├── LICENSE ├── Python_1_GettingStarted.pptx.pdf ├── Python_2_Functions.pptx.pdf ├── Python_3_ControlStructures.pptx.pdf ├── Python_4_FileHandling.pptx.pdf ├── Python_5_Modules.pptx.pdf ├── Python_6_ApplicationExamples.pptx.pdf ├── Python_7_AI.pptx.pdf ├── README.md └── data_examples ├── AtCol0_Exons.fasta.7z ├── CHS_vs_Digitalis.txt ├── Ct.cds.fasta.7z ├── README.md ├── UNKNOWN_DATA.ods ├── barplots.py ├── boxplot.py ├── construct_heatmap.py ├── expression_data.ods ├── gene_structure_plot.py ├── genetic_code.csv ├── heatmap.html ├── hist_indel_lengths.py ├── load_blast_results.py ├── results.txt └── scatter_plot.py /LICENSE: -------------------------------------------------------------------------------- 1 | GNU GENERAL PUBLIC LICENSE 2 | Version 3, 29 June 2007 3 | 4 | Copyright (C) 2007 Free Software Foundation, Inc. 5 | Everyone is permitted to copy and distribute verbatim copies 6 | of this license document, but changing it is not allowed. 7 | 8 | Preamble 9 | 10 | The GNU General Public License is a free, copyleft license for 11 | software and other kinds of works. 12 | 13 | The licenses for most software and other practical works are designed 14 | to take away your freedom to share and change the works. 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Interpretation of Sections 15 and 16. 613 | 614 | If the disclaimer of warranty and limitation of liability provided 615 | above cannot be given local legal effect according to their terms, 616 | reviewing courts shall apply local law that most closely approximates 617 | an absolute waiver of all civil liability in connection with the 618 | Program, unless a warranty or assumption of liability accompanies a 619 | copy of the Program in return for a fee. 620 | 621 | END OF TERMS AND CONDITIONS 622 | 623 | How to Apply These Terms to Your New Programs 624 | 625 | If you develop a new program, and you want it to be of the greatest 626 | possible use to the public, the best way to achieve this is to make it 627 | free software which everyone can redistribute and change under these terms. 628 | 629 | To do so, attach the following notices to the program. It is safest 630 | to attach them to the start of each source file to most effectively 631 | state the exclusion of warranty; and each file should have at least 632 | the "copyright" line and a pointer to where the full notice is found. 633 | 634 | 635 | Copyright (C) 636 | 637 | This program is free software: you can redistribute it and/or modify 638 | it under the terms of the GNU General Public License as published by 639 | the Free Software Foundation, either version 3 of the License, or 640 | (at your option) any later version. 641 | 642 | This program is distributed in the hope that it will be useful, 643 | but WITHOUT ANY WARRANTY; without even the implied warranty of 644 | MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the 645 | GNU General Public License for more details. 646 | 647 | You should have received a copy of the GNU General Public License 648 | along with this program. If not, see . 649 | 650 | Also add information on how to contact you by electronic and paper mail. 651 | 652 | If the program does terminal interaction, make it output a short 653 | notice like this when it starts in an interactive mode: 654 | 655 | Copyright (C) 656 | This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'. 657 | This is free software, and you are welcome to redistribute it 658 | under certain conditions; type `show c' for details. 659 | 660 | The hypothetical commands `show w' and `show c' should show the appropriate 661 | parts of the General Public License. Of course, your program's commands 662 | might be different; for a GUI interface, you would use an "about box". 663 | 664 | You should also get your employer (if you work as a programmer) or school, 665 | if any, to sign a "copyright disclaimer" for the program, if necessary. 666 | For more information on this, and how to apply and follow the GNU GPL, see 667 | . 668 | 669 | The GNU General Public License does not permit incorporating your program 670 | into proprietary programs. If your program is a subroutine library, you 671 | may consider it more useful to permit linking proprietary applications with 672 | the library. If this is what you want to do, use the GNU Lesser General 673 | Public License instead of this License. But first, please read 674 | . 675 | -------------------------------------------------------------------------------- /Python_1_GettingStarted.pptx.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bpucker/PythonTUBS/f3f35a976450afcf8b7a7edf191ff2cb691833a5/Python_1_GettingStarted.pptx.pdf -------------------------------------------------------------------------------- /Python_2_Functions.pptx.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bpucker/PythonTUBS/f3f35a976450afcf8b7a7edf191ff2cb691833a5/Python_2_Functions.pptx.pdf -------------------------------------------------------------------------------- /Python_3_ControlStructures.pptx.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bpucker/PythonTUBS/f3f35a976450afcf8b7a7edf191ff2cb691833a5/Python_3_ControlStructures.pptx.pdf -------------------------------------------------------------------------------- /Python_4_FileHandling.pptx.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bpucker/PythonTUBS/f3f35a976450afcf8b7a7edf191ff2cb691833a5/Python_4_FileHandling.pptx.pdf -------------------------------------------------------------------------------- /Python_5_Modules.pptx.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bpucker/PythonTUBS/f3f35a976450afcf8b7a7edf191ff2cb691833a5/Python_5_Modules.pptx.pdf -------------------------------------------------------------------------------- /Python_6_ApplicationExamples.pptx.