├── README.md ├── base_unet ├── lesion_segmentation │ ├── data_util.py │ ├── generate_mask.py │ ├── main.py │ └── model.py └── liver_segmentation │ ├── data_util.py │ ├── main.py │ ├── model.py │ └── run.sh └── data_preprocessing ├── nii2png.py ├── png2nii.py └── resample_nii.py /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/blackbean001/Liver-Tumor-Segmentation/HEAD/README.md -------------------------------------------------------------------------------- /base_unet/lesion_segmentation/data_util.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/blackbean001/Liver-Tumor-Segmentation/HEAD/base_unet/lesion_segmentation/data_util.py -------------------------------------------------------------------------------- /base_unet/lesion_segmentation/generate_mask.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/blackbean001/Liver-Tumor-Segmentation/HEAD/base_unet/lesion_segmentation/generate_mask.py -------------------------------------------------------------------------------- /base_unet/lesion_segmentation/main.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/blackbean001/Liver-Tumor-Segmentation/HEAD/base_unet/lesion_segmentation/main.py -------------------------------------------------------------------------------- /base_unet/lesion_segmentation/model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/blackbean001/Liver-Tumor-Segmentation/HEAD/base_unet/lesion_segmentation/model.py -------------------------------------------------------------------------------- /base_unet/liver_segmentation/data_util.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/blackbean001/Liver-Tumor-Segmentation/HEAD/base_unet/liver_segmentation/data_util.py -------------------------------------------------------------------------------- /base_unet/liver_segmentation/main.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/blackbean001/Liver-Tumor-Segmentation/HEAD/base_unet/liver_segmentation/main.py -------------------------------------------------------------------------------- /base_unet/liver_segmentation/model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/blackbean001/Liver-Tumor-Segmentation/HEAD/base_unet/liver_segmentation/model.py -------------------------------------------------------------------------------- /base_unet/liver_segmentation/run.sh: -------------------------------------------------------------------------------- 1 | CUDA_VISIBLE_DEVICES=7 python main.py 2 | -------------------------------------------------------------------------------- /data_preprocessing/nii2png.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/blackbean001/Liver-Tumor-Segmentation/HEAD/data_preprocessing/nii2png.py -------------------------------------------------------------------------------- /data_preprocessing/png2nii.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/blackbean001/Liver-Tumor-Segmentation/HEAD/data_preprocessing/png2nii.py -------------------------------------------------------------------------------- /data_preprocessing/resample_nii.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/blackbean001/Liver-Tumor-Segmentation/HEAD/data_preprocessing/resample_nii.py --------------------------------------------------------------------------------