├── .Rbuildignore ├── .github └── workflows │ ├── R-CMD-check.yaml │ ├── deploy_docs.yaml │ └── test-coverage.yaml ├── .gitignore ├── CONDUCT.md ├── DESCRIPTION ├── LICENSE ├── NAMESPACE ├── NEWS.md ├── R ├── contract_phenocam.r ├── daylength.r ├── detect_outliers.r ├── download_phenocam.r ├── expand_phenocam.r ├── grvi.r ├── list_rois.r ├── list_sites.r ├── merge_daymet.r ├── merge_modis.R ├── normalize_ts.r ├── optimal_span.r ├── phenocam_explorer.r ├── phenophases.r ├── process_phenocam.r ├── read_phenocam.r ├── smooth_ts.r ├── transition_dates.r ├── truncate_phenocam.r ├── write_phenocam.r └── zzz.R ├── README.md ├── cran-comments.md ├── docs ├── 404.html ├── CONDUCT.html ├── LICENSE-text.html ├── apple-touch-icon-120x120.png ├── apple-touch-icon-152x152.png ├── apple-touch-icon-180x180.png ├── apple-touch-icon-60x60.png ├── apple-touch-icon-76x76.png ├── apple-touch-icon.png ├── articles │ ├── index.html │ ├── phenocamr-vignette.html │ └── phenocamr-vignette_files │ │ ├── figure-html │ │ └── unnamed-chunk-10-1.png │ │ └── header-attrs-2.11 │ │ └── header-attrs.js ├── authors.html ├── bglabs.css ├── bootstrap-toc.css ├── bootstrap-toc.js ├── docsearch.css ├── docsearch.js ├── favicon-16x16.png ├── favicon-32x32.png ├── favicon.ico ├── index.html ├── link.svg ├── logo.png ├── news │ └── index.html ├── pkgdown.css ├── pkgdown.js ├── pkgdown.yml ├── reference │ ├── Rplot001.png │ ├── contract_phenocam.html │ ├── daylength.html │ ├── detect_outliers.html │ ├── download_phenocam.html │ ├── expand_phenocam.html │ ├── figures │ │ └── logo.png │ ├── grvi.html │ ├── index.html │ ├── list_rois.html │ ├── list_sites.html │ ├── merge_daymet.html │ ├── merge_modis.html │ ├── normalize_ts.html │ ├── optimal_span-1.png │ ├── optimal_span.html │ ├── phenocam_explorer.html │ ├── phenophases.html │ ├── process_phenocam.html │ ├── read_phenocam.html │ ├── smooth_ts.html │ ├── transition_dates.html │ ├── truncate_phenocam.html │ └── write_phenocam.html └── sitemap.xml ├── inst ├── CITATION └── shiny │ └── phenocam_explorer │ ├── agriculture_o.png │ ├── broadleaf_o.png │ ├── citation.R │ ├── conifer_o.png │ ├── grass_o.png │ ├── server.R │ ├── styles.css │ ├── tropical_o.png │ ├── ui.R │ └── wetland_o.png ├── logo.png ├── man ├── contract_phenocam.Rd ├── daylength.Rd ├── detect_outliers.Rd ├── download_phenocam.Rd ├── expand_phenocam.Rd ├── figures │ └── logo.png ├── grvi.Rd ├── list_rois.Rd ├── list_sites.Rd ├── merge_daymet.Rd ├── merge_modis.Rd ├── normalize_ts.Rd ├── optimal_span.Rd ├── phenocam_explorer.Rd ├── phenophases.Rd ├── process_phenocam.Rd ├── read_phenocam.Rd ├── smooth_ts.Rd ├── transition_dates.Rd ├── truncate_phenocam.Rd └── write_phenocam.Rd ├── phenocamr-logo.ai ├── phenocamr.Rproj ├── pkgdown ├── _pkgdown.yml └── favicon │ ├── apple-touch-icon-120x120.png │ ├── apple-touch-icon-152x152.png │ ├── apple-touch-icon-180x180.png │ ├── apple-touch-icon-60x60.png │ ├── apple-touch-icon-76x76.png │ ├── apple-touch-icon.png │ ├── 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