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bpucker/PythonTUBS/f3f35a976450afcf8b7a7edf191ff2cb691833a5/Python_6_ApplicationExamples.pptx.pdf -------------------------------------------------------------------------------- /Python_7_AI.pptx.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bpucker/PythonTUBS/f3f35a976450afcf8b7a7edf191ff2cb691833a5/Python_7_AI.pptx.pdf -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- 1 | # Python for Life Scientists 2 | 3 | Interested in taking this course? Students at TU Braunschweig are encouraged to contact [Boas Pucker](https://www.izmb.uni-bonn.de/en/molecular-plant-sciences/contact). 4 | 5 | This course is a Python introduction for all life scientists. Many examples have a focus on genomics and sequence analysis. Please feel free to re-use the material based on terms of a CC-BY license. 6 | 7 | Please find additional data sets for exercises in the data_examples subfolder. 8 | 9 | Please find additional scripts here (original Python course developed by Boas Pucker at CeBiTec / Bielefeld University): 10 | https://github.com/bpucker/APPLS 11 | 12 | 13 | 14 | # References 15 | 16 | Pucker B., Schilbert H. M., and Schumacher S. F. (2019). Integrating Molecular Biology and Bioinformatics Education. Journal of Integrative Bioinformatics, vol. 16, no. 3, 2019, pp. 20190005. doi: [10.1515/jib-2019-0005](https://doi.org/10.1515/jib-2019-0005) 17 | 18 | Pucker, B., Holtgräwe, D., Rosleff Sörensen, T., Stracke, R., Viehöver, P., and Weisshaar, B. (2016). A de novo Genome Sequence Assembly of the Arabidopsis thaliana Accession Niederzenz-1 Displays Presence/Absence Variation and Strong Synteny. PloS-ONE 11:e0164321. doi: [10.1371/journal.pone.0164321](https://doi.org/10.1371/journal.pone.0164321). 19 | 20 | Pucker, B., Holtgräwe, D., & Weisshaar, B. (2017). Consideration of non-canonical splice sites improves gene prediction on the Arabidopsis thaliana Niederzenz-1 genome sequence. BMC Research Notes, 10, 667. doi: [10.1186/s13104-017-2985-y](https://doi.org/10.1186/s13104-017-2985-y). 21 | 22 | Haak, M., Vinke, S., Keller, W., Droste, J., Rückert, C., Kalinowski, J., & Pucker, B. (2018). High Quality de novo Transcriptome Assembly of Croton tiglium. Frontiers in Molecular Biosciences, 5. doi: [10.3389/fmolb.2018.00062](https://doi.org/10.3389/fmolb.2018.00062). 23 | -------------------------------------------------------------------------------- /data_examples/AtCol0_Exons.fasta.7z: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bpucker/PythonTUBS/f3f35a976450afcf8b7a7edf191ff2cb691833a5/data_examples/AtCol0_Exons.fasta.7z -------------------------------------------------------------------------------- /data_examples/CHS_vs_Digitalis.txt: -------------------------------------------------------------------------------- 1 | gi|6684379 ctg006430 87.500 240 29 1 66 305 4896690 4895974 2.51e-165 435 2 | gi|6684379 ctg006430 87.912 91 11 0 305 395 4895977 4895705 2.51e-165 171 3 | gi|6684379 ctg006430 75.862 58 14 0 8 65 4898648 4898475 1.72e-20 98.6 4 | gi|6684379 ctg002050 86.667 240 31 1 66 305 7876034 7875318 3.22e-164 431 5 | gi|6684379 ctg002050 87.912 91 11 0 305 395 7875321 7875049 3.22e-164 171 6 | gi|6684379 ctg002050 77.586 58 13 0 8 65 7876899 7876726 4.85e-21 100 7 | gi|6684379 ctg002560 85.520 221 31 1 175 395 314196 314855 8.71e-162 387 8 | gi|6684379 ctg002560 90.566 106 10 0 66 171 313888 314205 8.71e-162 207 9 | gi|6684379 ctg002560 75.862 58 14 0 8 65 311929 312102 1.55e-20 98.6 10 | gi|6684379 ctg000920 64.371 334 118 1 61 394 8570996 8571994 5.12e-145 459 11 | gi|6684379 ctg000920 58.182 55 23 0 8 62 8570766 8570930 4.12e-13 75.9 12 | gi|6684379 ctg000920 20.312 256 159 7 142 358 12561792 12561043 1.26e-05 52.4 13 | gi|6684379 ctg003400 42.900 331 185 3 68 396 3061487 3060501 1.68e-81 276 14 | gi|6684379 ctg000510 35.821 268 138 4 20 256 7158034 7157240 7.96e-64 165 15 | gi|6684379 ctg000510 35.211 142 89 1 252 393 7157181 7156765 7.96e-64 102 16 | gi|6684379 ctg004420 32.941 85 50 3 309 393 1149346 1149579 4.53e-09 45.1 17 | gi|6684379 ctg004420 25.581 172 110 5 133 296 1148750 1149235 4.53e-09 38.5 18 | gi|6684379 ctg001730 25.954 262 144 12 155 380 1423958 1424701 8.57e-07 55.8 19 | gi|6684379 ctg001730 24.138 290 175 11 124 380 9236509 9235676 3.80e-04 47.4 20 | gi|6684379 ctg001730 25.368 272 151 11 155 389 8691526 8690756 0.001 45.8 21 | gi|6684379 ctg003440 24.427 262 148 11 155 380 2769425 2770168 1.35e-05 52.0 22 | gi|6684379 ctg003440 24.138 290 175 11 124 380 7073764 7072931 8.25e-04 46.2 23 | gi|6684379 ctg001660 20.312 256 159 7 142 358 10084953 10084204 1.55e-05 52.0 24 | gi|6684379 ctg005830 23.194 263 150 9 155 380 987864 987121 1.89e-05 51.6 25 | gi|6684379 ctg005830 22.527 364 220 13 54 380 107462 108478 6.42e-04 46.6 26 | gi|6684379 ctg000290 25.191 262 146 11 155 380 9197931 9197188 2.01e-05 51.6 27 | gi|6684379 ctg000290 25.573 262 145 12 155 380 9208006 9207263 2.35e-05 51.2 28 | gi|6684379 ctg000290 22.780 259 146 10 168 389 7923698 7924423 4.32e-04 47.4 29 | gi|6684379 ctg000290 30.380 79 48 3 315 393 2988447 2988662 0.40 37.7 30 | gi|6684379 ctg000290 27.103 107 75 2 125 231 2987520 2987831 0.85 36.6 31 | gi|6684379 ctg001390 20.930 258 159 7 142 358 23849265 23848504 3.21e-05 50.8 32 | gi|6684379 ctg001390 29.213 89 49 3 113 194 3127324 3127569 0.51 37.4 33 | gi|6684379 ctg003630 22.634 243 138 10 103 314 10354834 10355505 4.73e-05 41.2 34 | gi|6684379 ctg003630 30.952 42 28 1 341 382 10355532 10355654 4.73e-05 28.5 35 | gi|6684379 ctg006640 20.939 277 182 9 142 393 3123280 3124074 7.69e-05 49.7 36 | gi|6684379 ctg003270 23.438 256 158 9 155 380 8720914 8721657 6.71e-04 46.6 37 | gi|6684379 ctg005670 24.138 290 175 11 124 380 1329422 1330255 7.12e-04 46.6 38 | gi|6684379 ctg005350 56.410 39 17 0 153 191 4688485 4688601 0.001 