├── .gitignore ├── LICENSE ├── README.md ├── demos ├── manuscript_analysis │ ├── 10x_pbmc_demo.ipynb │ ├── lymph_node_demo.ipynb │ ├── paired_cellline_demo.ipynb │ ├── sciCAR_cellline_demo.ipynb │ ├── share_skin_demo.ipynb │ ├── snare_cellline_demo.ipynb │ ├── snare_p0_demo.ipynb │ └── snare_p0_no_pretrain.ipynb └── scMVP_tutorial.ipynb ├── scMVP ├── __init__.py ├── _settings.py ├── dataset │ ├── __init__.py │ ├── dataset.py │ └── scMVP_dataloader.py ├── inference │ ├── __init__.py │ ├── annotation.py │ ├── autotune.py │ ├── inference.py │ ├── multi_inference.py │ ├── posterior.py │ └── trainer.py └── models │ ├── __init__.py │ ├── classifier.py │ ├── log_likelihood.py │ ├── modules.py │ ├── multi_vae_attention.py │ ├── utils.py │ ├── vaePeak_selfattetion.py │ └── vae_attention.py └── setup.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bm2-lab/scMVP/HEAD/.gitignore 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