├── .gitignore ├── LICENSE ├── README.md ├── _utils.py ├── checkpoints ├── gop-120 │ ├── scan0_w500-d1_bslr0.pth │ ├── scan1_w500-d1_bslr0.pth │ ├── scan2_w500-d1_bslr0.pth │ ├── scan3_w500-d1_bslr0.pth │ ├── scan4_w500-d1_bslr0.pth │ ├── scan5_w500-d1_bslr0.pth │ ├── scan6_w500-d1_bslr0.pth │ └── scan7_w500-d1_bslr0.pth ├── gop-60 │ ├── scan0_w500-d1_bslr0.pth │ ├── scan1_w500-d1_bslr0.pth │ ├── scan2_w500-d1_bslr0.pth │ ├── scan3_w500-d1_bslr0.pth │ ├── scan4_w500-d1_bslr0.pth │ ├── scan5_w500-d1_bslr0.pth │ ├── scan6_w500-d1_bslr0.pth │ └── scan7_w500-d1_bslr0.pth ├── mlp-120 │ ├── scan0_w200-d4_bslr0.pth │ ├── scan0_w200-d4_bslr1.pth │ ├── scan1_w200-d4_bslr0.pth │ ├── scan1_w200-d4_bslr1.pth │ ├── scan2_w200-d4_bslr0.pth │ ├── scan2_w200-d4_bslr1.pth │ ├── scan3_w200-d4_bslr0.pth │ ├── scan3_w200-d4_bslr1.pth │ ├── scan4_w200-d4_bslr0.pth │ ├── scan4_w200-d4_bslr1.pth │ ├── scan5_w200-d4_bslr0.pth │ ├── scan5_w200-d4_bslr1.pth │ ├── scan6_w200-d4_bslr0.pth │ ├── scan6_w200-d4_bslr1.pth │ ├── scan7_w200-d4_bslr0.pth │ └── scan7_w200-d4_bslr1.pth └── mlp-60 │ ├── scan0_w200-d4_bslr0.pth │ ├── scan0_w200-d4_bslr1.pth │ ├── scan1_w200-d4_bslr0.pth │ ├── scan1_w200-d4_bslr1.pth │ ├── scan2_w200-d4_bslr0.pth │ ├── scan2_w200-d4_bslr1.pth │ ├── scan3_w200-d4_bslr0.pth │ ├── scan3_w200-d4_bslr1.pth │ ├── scan4_w200-d4_bslr0.pth │ ├── scan4_w200-d4_bslr1.pth │ ├── scan5_w200-d4_bslr0.pth │ ├── scan5_w200-d4_bslr1.pth │ ├── scan6_w200-d4_bslr0.pth │ ├── scan6_w200-d4_bslr1.pth │ ├── scan7_w200-d4_bslr0.pth │ └── scan7_w200-d4_bslr1.pth ├── conf ├── config.yaml ├── data │ ├── aapm_2d.yaml │ └── shepp_2d.yaml ├── job.yaml ├── model │ ├── grid_of_pixels.yaml │ └── mlp.yaml ├── opt │ ├── adam.yaml │ ├── adamw.yaml │ └── sgd.yaml ├── reg │ └── tv.yaml └── uncertainty │ ├── ensemble.yaml │ ├── hmc.yaml │ └── mc_dropout.yaml ├── data ├── AAPM_test_set │ ├── CT_img_0.npy │ ├── CT_img_1.npy │ ├── CT_img_2.npy │ ├── CT_img_3.npy │ ├── CT_img_4.npy │ ├── CT_img_5.npy │ ├── CT_img_6.npy │ └── CT_img_7.npy └── AAPM_val_set │ ├── L067_FD_1mmB30_000.npy │ ├── L067_FD_1mmB30_001.npy │ ├── L067_FD_1mmB30_002.npy │ ├── L067_FD_1mmB30_003.npy │ ├── L067_FD_1mmB30_004.npy │ ├── L067_FD_1mmB30_005.npy │ ├── L067_FD_1mmB30_006.npy │ ├── L067_FD_1mmB30_007.npy │ └── L067_FD_1mmB30_008.npy ├── dataio.py ├── example_configs ├── aapm_hmc │ ├── gop_120_ckpt_final.yaml │ ├── gop_60_ckpt_final.yaml │ ├── inr-120-ckpt-final.yaml │ └── inr-60-ckpt-final.yaml ├── gop.yaml └── inr.yaml ├── experiment_scripts ├── run_grid_of_pixels.py ├── run_hmc_numpyro.py └── run_uncertainr.py ├── figs ├── ct_measurements.png ├── uncertainr_architecture.png ├── uncertainr_results.png └── uncertainr_teaser.png ├── loss_functions.py ├── modules.py ├── numpyro_port.py ├── requirements.txt └── training.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/README.md -------------------------------------------------------------------------------- /_utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/_utils.py -------------------------------------------------------------------------------- /checkpoints/gop-120/scan0_w500-d1_bslr0.pth: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/checkpoints/gop-120/scan0_w500-d1_bslr0.pth -------------------------------------------------------------------------------- /checkpoints/gop-120/scan1_w500-d1_bslr0.pth: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/checkpoints/gop-120/scan1_w500-d1_bslr0.pth -------------------------------------------------------------------------------- /checkpoints/gop-120/scan2_w500-d1_bslr0.pth: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/checkpoints/gop-120/scan2_w500-d1_bslr0.pth -------------------------------------------------------------------------------- /checkpoints/gop-120/scan3_w500-d1_bslr0.pth: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/checkpoints/gop-120/scan3_w500-d1_bslr0.pth -------------------------------------------------------------------------------- /checkpoints/gop-120/scan4_w500-d1_bslr0.pth: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/checkpoints/gop-120/scan4_w500-d1_bslr0.pth -------------------------------------------------------------------------------- /checkpoints/gop-120/scan5_w500-d1_bslr0.pth: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/checkpoints/gop-120/scan5_w500-d1_bslr0.pth -------------------------------------------------------------------------------- /checkpoints/gop-120/scan6_w500-d1_bslr0.pth: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/checkpoints/gop-120/scan6_w500-d1_bslr0.pth -------------------------------------------------------------------------------- /checkpoints/gop-120/scan7_w500-d1_bslr0.pth: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/checkpoints/gop-120/scan7_w500-d1_bslr0.pth -------------------------------------------------------------------------------- /checkpoints/gop-60/scan0_w500-d1_bslr0.pth: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/checkpoints/gop-60/scan0_w500-d1_bslr0.pth -------------------------------------------------------------------------------- /checkpoints/gop-60/scan1_w500-d1_bslr0.pth: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/checkpoints/gop-60/scan1_w500-d1_bslr0.pth -------------------------------------------------------------------------------- /checkpoints/gop-60/scan2_w500-d1_bslr0.pth: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/checkpoints/gop-60/scan2_w500-d1_bslr0.pth -------------------------------------------------------------------------------- /checkpoints/gop-60/scan3_w500-d1_bslr0.pth: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/checkpoints/gop-60/scan3_w500-d1_bslr0.pth -------------------------------------------------------------------------------- /checkpoints/gop-60/scan4_w500-d1_bslr0.pth: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/checkpoints/gop-60/scan4_w500-d1_bslr0.pth -------------------------------------------------------------------------------- /checkpoints/gop-60/scan5_w500-d1_bslr0.pth: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/checkpoints/gop-60/scan5_w500-d1_bslr0.pth -------------------------------------------------------------------------------- /checkpoints/gop-60/scan6_w500-d1_bslr0.pth: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/checkpoints/gop-60/scan6_w500-d1_bslr0.pth -------------------------------------------------------------------------------- /checkpoints/gop-60/scan7_w500-d1_bslr0.pth: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/checkpoints/gop-60/scan7_w500-d1_bslr0.pth -------------------------------------------------------------------------------- /checkpoints/mlp-120/scan0_w200-d4_bslr0.pth: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/checkpoints/mlp-120/scan0_w200-d4_bslr0.pth -------------------------------------------------------------------------------- /checkpoints/mlp-120/scan0_w200-d4_bslr1.pth: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/checkpoints/mlp-120/scan0_w200-d4_bslr1.pth -------------------------------------------------------------------------------- /checkpoints/mlp-120/scan1_w200-d4_bslr0.pth: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/checkpoints/mlp-120/scan1_w200-d4_bslr0.pth -------------------------------------------------------------------------------- /checkpoints/mlp-120/scan1_w200-d4_bslr1.pth: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/checkpoints/mlp-120/scan1_w200-d4_bslr1.pth -------------------------------------------------------------------------------- /checkpoints/mlp-120/scan2_w200-d4_bslr0.pth: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/checkpoints/mlp-120/scan2_w200-d4_bslr0.pth -------------------------------------------------------------------------------- /checkpoints/mlp-120/scan2_w200-d4_bslr1.pth: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/checkpoints/mlp-120/scan2_w200-d4_bslr1.pth -------------------------------------------------------------------------------- /checkpoints/mlp-120/scan3_w200-d4_bslr0.pth: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/checkpoints/mlp-120/scan3_w200-d4_bslr0.pth -------------------------------------------------------------------------------- /checkpoints/mlp-120/scan3_w200-d4_bslr1.pth: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/checkpoints/mlp-120/scan3_w200-d4_bslr1.pth -------------------------------------------------------------------------------- /checkpoints/mlp-120/scan4_w200-d4_bslr0.pth: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/checkpoints/mlp-120/scan4_w200-d4_bslr0.pth -------------------------------------------------------------------------------- /checkpoints/mlp-120/scan4_w200-d4_bslr1.pth: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/checkpoints/mlp-120/scan4_w200-d4_bslr1.pth -------------------------------------------------------------------------------- /checkpoints/mlp-120/scan5_w200-d4_bslr0.pth: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/checkpoints/mlp-120/scan5_w200-d4_bslr0.pth -------------------------------------------------------------------------------- /checkpoints/mlp-120/scan5_w200-d4_bslr1.pth: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/checkpoints/mlp-120/scan5_w200-d4_bslr1.pth -------------------------------------------------------------------------------- /checkpoints/mlp-120/scan6_w200-d4_bslr0.pth: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/checkpoints/mlp-120/scan6_w200-d4_bslr0.pth -------------------------------------------------------------------------------- /checkpoints/mlp-120/scan6_w200-d4_bslr1.pth: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/checkpoints/mlp-120/scan6_w200-d4_bslr1.pth -------------------------------------------------------------------------------- /checkpoints/mlp-120/scan7_w200-d4_bslr0.pth: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/checkpoints/mlp-120/scan7_w200-d4_bslr0.pth -------------------------------------------------------------------------------- /checkpoints/mlp-120/scan7_w200-d4_bslr1.pth: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/checkpoints/mlp-120/scan7_w200-d4_bslr1.pth -------------------------------------------------------------------------------- /checkpoints/mlp-60/scan0_w200-d4_bslr0.pth: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/checkpoints/mlp-60/scan0_w200-d4_bslr0.pth -------------------------------------------------------------------------------- /checkpoints/mlp-60/scan0_w200-d4_bslr1.pth: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/checkpoints/mlp-60/scan0_w200-d4_bslr1.pth -------------------------------------------------------------------------------- /checkpoints/mlp-60/scan1_w200-d4_bslr0.pth: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/checkpoints/mlp-60/scan1_w200-d4_bslr0.pth -------------------------------------------------------------------------------- /checkpoints/mlp-60/scan1_w200-d4_bslr1.pth: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/checkpoints/mlp-60/scan1_w200-d4_bslr1.pth -------------------------------------------------------------------------------- /checkpoints/mlp-60/scan2_w200-d4_bslr0.pth: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/checkpoints/mlp-60/scan2_w200-d4_bslr0.pth -------------------------------------------------------------------------------- /checkpoints/mlp-60/scan2_w200-d4_bslr1.pth: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/checkpoints/mlp-60/scan2_w200-d4_bslr1.pth -------------------------------------------------------------------------------- /checkpoints/mlp-60/scan3_w200-d4_bslr0.pth: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/checkpoints/mlp-60/scan3_w200-d4_bslr0.pth -------------------------------------------------------------------------------- /checkpoints/mlp-60/scan3_w200-d4_bslr1.pth: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/checkpoints/mlp-60/scan3_w200-d4_bslr1.pth -------------------------------------------------------------------------------- /checkpoints/mlp-60/scan4_w200-d4_bslr0.pth: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/checkpoints/mlp-60/scan4_w200-d4_bslr0.pth -------------------------------------------------------------------------------- /checkpoints/mlp-60/scan4_w200-d4_bslr1.pth: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/checkpoints/mlp-60/scan4_w200-d4_bslr1.pth -------------------------------------------------------------------------------- /checkpoints/mlp-60/scan5_w200-d4_bslr0.pth: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/checkpoints/mlp-60/scan5_w200-d4_bslr0.pth -------------------------------------------------------------------------------- /checkpoints/mlp-60/scan5_w200-d4_bslr1.pth: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/checkpoints/mlp-60/scan5_w200-d4_bslr1.pth -------------------------------------------------------------------------------- /checkpoints/mlp-60/scan6_w200-d4_bslr0.pth: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/checkpoints/mlp-60/scan6_w200-d4_bslr0.pth -------------------------------------------------------------------------------- /checkpoints/mlp-60/scan6_w200-d4_bslr1.pth: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/checkpoints/mlp-60/scan6_w200-d4_bslr1.pth -------------------------------------------------------------------------------- /checkpoints/mlp-60/scan7_w200-d4_bslr0.pth: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/checkpoints/mlp-60/scan7_w200-d4_bslr0.pth -------------------------------------------------------------------------------- /checkpoints/mlp-60/scan7_w200-d4_bslr1.pth: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/checkpoints/mlp-60/scan7_w200-d4_bslr1.pth -------------------------------------------------------------------------------- /conf/config.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/conf/config.yaml -------------------------------------------------------------------------------- /conf/data/aapm_2d.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/conf/data/aapm_2d.yaml -------------------------------------------------------------------------------- /conf/data/shepp_2d.