46.2 39 | gi|6684379 ctg005580 20.661 363 228 10 54 380 534991 536007 0.005 43.9 40 | gi|6684379 ctg000930 24.125 257 155 10 155 380 966967 967710 0.006 43.5 41 | gi|6684379 ctg005810 21.739 368 218 14 54 380 88069 89085 0.006 43.5 42 | gi|6684379 ctg006570 26.087 161 101 7 232 389 1917928 1918365 0.006 43.5 43 | gi|6684379 ctg006570 27.723 101 69 2 132 231 1917370 1917663 0.054 40.4 44 | gi|6684379 ctg005680 23.574 263 149 10 155 380 1795654 1796397 0.029 41.6 45 | gi|6684379 ctg005680 26.496 117 80 4 246 358 5266649 5266993 2.0 35.4 46 | gi|6684379 ctg004770 30.631 111 60 5 283 393 5837416 5837697 0.056 40.4 47 | gi|6684379 ctg004770 33.333 72 43 2 309 380 5850303 5850503 0.13 39.3 48 | gi|6684379 ctg003600 36.111 72 41 3 309 380 2148398 2148598 0.10 39.7 49 | gi|6684379 ctg001710 36.111 72 41 3 309 380 1457542 1457742 0.11 39.7 50 | gi|6684379 ctg005840 24.845 161 103 7 232 389 113758 114195 0.12 39.3 51 | gi|6684379 ctg005840 25.743 101 71 2 132 231 113199 113492 0.37 37.7 52 | gi|6684379 ctg003490 24.845 161 103 7 232 389 2247974 2247537 0.17 38.9 53 | gi|6684379 ctg003490 25.743 101 71 2 132 231 2248533 2248240 0.37 37.7 54 | gi|6684379 ctg000360 30.380 79 48 3 315 393 2183120 2182905 0.20 38.5 55 | gi|6684379 ctg000360 27.103 107 75 2 125 231 2184070 2183759 1.0 36.6 56 | gi|6684379 ctg005780 34.722 72 42 3 309 380 189831 189631 0.23 38.5 57 | gi|6684379 ctg004730 33.333 72 43 2 309 380 1110238 1110038 0.25 38.5 58 | gi|6684379 ctg003150 33.333 72 43 3 309 380 4064346 4064146 1.2 36.2 59 | gi|6684379 ctg003150 29.787 94 61 3 155 246 4065321 4065049 3.4 34.7 60 | gi|6684379 ctg005380 39.024 41 25 0 312 352 63450 63572 4.2 34.3 61 | AEO45114.1 ctg002050 86.192 239 33 0 61 299 7876034 7875318 1.10e-164 438 62 | AEO45114.1 ctg002050 86.517 89 12 0 299 387 7875321 7875055 1.10e-164 165 63 | AEO45114.1 ctg002050 75.410 61 15 0 1 61 7876905 7876723 3.62e-22 103 64 | AEO45114.1 ctg002050 37.500 48 30 0 19 66 8622061 8622204 6.7 33.9 65 | AEO45114.1 ctg002560 83.945 218 35 0 170 387 314196 314849 5.80e-161 389 66 | AEO45114.1 ctg002560 88.679 106 12 0 61 166 313888 314205 5.80e-161 202 67 | AEO45114.1 ctg002560 75.410 61 15 0 1 61 311923 312105 1.12e-22 104 68 | AEO45114.1 ctg000920 63.855 332 120 0 56 387 8570996 8571991 5.97e-146 461 69 | AEO45114.1 ctg000920 57.895 57 24 0 1 57 8570760 8570930 2.84e-14 79.3 70 | AEO45114.1 ctg000920 17.869 291 188 8 137 388 12561792 12560956 0.002 45.4 71 | AEO45114.1 ctg006430 85.774 239 34 0 61 299 4896690 4895974 1.34e-137 437 72 | AEO45114.1 ctg006430 74.766 107 27 0 281 387 4896031 4895711 2.22e-43 166 73 | AEO45114.1 ctg006430 75.410 61 15 0 1 61 4898654 4898472 1.27e-22 104 74 | AEO45114.1 ctg003400 43.465 329 179 3 63 387 3061487 3060510 8.65e-83 280 75 | AEO45114.1 ctg000510 36.330 267 139 2 15 251 7158034 7157237 4.89e-69 172 76 | AEO45114.1 ctg000510 38.732 142 84 1 246 387 7157181 7156765 4.89e-69 113 77 | AEO45114.1 ctg001730 25.287 261 146 9 150 374 1423958 1424701 1.11e-08 62.0 78 | AEO45114.1 ctg001730 24.715 263 145 10 150 374 9236419 9235676 6.11e-07 56.2 79 | AEO45114.1 ctg001730 24.818 274 149 13 150 383 8691526 8690756 3.14e-04 47.8 80 | AEO45114.1 ctg001730 28.788 66 42 1 309 374 4145334 4145152 6.5 33.9 81 | AEO45114.1 ctg003440 24.904 261 147 9 150 374 2769425 2770168 1.06e-07 58.9 82 | AEO45114.1 ctg003440 25.095 263 144 11 150 374 7073674 7072931 6.67e-07 56.2 83 | AEO45114.1 ctg003440 27.174 92 59 3 285 374 4515953 4515696 8.7 33.5 84 | AEO45114.1 ctg005670 24.710 259 150 9 150 374 1329512 1330255 3.53e-07 57.0 85 | AEO45114.1 ctg000290 24.521 261 148 9 150 374 9197931 9197188 6.06e-07 56.2 86 | AEO45114.1 ctg000290 24.521 261 148 9 150 374 9208006 9207263 7.03e-07 56.2 87 | AEO45114.1 ctg000290 21.429 350 224 12 71 389 7923452 7924441 5.82e-05 50.1 88 | AEO45114.1 ctg000290 29.213 89 61 1 138 226 2987571 2987831 0.22 38.5 89 | AEO45114.1 ctg000290 26.582 79 51 1 309 387 2988447 2988662 0.82 36.6 90 | AEO45114.1 ctg005830 24.904 261 147 9 150 374 987864 987121 6.84e-07 56.2 91 | AEO45114.1 ctg005830 24.118 340 199 12 71 374 107528 108478 2.82e-06 54.3 92 | AEO45114.1 ctg003630 38.636 44 27 0 265 308 10355374 10355505 8.33e-07 43.9 93 | AEO45114.1 ctg003630 36.957 46 20 2 335 376 10355532 10355654 8.33e-07 32.0 94 | AEO45114.1 ctg003630 48.718 39 19 1 211 248 10355045 10355161 0.008 31.6 95 | AEO45114.1 ctg003630 48.276 29 15 0 178 206 10354948 10355034 0.008 30.0 96 | AEO45114.1 ctg005810 24.118 340 199 12 71 374 88135 89085 3.93e-06 53.9 97 | AEO45114.1 ctg005580 22.687 335 210 12 71 374 535057 536007 7.61e-05 49.7 98 | AEO45114.1 ctg005680 22.687 335 210 12 71 374 1795447 1796397 1.10e-04 49.3 99 | AEO45114.1 ctg005680 26.613 124 84 5 240 359 5266649 5267011 6.1 33.9 100 | AEO45114.1 ctg006640 20.285 281 180 10 137 388 3123280 3124077 0.001 46.2 101 | AEO45114.1 ctg001660 17.869 291 188 7 137 388 10084953 10084117 0.001 45.8 102 | AEO45114.1 ctg005350 56.410 39 17 0 148 186 4688485 4688601 0.001 45.8 103 | AEO45114.1 ctg004420 30.588 85 52 2 303 387 1149346 1149579 0.004 44.3 104 | AEO45114.1 ctg004420 30.303 99 62 2 128 226 1148750 1149025 0.37 37.7 105 | AEO45114.1 ctg003270 23.256 258 155 10 150 374 8720914 8721657 0.005 43.9 106 | AEO45114.1 ctg006570 29.703 101 67 2 127 226 1917370 1917663 0.005 43.5 107 | AEO45114.1 ctg006570 27.160 81 52 2 303 383 1918144 1918365 0.042 40.8 108 | AEO45114.1 ctg001390 18.815 287 182 9 143 388 23849247 23848417 0.015 42.4 109 | AEO45114.1 ctg001390 30.337 89 48 3 108 189 3127324 3127569 0.48 37.4 110 | AEO45114.1 ctg000930 23.552 259 153 9 150 374 966967 967710 0.025 41.6 111 | AEO45114.1 ctg005840 28.000 100 70 1 127 226 113199 113492 0.028 41.6 112 | AEO45114.1 ctg005840 25.225 111 73 4 275 383 113887 114195 0.17 38.9 113 | AEO45114.1 ctg003490 28.000 100 70 1 127 226 2248533 2248240 0.028 41.6 