------------------------------------------------------- /pyodesys/native/sources/odesys_anyode.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/pyodesys/native/sources/odesys_anyode.hpp -------------------------------------------------------------------------------- /pyodesys/native/sources/odesys_anyode.pxd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/pyodesys/native/sources/odesys_anyode.pxd -------------------------------------------------------------------------------- /pyodesys/native/sources/odesys_anyode_iterative.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/pyodesys/native/sources/odesys_anyode_iterative.hpp -------------------------------------------------------------------------------- /pyodesys/native/sources/odesys_anyode_iterative.pxd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/pyodesys/native/sources/odesys_anyode_iterative.pxd -------------------------------------------------------------------------------- /pyodesys/native/sources/odesys_anyode_template.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/pyodesys/native/sources/odesys_anyode_template.cpp -------------------------------------------------------------------------------- /pyodesys/native/sources/odesys_util.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/pyodesys/native/sources/odesys_util.hpp -------------------------------------------------------------------------------- /pyodesys/native/sources/odesys_util.pxd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/pyodesys/native/sources/odesys_util.pxd -------------------------------------------------------------------------------- /pyodesys/native/sources/standalone_template.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/pyodesys/native/sources/standalone_template.cpp -------------------------------------------------------------------------------- /pyodesys/native/tests/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /pyodesys/native/tests/_test_robertson_native.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/pyodesys/native/tests/_test_robertson_native.py -------------------------------------------------------------------------------- /pyodesys/native/tests/_tests.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/pyodesys/native/tests/_tests.py -------------------------------------------------------------------------------- /pyodesys/native/tests/test_cvode.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/pyodesys/native/tests/test_cvode.py -------------------------------------------------------------------------------- /pyodesys/native/tests/test_gsl.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/pyodesys/native/tests/test_gsl.py -------------------------------------------------------------------------------- /pyodesys/native/tests/test_odeint.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/pyodesys/native/tests/test_odeint.py -------------------------------------------------------------------------------- /pyodesys/native/util.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/pyodesys/native/util.py -------------------------------------------------------------------------------- /pyodesys/plotting.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/pyodesys/plotting.py -------------------------------------------------------------------------------- /pyodesys/results.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/pyodesys/results.py -------------------------------------------------------------------------------- /pyodesys/symbolic.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/pyodesys/symbolic.py -------------------------------------------------------------------------------- /pyodesys/tests/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /pyodesys/tests/_cetsa.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/pyodesys/tests/_cetsa.py -------------------------------------------------------------------------------- /pyodesys/tests/_robertson.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/pyodesys/tests/_robertson.py -------------------------------------------------------------------------------- /pyodesys/tests/bateman.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/pyodesys/tests/bateman.py -------------------------------------------------------------------------------- /pyodesys/tests/decay3-formatulations.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/pyodesys/tests/decay3-formatulations.ipynb -------------------------------------------------------------------------------- /pyodesys/tests/rober.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/pyodesys/tests/rober.ipynb -------------------------------------------------------------------------------- /pyodesys/tests/test_core.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/pyodesys/tests/test_core.py -------------------------------------------------------------------------------- /pyodesys/tests/test_plotting.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/pyodesys/tests/test_plotting.py -------------------------------------------------------------------------------- /pyodesys/tests/test_results.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/pyodesys/tests/test_results.py -------------------------------------------------------------------------------- /pyodesys/tests/test_robertson.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/pyodesys/tests/test_robertson.py -------------------------------------------------------------------------------- /pyodesys/tests/test_symbolic.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/pyodesys/tests/test_symbolic.py -------------------------------------------------------------------------------- /pyodesys/tests/test_symbolic__test_PartiallySolvedSystem__roots.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/pyodesys/tests/test_symbolic__test_PartiallySolvedSystem__roots.ipynb -------------------------------------------------------------------------------- /pyodesys/tests/test_util.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/pyodesys/tests/test_util.py -------------------------------------------------------------------------------- /pyodesys/util.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/pyodesys/util.py -------------------------------------------------------------------------------- /scripts/build_conda_recipe.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/scripts/build_conda_recipe.sh -------------------------------------------------------------------------------- /scripts/check_clean_repo_on_master.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/scripts/check_clean_repo_on_master.sh -------------------------------------------------------------------------------- /scripts/coverage_badge.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/scripts/coverage_badge.py -------------------------------------------------------------------------------- /scripts/environment/Dockerfile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/scripts/environment/Dockerfile -------------------------------------------------------------------------------- /scripts/generate_docs.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/scripts/generate_docs.sh -------------------------------------------------------------------------------- /scripts/grep-for-binary-data.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/scripts/grep-for-binary-data.sh -------------------------------------------------------------------------------- /scripts/grep-for-merge-blocking-token.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/scripts/grep-for-merge-blocking-token.sh -------------------------------------------------------------------------------- /scripts/host-jupyter-using-docker.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/scripts/host-jupyter-using-docker.sh -------------------------------------------------------------------------------- /scripts/post_release.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/scripts/post_release.sh -------------------------------------------------------------------------------- /scripts/prepare_deploy.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/scripts/prepare_deploy.sh -------------------------------------------------------------------------------- /scripts/rasterize.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/scripts/rasterize.js -------------------------------------------------------------------------------- /scripts/release.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/scripts/release.sh -------------------------------------------------------------------------------- /scripts/render_index.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/scripts/render_index.sh -------------------------------------------------------------------------------- /scripts/render_notebooks.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/scripts/render_notebooks.sh -------------------------------------------------------------------------------- /scripts/run_tests.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/scripts/run_tests.sh -------------------------------------------------------------------------------- /scripts/update-gh-pages.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/scripts/update-gh-pages.sh -------------------------------------------------------------------------------- /setup.cfg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/setup.cfg -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bjodah/pyodesys/HEAD/setup.py --------------------------------------------------------------------------------