├── 00_NGS_course_plan.pdf ├── 01_General_introduction.pdf ├── 02_Introduction_to_Linux.pdf ├── 03_read_generation_github.pdf ├── 04_assembly.pdf ├── 05_annotation.pdf ├── 06_variant_analysis.pdf ├── 07_RNA_to_reads_to_counts.pdf ├── 08_de_novo_transcriptome_assembly.pdf ├── DGE_analysis.R ├── LICENSE ├── README.md ├── RNA_seq_sample_sheet.csv ├── all_gene_ids_with_function.csv ├── construct_DeSeq2_input.py ├── construct_heatmap.py ├── contig_stats.py ├── example_config.txt ├── fasta2gff.py ├── identify_RBHs.py ├── map_annotation.py └── sspace_libraries.txt /00_NGS_course_plan.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bpucker/AppliedGenomeResearch/HEAD/00_NGS_course_plan.pdf -------------------------------------------------------------------------------- /01_General_introduction.pdf: -------------------------------------------------------------------------------- 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