114 | AEO45114.1 ctg003490 25.225 111 73 4 275 383 2247845 2247537 0.20 38.5 115 | AEO45114.1 ctg004770 26.364 110 70 3 267 374 5850201 5850503 0.055 40.4 116 | AEO45114.1 ctg004770 27.586 87 54 3 303 388 5837464 5837700 0.72 37.0 117 | AEO45114.1 ctg003150 30.928 97 62 3 150 245 4065321 4065043 0.20 38.5 118 | AEO45114.1 ctg003150 30.137 73 44 2 303 374 4064346 4064146 0.90 36.6 119 | AEO45114.1 ctg001710 30.556 72 45 1 303 374 1457542 1457742 0.23 38.5 120 | AEO45114.1 ctg000360 26.882 93 66 1 138 230 2184019 2183747 0.33 38.1 121 | AEO45114.1 ctg000360 25.424 177 97 10 217 387 2183348 2182905 3.5 34.7 122 | AEO45114.1 ctg005780 29.167 72 46 1 303 374 189831 189631 0.44 37.4 123 | AEO45114.1 ctg005780 26.282 156 103 5 71 226 190582 190151 2.7 35.0 124 | AEO45114.1 ctg003600 30.137 73 44 2 303 374 2148398 2148598 0.90 36.6 125 | AEO45114.1 ctg004040 48.571 35 14 1 225 259 845164 845072 1.0 29.6 126 | AEO45114.1 ctg004040 58.333 24 6 1 205 228 845211 845152 1.0 25.0 127 | AEO45114.1 ctg004730 21.198 217 124 8 193 374 1110652 1110038 1.0 36.2 128 | AEO45114.1 ctg003290 36.066 61 37 1 150 210 2081519 2081343 4.7 34.3 129 | P23418.2 ctg002050 87.448 239 30 0 61 299 7876034 7875318 1.40e-157 445 130 | P23418.2 ctg002050 88.764 89 10 0 299 387 7875321 7875055 1.40e-157 134 131 | P23418.2 ctg002050 88.333 60 7 0 1 60 7876905 7876726 1.19e-26 116 132 | P23418.2 ctg006430 87.029 239 31 0 61 299 4896690 4895974 5.14e-157 443 133 | P23418.2 ctg006430 88.764 89 10 0 299 387 4895977 4895711 5.14e-157 134 134 | P23418.2 ctg006430 88.333 60 7 0 1 60 4898654 4898475 2.10e-27 119 135 | P23418.2 ctg002560 86.697 218 29 0 170 387 314196 314849 4.65e-153 366 136 | P23418.2 ctg002560 87.736 106 13 0 61 166 313888 314205 4.65e-153 199 137 | P23418.2 ctg002560 88.333 60 7 0 1 60 311923 312102 2.09e-27 119 138 | P23418.2 ctg000920 64.458 332 118 0 56 387 8570996 8571991 4.27e-141 437 139 | P23418.2 ctg000920 63.158 57 21 0 1 57 8570760 8570930 4.27e-141 88.6 140 | P23418.2 ctg000920 19.200 250 162 6 137 349 12561792 12561052 0.002 45.4 141 | P23418.2 ctg003400 42.813 327 184 2 63 387 3061487 3060510 5.78e-77 263 142 | P23418.2 ctg003400 37.288 59 36 1 6 64 3061985 3061812 0.046 40.8 143 | P23418.2 ctg000510 37.828 267 135 2 15 251 7158034 7157237 1.15e-65 178 144 | P23418.2 ctg000510 37.063 143 87 1 246 388 7157181 7156762 1.15e-65 95.1 145 | P23418.2 ctg001730 26.033 242 137 8 138 344 1423922 1424626 1.39e-07 58.5 146 | P23418.2 ctg001730 24.082 245 142 7 138 346 9236455 9235745 5.34e-05 50.1 147 | P23418.2 ctg001730 28.270 237 120 12 150 346 8691526 8690846 0.008 43.1 148 | P23418.2 ctg000290 25.620 242 138 8 138 344 9208042 9207338 3.05e-06 54.3 149 | P23418.2 ctg000290 25.620 242 138 8 138 344 9197967 9197263 4.29e-06 53.5 150 | P23418.2 ctg000290 23.151 311 187 12 71 346 7923452 7924333 0.001 45.8 151 | P23418.2 ctg000290 28.090 89 62 1 138 226 2987571 2987831 0.12 39.3 152 | P23418.2 ctg003440 25.620 242 138 8 138 344 2769389 2770093 3.08e-06 54.3 153 | P23418.2 ctg003440 23.868 243 141 7 138 344 7073710 7073006 5.39e-05 50.1 154 | P23418.2 ctg005830 26.522 230 127 8 150 344 987864 987196 3.83e-06 53.9 155 | P23418.2 ctg005830 23.794 311 185 11 71 346 107528 108409 0.002 45.4 156 | P23418.2 ctg005670 24.066 241 147 6 138 346 1329476 1330186 2.60e-05 51.2 157 | P23418.2 ctg003630 53.846 39 17 1 211 248 10355045 10355161 1.38e-04 37.7 158 | P23418.2 ctg003630 48.276 29 15 0 178 206 10354948 10355034 1.38e-04 30.0 159 | P23418.2 ctg003630 36.364 44 28 0 265 308 10355374 10355505 0.032 41.2 160 | P23418.2 ctg001660 19.200 250 162 6 137 349 10084953 10084213 5.18e-04 47.0 161 | P23418.2 ctg005810 23.794 311 185 11 71 346 88135 89016 0.003 44.7 162 | P23418.2 ctg005580 22.549 306 195 9 71 346 535057 535938 0.005 43.9 163 | P23418.2 ctg006640 21.162 241 155 7 137 349 3123280 3123981 0.008 43.1 164 | P23418.2 ctg005680 23.151 311 187 12 71 346 1795447 1796328 0.008 43.1 165 | P23418.2 ctg005680 33.735 83 49 2 162 240 5266255 5266497 4.1 34.3 166 | P23418.2 ctg005350 50.000 42 21 0 145 186 4688476 4688601 0.017 42.0 167 | P23418.2 ctg006570 28.713 101 68 2 127 226 1917370 1917663 0.022 41.6 168 | P23418.2 ctg006570 34.091 44 29 0 303 346 1918144 1918275 1.3 36.2 169 | P23418.2 ctg004420 43.182 44 25 0 303 346 1149346 1149477 0.044 40.8 170 | P23418.2 ctg004420 29.293 99 63 2 128 226 1148750 1149025 2.5 35.0 171 | P23418.2 ctg001390 21.032 252 147 8 143 349 23849247 23848513 0.045 40.8 172 | P23418.2 ctg005840 27.000 100 71 1 127 226 113199 113492 0.12 39.3 173 | P23418.2 ctg005840 34.091 44 29 0 303 346 113974 114105 1.6 35.8 174 | P23418.2 ctg003490 27.000 100 71 1 127 226 2248533 2248240 0.12 39.3 175 | P23418.2 ctg003490 34.091 44 29 0 303 346 2247758 2247627 1.2 36.2 176 | P23418.2 ctg000360 28.090 89 62 1 138 226 2184019 2183759 0.19 38.9 177 | P23418.2 ctg003270 22.857 245 145 8 138 346 8720878 8721588 0.21 38.5 178 | P23418.2 ctg001260 31.034 87 51 2 165 242 11482 11222 0.25 38.5 179 | P23418.2 ctg000930 22.822 241 150 6 138 346 966931 967641 0.38 37.7 180 | P23418.2 ctg004040 54.839 31 10 1 229 259 845152 845072 0.69 32.0 181 | P23418.2 ctg004040 48.148 27 10 1 205 231 845211 845143 0.69 23.1 182 | P23418.2 ctg005780 36.364 44 28 0 303 346 189831 189700 1.8 35.4 183 | P23418.2 ctg005780 25.000 156 105 5 71 226 190582 190151 6.8 33.9 184 | P23418.2 ctg006420 29.870 77 44 2 309 385 801157 800957 2.0 35.4 185 | P23418.2 ctg004770 36.364 44 28 0 303 346 5850303 5850434 2.1 35.4 186 | P23418.2 ctg004770 36.364 44 28 0 303 346 5837464 5837595 4.9 34.3 187 | P23418.2 ctg001710 36.364 44 28 0 303 346 1457542 1457673 2.6 35.0 188 | P23418.2 ctg003150 36.364 44 28 0 303 346 4064346 4064215 2.9 35.0 189 | P23418.2 ctg003150 26.804 97 66 3 150 245 4065321 4065043 7.0 33.5 190 | P23418.2 ctg003290 42.857 49 26 1 162 210 2081483 