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/conf/data/shepp_2d.yaml -------------------------------------------------------------------------------- /conf/job.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/conf/job.yaml -------------------------------------------------------------------------------- /conf/model/grid_of_pixels.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/conf/model/grid_of_pixels.yaml -------------------------------------------------------------------------------- /conf/model/mlp.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/conf/model/mlp.yaml -------------------------------------------------------------------------------- /conf/opt/adam.yaml: -------------------------------------------------------------------------------- 1 | name: adam 2 | lr: 3e-4 3 | weight_decay: 0 -------------------------------------------------------------------------------- /conf/opt/adamw.yaml: -------------------------------------------------------------------------------- 1 | name: adamw 2 | lr: 3e-4 3 | weight_decay: 0.001 -------------------------------------------------------------------------------- /conf/opt/sgd.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/conf/opt/sgd.yaml -------------------------------------------------------------------------------- /conf/reg/tv.yaml: -------------------------------------------------------------------------------- 1 | type: ANISO_TV # regularization types: None, TV 2 | coeff: 0 -------------------------------------------------------------------------------- /conf/uncertainty/ensemble.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/conf/uncertainty/ensemble.yaml -------------------------------------------------------------------------------- /conf/uncertainty/hmc.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/conf/uncertainty/hmc.yaml -------------------------------------------------------------------------------- /conf/uncertainty/mc_dropout.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/conf/uncertainty/mc_dropout.yaml -------------------------------------------------------------------------------- /data/AAPM_test_set/CT_img_0.npy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/data/AAPM_test_set/CT_img_0.npy -------------------------------------------------------------------------------- /data/AAPM_test_set/CT_img_1.npy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/data/AAPM_test_set/CT_img_1.npy -------------------------------------------------------------------------------- /data/AAPM_test_set/CT_img_2.npy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/data/AAPM_test_set/CT_img_2.npy -------------------------------------------------------------------------------- /data/AAPM_test_set/CT_img_3.npy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/data/AAPM_test_set/CT_img_3.npy -------------------------------------------------------------------------------- /data/AAPM_test_set/CT_img_4.npy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/data/AAPM_test_set/CT_img_4.npy -------------------------------------------------------------------------------- /data/AAPM_test_set/CT_img_5.npy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/data/AAPM_test_set/CT_img_5.npy -------------------------------------------------------------------------------- /data/AAPM_test_set/CT_img_6.npy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/data/AAPM_test_set/CT_img_6.npy -------------------------------------------------------------------------------- /data/AAPM_test_set/CT_img_7.npy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/data/AAPM_test_set/CT_img_7.npy -------------------------------------------------------------------------------- /data/AAPM_val_set/L067_FD_1mmB30_000.npy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/data/AAPM_val_set/L067_FD_1mmB30_000.npy -------------------------------------------------------------------------------- /data/AAPM_val_set/L067_FD_1mmB30_001.npy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/data/AAPM_val_set/L067_FD_1mmB30_001.npy -------------------------------------------------------------------------------- /data/AAPM_val_set/L067_FD_1mmB30_002.npy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/data/AAPM_val_set/L067_FD_1mmB30_002.npy -------------------------------------------------------------------------------- /data/AAPM_val_set/L067_FD_1mmB30_003.npy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/data/AAPM_val_set/L067_FD_1mmB30_003.npy -------------------------------------------------------------------------------- /data/AAPM_val_set/L067_FD_1mmB30_004.npy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/data/AAPM_val_set/L067_FD_1mmB30_004.npy -------------------------------------------------------------------------------- /data/AAPM_val_set/L067_FD_1mmB30_005.npy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/data/AAPM_val_set/L067_FD_1mmB30_005.npy -------------------------------------------------------------------------------- /data/AAPM_val_set/L067_FD_1mmB30_006.npy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/data/AAPM_val_set/L067_FD_1mmB30_006.npy -------------------------------------------------------------------------------- /data/AAPM_val_set/L067_FD_1mmB30_007.npy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/data/AAPM_val_set/L067_FD_1mmB30_007.npy -------------------------------------------------------------------------------- /data/AAPM_val_set/L067_FD_1mmB30_008.npy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/data/AAPM_val_set/L067_FD_1mmB30_008.npy -------------------------------------------------------------------------------- /dataio.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/dataio.py -------------------------------------------------------------------------------- /example_configs/aapm_hmc/gop_120_ckpt_final.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/example_configs/aapm_hmc/gop_120_ckpt_final.yaml -------------------------------------------------------------------------------- /example_configs/aapm_hmc/gop_60_ckpt_final.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/example_configs/aapm_hmc/gop_60_ckpt_final.yaml -------------------------------------------------------------------------------- /example_configs/aapm_hmc/inr-120-ckpt-final.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/example_configs/aapm_hmc/inr-120-ckpt-final.yaml -------------------------------------------------------------------------------- /example_configs/aapm_hmc/inr-60-ckpt-final.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/example_configs/aapm_hmc/inr-60-ckpt-final.yaml -------------------------------------------------------------------------------- /example_configs/gop.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/example_configs/gop.yaml -------------------------------------------------------------------------------- /example_configs/inr.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/example_configs/inr.yaml -------------------------------------------------------------------------------- /experiment_scripts/run_grid_of_pixels.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/experiment_scripts/run_grid_of_pixels.py -------------------------------------------------------------------------------- /experiment_scripts/run_hmc_numpyro.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/experiment_scripts/run_hmc_numpyro.py -------------------------------------------------------------------------------- /experiment_scripts/run_uncertainr.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/experiment_scripts/run_uncertainr.py -------------------------------------------------------------------------------- /figs/ct_measurements.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/figs/ct_measurements.png -------------------------------------------------------------------------------- /figs/uncertainr_architecture.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/figs/uncertainr_architecture.png -------------------------------------------------------------------------------- /figs/uncertainr_results.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/figs/uncertainr_results.png -------------------------------------------------------------------------------- /figs/uncertainr_teaser.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/figs/uncertainr_teaser.png -------------------------------------------------------------------------------- /loss_functions.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/loss_functions.py -------------------------------------------------------------------------------- /modules.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/modules.py -------------------------------------------------------------------------------- /numpyro_port.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/numpyro_port.py -------------------------------------------------------------------------------- /requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/requirements.txt -------------------------------------------------------------------------------- /training.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bobby-he/uncertainr/HEAD/training.py --------------------------------------------------------------------------------