├── .gitignore ├── CMakeLists.txt ├── LICENSE ├── MedSAM.png ├── MedSAMLite ├── CMakeLists.txt ├── MedSAMLite.py ├── Resources │ ├── Icons │ │ ├── CT.jpg │ │ ├── MR.png │ │ ├── MedSAMLite.png │ │ └── Screenshot.png │ ├── UI │ │ └── MedSAMLite.ui │ └── server_essentials │ │ ├── LICENSE │ │ ├── README.md │ │ ├── __init__.py │ │ ├── medsam_interface │ │ ├── __init__.py │ │ ├── engines │ │ │ ├── DAFTsam.py │ │ │ ├── __init__.py │ │ │ ├── classicmedsam.py │ │ │ ├── medficientsam.py │ │ │ ├── ovmedsam.py │ │ │ └── src │ │ │ │ ├── __init__.py │ │ │ │ ├── data │ │ │ │ ├── __init__.py │ │ │ │ ├── components │ │ │ │ │ ├── __init__.py │ │ │ │ │ └── medsam_dataset.py │ │ │ │ └── medsam_datamodule.py │ │ │ │ ├── export_onnx.py │ │ │ │ ├── export_torch.py │ │ │ │ ├── infer.py │ │ │ │ ├── losses │ │ │ │ ├── SAMLoss.py │ │ │ │ ├── __init__.py │ │ │ │ └── components │ │ │ │ │ └── IoULoss.py │ │ │ │ ├── metrics │ │ │ │ ├── __init__.py │ │ │ │ └── generalized_dice.py │ │ │ │ ├── models │ │ │ │ ├── __init__.py │ │ │ │ ├── base_sam │ │ │ │ │ ├── __init__.py │ │ │ │ │ └── sam.py │ │ │ │ ├── distill_module.py │ │ │ │ ├── efficientvit │ │ │ │ │ ├── README.md │ │ │ │ │ ├── __init__.py │ │ │ │ │ ├── apps │ │ │ │ │ │ ├── __init__.py │ │ │ │ │ │ ├── data_provider │ │ │ │ │ │ │ ├── __init__.py │ │ │ │ │ │ │ ├── augment │ │ │ │ │ │ │ │ ├── __init__.py │ │ │ │ │ │ │ │ ├── bbox.py │ │ │ │ │ │ │ │ └── color_aug.py │ │ │ │ │ │ │ ├── base.py │ │ │ │ │ │ │ └── random_resolution │ │ │ │ │ │ │ │ ├── __init__.py │ │ │ │ │ │ │ │ ├── _data_loader.py │ │ │ │ │ │ │ │ ├── _data_worker.py │ │ │ │ │ │ │ │ └── controller.py │ │ │ │ │ │ ├── setup.py │ │ │ │ │ │ ├── trainer │ │ │ │ │ │ │ ├── __init__.py │ │ │ │ │ │ │ ├── base.py │ │ │ │ │ │ │ └── run_config.py │ │ │ │ │ │ └── utils │ │ │ │ │ │ │ ├── __init__.py │ │ │ │ │ │ │ ├── dist.py │ │ │ │ │ │ │ ├── ema.py │ │ │ │ │ │ │ ├── export.py │ │ │ │ │ │ │ ├── init.py │ │ │ │ │ │ │ ├── lr.py │ │ │ │ │ │ │ ├── metric.py │ │ │ │ │ │ │ ├── misc.py │ │ │ │ │ │ │ └── opt.py │ │ │ │ │ ├── cls_model_zoo.py │ │ │ │ │ ├── clscore │ │ │ │ │ │ ├── __init__.py │ │ │ │ │ │ ├── data_provider │ │ │ │ │ │ │ ├── __init__.py │ │ │ │ │ │ │ └── imagenet.py │ │ │ │ │ │ └── trainer │ │ │ │ │ │ │ ├── __init__.py │ │ │ │ │ │ │ ├── cls_run_config.py │ │ │ │ │ │ │ ├── cls_trainer.py │ │ │ │ │ │ │ └── utils │ │ │ │ │ │ │ ├── __init__.py │ │ │ │ │ │ │ ├── label_smooth.py │ │ │ │ │ │ │ ├── metric.py │ │ │ │ │ │ │ └── mixup.py │ │ │ │ │ ├── models │ │ │ │ │ │ ├── __init__.py │ │ │ │ │ │ ├── efficientvit │ │ │ │ │ │ │ ├── __init__.py │ │ │ │ │ │ │ ├── backbone.py │ │ │ │ │ │ │ ├── cls.py │ │ │ │ │ │ │ ├── sam.py │ │ │ │ │ │ │ └── seg.py │ │ │ │ │ │ ├── nn │ │ │ │ │ │ │ ├── __init__.py │ │ │ │ │ │ │ ├── act.py │ │ │ │ │ │ │ ├── drop.py │ │ │ │ │ │ │ ├── norm.py │ │ │ │ │ │ │ └── ops.py │ │ │ │ │ │ └── utils │ │ │ │ │ │ │ ├── __init__.py │ │ │ │ │ │ │ ├── list.py │ │ │ │ │ │ │ ├── network.py │ │ │ │ │ │ │ └── random.py │ │ │ │ │ ├── sam_model_zoo.py │ │ │ │ │ ├── samcore │ │ │ │ │ │ ├── data_provider │ │ │ │ │ │ │ ├── __init__.py │ │ │ │ │ │ │ ├── sam.py │ │ │ │ │ │ │ └── utils.py │ │ │ │ │ │ └── trainer │ │ │ │ │ │ │ ├── __init__.py │ │ │ │ │ │ │ ├── sam_run_config.py │ │ │ │ │ │ │ ├── sam_trainer.py │ │ │ │ │ │ │ └── utils.py │ │ │ │ │ └── seg_model_zoo.py │ │ │ │ ├── finetune_module.py │ │ │ │ ├── lite_medsam │ │ │ │ │ ├── __init__.py │ │ │ │ │ ├── sam.py │ │ │ │ │ └── tiny_vit.py │ │ │ │ ├── onnx │ │ │ │ │ ├── __init__.py │ │ │ │ │ ├── decoder.py │ │ │ │ │ └── encoder.py │ │ │ │ └── segment_anything │ │ │ │ │ ├── README.md │ │ │ │ │ ├── __init__.py │ │ │ │ │ ├── automatic_mask_generator.py │ │ │ │ │ ├── build_sam.py │ │ │ │ │ ├── modeling │ │ │ │ │ ├── __init__.py │ │ │ │ │ ├── common.py │ │ │ │ │ ├── image_encoder.py │ │ │ │ │ ├── mask_decoder.py │ │ │ │ │ ├── prompt_encoder.py │ │ │ │ │ ├── sam.py │ │ │ │ │ └── transformer.py │ │ │ │ │ ├── predictor.py │ │ │ │ │ └── utils │ │ │ │ │ ├── __init__.py │ │ │ │ │ ├── amg.py │ │ │ │ │ ├── onnx.py │ │ │ │ │ └── transforms.py │ │ │ │ ├── schedulers │ │ │ │ └── __init__.py │ │ │ │ ├── train.py │ │ │ │ └── utils │ │ │ │ ├── __init__.py │ │ │ │ ├── instantiators.py │ │ │ │ ├── logging_utils.py │ │ │ │ ├── multiprocessing.py │ │ │ │ ├── pylogger.py │ │ │ │ ├── rich_utils.py │ │ │ │ ├── transforms.py │ │ │ │ ├── utils.py │ │ │ │ └── visualize.py │ │ ├── interface_impl.py │ │ └── models │ │ │ ├── classic │ │ │ └── medsam_lite.pth │ │ │ └── daft │ │ │ ├── positional_encoding.npy │ │ │ ├── prompt_encoder.bin │ │ │ └── prompt_encoder.xml │ │ ├── segment_anything │ │ ├── __init__.py │ │ ├── automatic_mask_generator.py │ │ ├── build_sam.py │ │ ├── modeling │ │ │ ├── __init__.py │ │ │ ├── common.py │ │ │ ├── image_encoder.py │ │ │ ├── mask_decoder.py │ │ │ ├── prompt_encoder.py │ │ │ ├── sam.py │ │ │ └── transformer.py │ │ ├── predictor.py │ │ └── utils │ │ │ ├── __init__.py │ │ │ ├── amg.py │ │ │ ├── onnx.py │ │ │ └── transforms.py │ │ ├── server.py │ │ ├── setup.py │ │ ├── tiny_vit_sam.py │ │ └── 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