2081343 4.0 34.3 191 | P23418.2 ctg004730 34.091 44 29 0 303 346 1110238 1110107 4.3 34.3 192 | P23418.2 ctg003600 36.364 44 28 0 303 346 2148398 2148529 6.4 33.9 193 | NP_001142246.1 ctg002050 86.192 239 33 0 65 303 7876034 7875318 6.16e-157 410 194 | NP_001142246.1 ctg002050 82.796 93 16 0 303 395 7875321 7875043 6.16e-157 167 195 | NP_001142246.1 ctg002050 75.000 64 16 0 1 64 7876917 7876726 6.46e-25 112 196 | NP_001142246.1 ctg006430 85.774 239 34 0 65 303 4896690 4895974 3.05e-156 408 197 | NP_001142246.1 ctg006430 82.796 93 16 0 303 395 4895977 4895699 3.05e-156 167 198 | NP_001142246.1 ctg006430 78.125 64 14 0 1 64 4898666 4898475 3.37e-26 115 199 | NP_001142246.1 ctg002560 82.432 222 39 0 174 395 314196 314861 1.09e-152 359 200 | NP_001142246.1 ctg002560 88.679 106 12 0 65 170 313888 314205 1.09e-152 204 201 | NP_001142246.1 ctg002560 78.125 64 14 0 1 64 311911 312102 3.76e-26 115 202 | NP_001142246.1 ctg000920 64.583 336 119 0 60 395 8570996 8572003 2.06e-140 442 203 | NP_001142246.1 ctg000920 57.143 56 24 0 6 61 8570763 8570930 2.06e-140 80.9 204 | NP_001142246.1 ctg000920 24.419 86 56 2 307 391 12561192 12560959 1.8 35.4 205 | NP_001142246.1 ctg003400 39.577 331 197 2 67 395 3061487 3060498 1.56e-70 245 206 | NP_001142246.1 ctg003400 40.909 66 37 2 3 68 3062003 3061812 0.024 41.6 207 | NP_001142246.1 ctg000510 38.060 268 135 2 19 256 7158034 7157234 1.91e-59 149 208 | NP_001142246.1 ctg000510 34.507 142 90 1 250 391 7157181 7156765 1.91e-59 103 209 | NP_001142246.1 ctg003630 36.364 44 28 0 269 312 10355374 10355505 3.10e-05 40.4 210 | NP_001142246.1 ctg003630 30.952 42 28 1 339 380 10355532 10355654 3.10e-05 29.6 211 | NP_001142246.1 ctg005350 58.974 39 16 0 152 190 4688485 4688601 0.001 46.2 212 | NP_001142246.1 ctg001730 24.176 273 158 11 142 378 1423922 1424701 0.001 45.8 213 | NP_001142246.1 ctg001730 30.556 72 45 3 307 378 9235876 9235676 0.86 36.6 214 | NP_001142246.1 ctg001730 30.488 82 48 3 307 387 8690977 8690756 1.7 35.8 215 | NP_001142246.1 ctg004420 30.588 85 52 3 307 391 1149346 1149579 0.011 42.7 216 | NP_001142246.1 ctg003440 23.443 273 160 11 142 378 2769389 2770168 0.018 42.0 217 | NP_001142246.1 ctg003440 24.818 274 155 11 142 378 7073710 7072931 0.17 38.9 218 | NP_001142246.1 ctg006640 26.744 86 54 3 307 391 3123841 3124074 0.023 41.6 219 | NP_001142246.1 ctg000290 23.443 273 160 11 142 378 9208042 9207263 0.039 41.2 220 | NP_001142246.1 ctg000290 23.443 273 160 11 142 378 9197967 9197188 0.039 41.2 221 | NP_001142246.1 ctg000290 28.235 85 54 3 307 391 7924202 7924435 0.20 38.9 222 | NP_001142246.1 ctg000290 26.582 79 51 3 313 391 2988447 2988662 3.7 34.7 223 | NP_001142246.1 ctg005830 23.443 273 160 11 142 378 987900 987121 0.043 40.8 224 | NP_001142246.1 ctg005830 31.944 72 44 2 307 378 108278 108478 0.30 38.1 225 | NP_001142246.1 ctg003150 30.612 98 61 3 283 378 4064424 4064146 0.050 40.8 226 | NP_001142246.1 ctg004770 30.556 72 45 2 307 378 5850303 5850503 0.12 39.7 227 | NP_001142246.1 ctg004770 30.556 72 45 2 307 378 5837464 5837664 0.16 38.9 228 | NP_001142246.1 ctg006570 25.926 81 53 3 307 387 1918144 1918365 0.21 38.5 229 | NP_001142246.1 ctg006570 27.160 81 58 1 131 210 1917370 1917612 2.2 35.4 230 | NP_001142246.1 ctg005780 31.944 72 44 2 307 378 189831 189631 0.22 38.5 231 | NP_001142246.1 ctg005580 31.944 72 44 2 307 378 535807 536007 0.27 38.1 232 | NP_001142246.1 ctg005680 31.944 72 44 2 307 378 1796197 1796397 0.28 38.1 233 | NP_001142246.1 ctg003600 30.556 72 45 2 307 378 2148398 2148598 0.29 38.1 234 | NP_001142246.1 ctg005810 31.944 72 44 2 307 378 88885 89085 0.30 38.1 235 | NP_001142246.1 ctg001710 30.556 72 45 2 307 378 1457542 1457742 0.32 38.1 236 | NP_001142246.1 ctg000930 30.556 72 45 2 307 378 967510 967710 0.33 38.1 237 | NP_001142246.1 ctg004730 29.167 72 46 2 307 378 1110238 1110038 0.42 37.7 238 | NP_001142246.1 ctg003490 25.926 81 53 3 307 387 2247758 2247537 0.44 37.7 239 | NP_001142246.1 ctg003490 26.087 69 51 0 131 199 2248533 2248327 5.3 34.3 240 | NP_001142246.1 ctg005840 25.926 81 53 3 307 387 113974 114195 0.50 37.4 241 | NP_001142246.1 ctg005840 26.087 69 51 0 131 199 113199 113405 5.3 34.3 242 | NP_001142246.1 ctg005670 24.074 270 162 10 142 378 1329476 1330255 0.57 37.4 243 | NP_001142246.1 ctg001660 24.138 87 55 2 307 391 10084353 10084120 0.62 37.0 244 | NP_001142246.1 ctg003270 29.730 74 43 2 307 378 8721457 8721657 1.2 36.2 245 | NP_001142246.1 ctg000360 26.582 79 51 3 313 391 2183120 2182905 1.8 35.8 246 | NP_001142246.1 ctg001390 23.529 85 58 2 307 391 23848653 23848420 2.8 35.0 247 | NP_001267879.1 ctg002050 87.866 239 29 0 61 299 7876034 7875318 1.28e-154 423 248 | NP_001267879.1 ctg002050 86.517 89 12 0 299 387 7875321 7875055 1.28e-154 146 249 | NP_001267879.1 ctg002050 83.607 61 10 0 1 61 7876905 7876723 9.59e-26 114 250 | NP_001267879.1 ctg006430 87.866 239 29 0 61 299 4896690 4895974 2.02e-154 423 251 | NP_001267879.1 ctg006430 86.517 89 12 0 299 387 4895977 4895711 2.02e-154 146 252 | NP_001267879.1 ctg006430 83.607 61 10 0 1 61 4898654 4898472 3.36e-26 115 253 | NP_001267879.1 ctg002560 84.862 218 33 0 170 387 314196 314849 4.62e-151 350 254 | NP_001267879.1 ctg002560 91.509 106 9 0 61 166 313888 314205 4.62e-151 208 255 | NP_001267879.1 ctg002560 83.607 61 10 0 1 61 311923 312105 3.52e-26 115 256 | NP_001267879.1 ctg000920 64.759 332 117 0 56 387 8570996 8571991 1.75e-136 422 257 | NP_001267879.1 ctg000920 63.158 57 21 0 1 57 8570760 8570930 1.75e-136 87.4 258 | NP_001267879.1 ctg003400 43.598 328 182 2 63 388 3061487 3060507 4.34e-72 249 259 | NP_001267879.1 ctg000510 37.970 266 134 2 15 250 7158034 7157240 4.00e-57 149 260 | NP_001267879.1 ctg000510 38.028 142 85 2 246 387 7157181 7156765 4.00e-57 95.9 261 | NP_001267879.1 ctg003630 36.364 44 28 0 265 308 10355374 10355505 5.29e-06 41.6 262 | NP_001267879.1 ctg003630 33.333 42 27 1 335 376 10355532 10355654 5.29e-06 31.2 263 | NP_001267879.1 ctg005350 61.538 39 15 0 148 186 4688485 4688601 4.08e-04 47.4 264 | NP_001267879.1 ctg001730 26.437 261 143 10 150 374 1423958 1424701 0.001 45.4 265 | NP_001267879.1 ctg001730 29.808 104 60 4 274 374 9235957 9235676 2.5 35.0 266 | NP_001267879.1 ctg001730 30.864 81 49 3 303 383 8690977 8690756 8.8 33.5 267 | NP_001267879.1 ctg003440 26.054 261 144 10 150 374 2769425 2770168 0.019 42.0 268 | NP_001267879.1 ctg003440 30.769 104 59 5 274 374 7073212 7072931 2.4 35.0 269 | NP_001267879.1 ctg005830 26.054 261 144 10 150 374 987864 987121 0.039 40.8 270 | NP_001267879.1 ctg000290 26.054 261 144 10 150 374 9208006 9207263 0.053 40.4 271 | NP_001267879.1 ctg000290 26.054 261 144 10 150 374 9197931 9197188 0.053 40.4 272 | NP_001267879.1 ctg000290 31.507 73 48 1 138 210 2987571 2987783 7.4 33.5 273 | NP_001267879.1 ctg004420 34.483 87 48 3 303 388 1149346 1149582 0.34 37.7 274 | NP_001267879.1 ctg004420 31.818 88 53 2 128 215 1148750 1148992 2.4 35.0 275 | NP_001267879.1 ctg001390 32.394 71 38 2 108 171 3127324 3127527 0.38 37.7 276 | NP_001267879.1 ctg006570 28.000 75 53 1 119 193 1917349 1917570 2.3 35.4 277 | NP_001267879.1 ctg006570 30.864 81 49 3 303 383 1918144 1918365 2.6 35.0 278 | NP_001267879.1 ctg005670 29.808 104 60 4 274 374 1329974 1330255 2.5 35.0 279 | NP_001267879.1 ctg000930 24.514 257 153 7 150 374 966967 967710 3.5 34.7 280 | NP_001267879.1 ctg003150 28.846 104 61 4 274 374 4064427 4064146 3.7 34.7 281 | NP_001267879.1 ctg006640 30.233 86 51 3 303 387 3123841 3124074 3.8 34.7 282 | NP_001267879.1 ctg003600 34.247 73 41 2 303 374 2148398 2148598 4.7 34.3 283 | NP_001267879.1 ctg003270 24.125 257 154 7 150 374 8720914 8721657 5.0 34.3 284 | NP_001267879.1 ctg005840 26.667 75 54 1 119 193 113178 113399 5.3 34.3 285 | NP_001267879.1 ctg003490 26.667 75 54 1 119 193 2248554 2248333 5.3 34.3 286 | NP_001267879.1 ctg003290 36.066 61 37 1 150 210 2081519 2081343 5.4 33.9 287 | NP_001267879.1 ctg005580 29.808 104 60 4 274 374 535726 536007 5.5 33.9 288 | NP_001267879.1 ctg004770 32.877 73 42 2 303 374 5837464 5837664 7.8 33.5 289 | NP_001267879.1 ctg000360 31.507 73 48 1 138 210 2184019 2183807 9.0 33.5 290 | NP_001267879.1 ctg005780 32.877 73 42 2 303 374 189831 189631 9.9 33.1 291 | NP_001275352.1 ctg002050 89.540 239 25 0 61 299 7876034 7875318 3.43e-159 454 292 | NP_001275352.1 ctg002050 86.517 89 12 0 299 387 7875321 7875055 3.43e-159 131 293 | NP_001275352.1 ctg002050 88.333 60 7 0 1 60 7876905 7876726 1.05e-26 117 294 | NP_001275352.1 ctg006430 89.121 239 26 0 61 299 4896690 4895974 7.08e-159 453 295 | NP_001275352.1 ctg006430 86.517 89 12 0 299 387 4895977 4895711 7.08e-159 131 296 | NP_001275352.1 ctg006430 88.333 60 7 0 1 60 4898654 4898475 1.82e-27 119 297 | NP_001275352.1 ctg002560 85.780 218 31 0 170 387 314196 314849 3.70e-155 362 298 | NP_001275352.1 ctg002560 93.333 105 7 0 61 165 313888 314202 3.70e-155 210 299 | NP_001275352.1 ctg002560 88.333 60 7 0 1 60 311923 312102 1.85e-27 119 300 | NP_001275352.1 ctg000920 65.269 334 116 0 56 389 8570996 8571997 3.57e-143 443 301 | NP_001275352.1 ctg000920 63.158 57 21 0 1 57 8570760 8570930 3.57e-143 88.6 302 | NP_001275352.1 ctg000920 18.800 250 163 6 137 349 12561792 12561052 0.004 43.9 303 | NP_001275352.1 ctg003400 43.425 327 182 2 63 387 3061487 3060510 2.65e-78 267 304 | NP_001275352.1 ctg003400 37.288 59 36 1 6 64 3061985 3061812 0.045 40.8 305 | NP_001275352.1 ctg000510 38.951 267 132 2 15 251 7158034 7157237 1.53e-67 185 306 | NP_001275352.1 ctg000510 37.063 143 87 1 246 388 7157181 7156762 1.53e-67 95.1 307 | NP_001275352.1 ctg001730 26.957 230 126 8 150 344 1423958 1424626 2.86e-07 57.4 308 | NP_001275352.1 ctg001730 24.464 233 132 7 150 346 9236419 9235745 0.002 45.4 309 | NP_001275352.1 ctg001730 28.270 237 120 12 150 346 8691526 8690846 0.16 38.9 310 | NP_001275352.1 ctg000290 26.522 230 127 8 150 344 9208006 9207338 4.72e-06 53.5 311 | NP_001275352.1 ctg000290 26.522 230 127 8 150 344 9197931 9197263 5.91e-06 53.1 312 | NP_001275352.1 ctg000290 23.151 311 187 12 71 346 7923452 7924333 0.001 45.8 313 | NP_001275352.1 ctg000290 28.090 89 62 1 138 226 2987571 2987831 0.32 38.1 314 | NP_001275352.1 ctg003440 26.522 230 127 8 150 344 2769425 2770093 6.50e-06 53.1 315 | NP_001275352.1 ctg003440 23.457 243 142 7 138 344 7073710 7073006 0.002 45.4 316 | NP_001275352.1 ctg005830 26.522 230 127 8 150 344 987864 987196 7.34e-06 52.8 317 | NP_001275352.1 ctg005830 24.116 311 184 11 71 346 107528 108409 5.55e-04 47.0 318 | NP_001275352.1 ctg003630 51.282 39 18 1 211 248 10355045 10355161 2.78e-04 36.6 319 | NP_001275352.1 ctg003630 48.276 29 15 0 178 206 10354948 10355034 2.78e-04 30.4 320 | NP_001275352.1 ctg003630 36.364 44 28 0 265 308 10355374 10355505 0.032 41.2 321 | NP_001275352.1 ctg005670 24.454 229 137 6 150 346 1329512 1330186 7.98e-04 46.2 322 | NP_001275352.1 ctg005810 24.116 311 184 11 71 346 88135 89016 0.001 45.8 323 | NP_001275352.1 ctg001660 18.800 250 163 6 137 349 10084953 10084213 0.001 45.8 324 | NP_001275352.1 ctg005580 22.876 306 194 9 71 346 535057 535938 0.001 45.8 325 | NP_001275352.1 ctg005680 23.473 311 186 12 71 346 1795447 1796328 0.003 44.7 326 | NP_001275352.1 ctg005350 54.762 42 19 0 145 186 4688476 4688601 0.003 44.7 327 | NP_001275352.1 ctg006640 21.162 241 155 7 137 349 3123280 3123981 0.014 42.4 328 | NP_001275352.1 ctg004420 43.182 44 25 0 303 346 1149346 1149477 0.031 41.2 329 | NP_001275352.1 ctg004420 29.293 99 63 2 128 226 1148750 1149025 0.64 37.0 330 | NP_001275352.1 ctg006570 25.000 132 87 3 104 226 1917277 1917663 0.034 41.2 331 | NP_001275352.1 ctg006570 34.091 44 29 0 303 346 1918144 1918275 0.62 37.0 332 | NP_001275352.1 ctg001390 20.635 252 148 8 143 349 23849247 23848513 0.076 40.0 333 | NP_001275352.1 ctg001390 30.137 73 41 2 108 173 3127324 3127533 3.6 34.7 334 | NP_001275352.1 ctg005840 23.664 131 90 2 104 226 113106 113492 0.18 38.9 335 | NP_001275352.1 ctg005840 34.091 44 29 0 303 346 113974 114105 0.91 36.6 336 | NP_001275352.1 ctg003490 23.664 131 90 2 104 226 2248626 2248240 0.18 38.9 337 | NP_001275352.1 ctg003490 34.091 44 29 0 303 346 2247758 2247627 0.72 37.0 338 | NP_001275352.1 ctg003270 23.605 233 134 8 150 346 8720914 8721588 0.20 38.5 339 | NP_001275352.1 ctg004770 38.636 44 27 0 303 346 5850303 5850434 0.42 37.7 340 | NP_001275352.1 ctg004770 38.636 44 27 0 303 346 5837464 5837595 0.94 36.6 341 | NP_001275352.1 ctg000360 28.090 89 62 1 138 226 2184019 2183759 0.56 37.4 342 | NP_001275352.1 ctg000930 24.348 230 136 7 150 346 966967 967641 0.56 37.4 343 | NP_001275352.1 ctg004040 54.839 31 10 1 229 259 845152 845072 1.1 32.0 344 | NP_001275352.1 ctg004040 48.148 27 10 1 205 231 845211 845143 1.1 22.3 345 | NP_001275352.1 ctg001710 36.364 44 28 0 303 346 1457542 1457673 1.5 35.8 346 | NP_001275352.1 ctg005780 36.364 44 28 0 303 346 189831 189700 1.5 35.8 347 | NP_001275352.1 ctg005780 25.641 156 104 5 71 226 190582 190151 2.3 35.4 348 | NP_001275352.1 ctg004730 34.091 44 29 0 303 346 1110238 1110107 2.6 35.0 349 | NP_001275352.1 ctg003600 36.364 44 28 0 303 346 2148398 2148529 2.8 35.0 350 | NP_001275352.1 ctg003150 35.714 42 27 0 303 344 4064346 4064221 3.0 35.0 351 | AAB36038.1 ctg006430 92.887 239 17 0 61 299 4896690 4895974 1.45e-158 433 352 | AAB36038.1 ctg006430 88.764 89 10 0 299 387 4895977 4895711 1.45e-158 150 353 | AAB36038.1 ctg006430 81.967 61 11 0 1 61 4898654 4898472 3.17e-26 115 354 | AAB36038.1 ctg002050 93.305 239 16 0 61 299 7876034 7875318 1.47e-158 434 355 | AAB36038.1 ctg002050 88.764 89 10 0 299 387 7875321 7875055 1.47e-158 149 356 | AAB36038.1 ctg002050 80.328 61 12 0 1 61 7876905 7876723 3.78e-25 112 357 | AAB36038.1 ctg002560 88.532 218 25 0 170 387 314196 314849 1.17e-154 353 358 | AAB36038.1 ctg002560 97.170 106 3 0 61 166 313888 314205 1.17e-154 217 359 | AAB36038.1 ctg002560 81.967 61 11 0 1 61 311923 312105 3.41e-26 115 360 | AAB36038.1 ctg000920 66.168 334 113 0 56 389 8570996 8571997 6.27e-140 435 361 | AAB36038.1 ctg000920 59.649 57 23 0 1 57 8570760 8570930 6.27e-140 86.7 362 | AAB36038.1 ctg000920 21.260 254 152 8 137 349 12561792 12561052 0.14 39.3 363 | AAB36038.1 ctg003400 44.343 327 179 2 63 387 3061487 3060510 1.23e-72 251 364 | AAB36038.1 ctg000510 38.662 269 130 3 15 251 7158034 7157237 1.29e-62 152 365 | AAB36038.1 ctg000510 38.462 143 85 1 246 388 7157181 7156762 1.29e-62 111 366 | AAB36038.1 ctg003630 36.364 44 28 0 265 308 10355374 10355505 4.61e-05 42.7 367 | AAB36038.1 ctg003630 30.952 42 28 1 335 376 10355532 10355654 4.61e-05 26.9 368 | AAB36038.1 ctg005350 53.846 39 18 0 148 186 4688485 4688601 0.007 43.1 369 | AAB36038.1 ctg001730 24.904 261 147 10 150 374 1423958 1424701 0.016 42.0 370 | AAB36038.1 ctg001730 25.362 138 94 4 240 374 9236071 9235676 0.047 40.8 371 | AAB36038.1 ctg001730 29.167 120 63 5 267 383 8691058 8690756 0.43 37.7 372 | AAB36038.1 ctg003440 26.812 138 92 5 240 374 7073326 7072931 0.021 42.0 373 | AAB36038.1 ctg003440 24.242 231 131 8 150 344 2769425 2770093 0.37 37.7 374 | AAB36038.1 ctg004420 31.395 86 52 3 303 388 1149346 1149582 0.041 40.8 375 | AAB36038.1 ctg001660 21.260 254 152 8 137 349 10084953 10084213 0.084 40.0 376 | AAB36038.1 ctg005670 24.638 138 95 4 240 374 1329860 1330255 0.10 39.7 377 | AAB36038.1 ctg006640 22.363 237 157 7 137 349 3123280 3123981 0.13 39.3 378 | AAB36038.1 ctg005830 29.897 97 60 4 280 374 987393 987121 0.24 38.5 379 | AAB36038.1 ctg005830 29.167 72 46 1 303 374 108278 108478 2.9 35.0 380 | AAB36038.1 ctg000290 29.897 97 60 4 280 374 9207535 9207263 0.27 38.1 381 | AAB36038.1 ctg000290 29.897 97 60 4 280 374 9197460 9197188 0.27 38.1 382 | AAB36038.1 ctg000290 22.426 272 168 9 150 389 7923659 7924441 0.97 36.6 383 | AAB36038.1 ctg001440 26.966 89 49 4 101 189 289483 289701 0.29 38.1 384 | AAB36038.1 ctg001390 21.825 252 145 8 143 349 23849247 23848513 0.82 36.6 385 | AAB36038.1 ctg001390 31.507 73 40 2 108 173 3127324 3127533 1.4 35.8 386 | AAB36038.1 ctg005780 26.437 87 57 2 303 389 189831 189592 0.84 36.6 387 | AAB36038.1 ctg006570 25.926 81 53 2 303 383 1918144 1918365 1.2 36.2 388 | AAB36038.1 ctg006570 25.510 98 65 1 104 193 1917277 1917570 1.4 35.8 389 | AAB36038.1 ctg004770 29.167 72 46 1 303 374 5850303 5850503 1.7 35.8 390 | AAB36038.1 ctg004770 29.167 72 46 1 303 374 5837464 5837664 2.6 35.0 391 | AAB36038.1 ctg003490 34.091 44 29 0 303 346 2247758 2247627 1.8 35.4 392 | AAB36038.1 ctg003490 24.490 98 66 1 104 193 2248626 2248333 3.4 34.7 393 | AAB36038.1 ctg003150 29.167 72 46 1 303 374 4064346 4064146 2.0 35.4 394 | AAB36038.1 ctg001710 29.167 72 46 1 303 374 1457542 1457742 2.1 35.4 395 | AAB36038.1 ctg005840 34.091 44 29 0 303 346 113974 114105 2.2 35.4 396 | AAB36038.1 ctg005840 24.490 98 66 1 104 193 113106 113399 3.4 34.7 397 | AAB36038.1 ctg005810 29.167 72 46 1 303 374 88885 89085 2.8 35.0 398 | AAB36038.1 ctg005580 29.167 72 46 1 303 374 535807 536007 2.9 35.0 399 | AAB36038.1 ctg005680 29.167 72 46 1 303 374 1796197 1796397 3.2 34.7 400 | AAB36038.1 ctg004730 27.778 72 47 1 303 374 1110238 1110038 3.4 34.7 401 | AAB36038.1 ctg003600 29.167 72 46 1 303 374 2148398 2148598 4.1 34.3 402 | AAB36038.1 ctg000930 29.167 72 46 1 303 374 967510 967710 4.1 34.3 403 | AAB36038.1 ctg003270 24.638 138 95 4 240 374 8721262 8721657 4.3 34.3 404 | AAB36038.1 ctg000340 41.026 39 23 0 297 335 1706461 1706345 6.4 33.9 405 | AAB36038.1 ctg003290 34.426 61 38 1 150 210 2081519 2081343 9.8 33.1 406 | AGE84303.1 ctg002050 87.866 239 29 0 61 299 7876034 7875318 1.32e-159 426 407 | AGE84303.1 ctg002050 83.146 89 15 0 299 387 7875321 7875055 1.32e-159 161 408 | AGE84303.1 ctg002050 85.000 60 9 0 1 60 7876905 7876726 7.23e-27 117 409 | AGE84303.1 ctg006430 87.866 239 29 0 61 299 4896690 4895974 4.12e-159 424 410 | AGE84303.1 ctg006430 83.146 89 15 0 299 387 4895977 4895711 4.12e-159 161 411 | AGE84303.1 ctg006430 85.000 60 9 0 1 60 4898654 4898475 1.59e-27 119 412 | AGE84303.1 ctg002560 83.486 218 36 0 170 387 314196 314849 1.56e-155 365 413 | AGE84303.1 ctg002560 91.509 106 9 0 61 166 313888 314205 1.56e-155 208 414 | AGE84303.1 ctg002560 85.000 60 9 0 1 60 311923 312102 1.69e-27 119 415 | AGE84303.1 ctg000920 64.759 332 117 0 56 387 8570996 8571991 1.41e-145 452 416 | AGE84303.1 ctg000920 63.158 57 21 0 1 57 8570760 8570930 1.41e-145 87.8 417 | AGE84303.1 ctg000920 20.275 291 179 9 137 387 12561792 12560959 0.044 40.8 418 | AGE84303.1 ctg003400 44.343 327 179 2 63 387 3061487 3060510 9.41e-78 265 419 | AGE84303.1 ctg000510 38.346 266 133 2 15 250 7158034 7157240 9.50e-62 151 420 | AGE84303.1 ctg000510 36.364 143 88 1 246 388 7157181 7156762 9.50e-62 108 421 | AGE84303.1 ctg001730 25.954 262 143 10 150 374 1423958 1424701 1.94e-06 54.7 422 | AGE84303.1 ctg001730 25.869 259 147 9 150 374 9236419 9235676 4.63e-04 47.0 423 | AGE84303.1 ctg001730 34.940 83 43 4 303 383 8690977 8690756 0.004 44.3 424 | AGE84303.1 ctg001730 32.836 67 38 2 309 374 4145334 4145152 0.94 36.6 425 | AGE84303.1 ctg003440 25.954 262 143 10 150 374 2769425 2770168 6.56e-06 53.1 426 | AGE84303.1 ctg003440 24.710 259 150 9 150 374 7073674 7072931 0.001 45.4 427 | AGE84303.1 ctg003440 31.343 67 39 2 309 374 4515878 4515696 1.5 35.8 428 | AGE84303.1 ctg003630 36.364 44 28 0 265 308 10355374 10355505 2.18e-05 42.0 429 | AGE84303.1 ctg003630 30.952 42 28 1 335 376 10355532 10355654 2.18e-05 28.9 430 | AGE84303.1 ctg005830 25.573 262 144 10 150 374 987864 987121 3.40e-05 50.8 431 | AGE84303.1 ctg005830 34.247 73 41 2 303 374 108278 108478 0.024 41.6 432 | AGE84303.1 ctg004420 34.483 87 48 3 303 388 1149346 1149582 6.46e-05 50.1 433 | AGE84303.1 ctg004420 30.682 88 54 2 128 215 1148750 1148992 5.5 33.9 434 | AGE84303.1 ctg000290 25.191 262 145 10 150 374 9208006 9207263 7.81e-05 49.7 435 | AGE84303.1 ctg000290 25.191 262 145 10 150 374 9197931 9197188 7.81e-05 49.7 436 | AGE84303.1 ctg000290 30.233 86 51 3 303 387 7924202 7924435 0.020 42.0 437 | AGE84303.1 ctg000290 30.380 79 48 3 309 387 2988447 2988662 0.30 38.1 438 | AGE84303.1 ctg005670 25.483 259 148 9 150 374 1329512 1330255 6.11e-04 46.6 439 | AGE84303.1 ctg006570 30.357 112 66 5 275 383 1918057 1918365 8.93e-04 46.2 440 | AGE84303.1 ctg006570 31.343 67 46 0 127 193 1917370 1917570 0.25 38.5 441 | AGE84303.1 ctg005350 56.410 39 17 0 148 186 4688485 4688601 0.001 45.8 442 | AGE84303.1 ctg004770 35.616 73 40 2 303 374 5850303 5850503 0.002 45.1 443 | AGE84303.1 ctg004770 30.588 85 52 3 303 387 5837464 5837697 0.051 40.4 444 | AGE84303.1 ctg005840 29.464 112 67 5 275 383 113887 114195 0.003 44.3 445 | AGE84303.1 ctg005840 29.851 67 47 0 127 193 113199 113399 0.55 37.4 446 | AGE84303.1 ctg003490 29.464 112 67 5 275 383 2247845 2247537 0.004 43.9 447 | AGE84303.1 ctg003490 29.851 67 47 0 127 193 2248533 2248333 0.56 37.4 448 | AGE84303.1 ctg001710 35.616 73 40 2 303 374 1457542 1457742 0.007 43.5 449 | AGE84303.1 ctg006640 27.907 86 53 3 303 387 3123841 3124074 0.010 42.7 450 | AGE84303.1 ctg005780 34.247 73 41 2 303 374 189831 189631 0.014 42.4 451 | AGE84303.1 ctg005780 33.846 65 35 2 309 368 7353737 7353922 1.7 35.8 452 | AGE84303.1 ctg005580 34.247 73 41 2 303 374 535807 536007 0.024 41.6 453 | AGE84303.1 ctg005680 34.247 73 41 2 303 374 1796197 1796397 0.024 41.6 454 | AGE84303.1 ctg005680 26.496 117 80 4 240 352 5266649 5266993 8.4 33.5 455 | AGE84303.1 ctg005810 34.247 73 41 2 303 374 88885 89085 0.024 41.6 456 | AGE84303.1 ctg003150 34.722 72 42 2 303 374 4064346 4064146 0.034 41.2 457 | AGE84303.1 ctg004730 32.877 73 42 2 303 374 1110238 1110038 0.036 41.2 458 | AGE84303.1 ctg000930 34.247 73 41 2 303 374 967510 967710 0.037 41.2 459 | AGE84303.1 ctg003600 34.247 73 41 2 303 374 2148398 2148598 0.037 40.8 460 | AGE84303.1 ctg006420 35.385 65 34 2 309 368 801157 800972 0.050 40.4 461 | AGE84303.1 ctg001660 19.679 249 156 7 137 346 10084953 10084222 0.063 40.4 462 | AGE84303.1 ctg003270 26.087 138 93 4 240 374 8721262 8721657 0.11 39.7 463 | AGE84303.1 ctg000360 30.380 79 48 3 309 387 2183120 2182905 0.22 38.5 464 | AGE84303.1 ctg005380 34.286 70 39 2 306 374 63450 63641 0.29 38.1 465 | AGE84303.1 ctg001390 32.394 71 38 2 108 171 3127324 3127527 0.43 37.7 466 | AGE84303.1 ctg001390 25.581 86 55 2 303 387 23848653 23848420 0.44 37.4 467 | AGE84303.1 ctg001970 33.846 65 35 2 309 368 3855633 3855818 0.60 37.0 468 | AGE84303.1 ctg002240 35.593 59 36 1 78 136 1274676 1274846 5.4 33.9 469 | AAF23575.1 ctg002050 86.667 240 31 1 67 306 7876034 7875318 1.11e-163 432 470 | AAF23575.1 ctg002050 86.813 91 12 0 306 396 7875321 7875049 1.11e-163 168 471 | AAF23575.1 ctg002050 77.586 58 13 0 9 66 7876899 7876726 3.39e-21 100 472 | AAF23575.1 ctg006430 86.667 240 31 1 67 306 4896690 4895974 2.05e-163 431 473 | AAF23575.1 ctg006430 86.813 91 12 0 306 396 4895977 4895705 2.05e-163 168 474 | AAF23575.1 ctg006430 75.862 58 14 0 9 66 4898648 4898475 1.12e-20 99.0 475 | AAF23575.1 ctg002560 85.068 221 32 1 176 396 314196 314855 4.28e-160 385 476 | AAF23575.1 ctg002560 88.679 106 12 0 67 172 313888 314205 4.28e-160 203 477 | AAF23575.1 ctg002560 75.862 58 14 0 9 66 311929 312102 1.06e-20 99.0 478 | AAF23575.1 ctg000920 64.371 334 118 1 62 395 8570996 8571994 5.80e-145 459 479 | AAF23575.1 ctg000920 58.182 55 23 0 9 63 8570766 8570930 3.51e-13 76.3 480 | AAF23575.1 ctg000920 20.312 256 159 7 143 359 12561792 12561043 2.27e-05 51.2 481 | AAF23575.1 ctg003400 42.073 328 186 3 69 394 3061487 3060510 1.07e-79 271 482 | AAF23575.1 ctg000510 35.075 268 140 4 21 257 7158034 7157240 1.49e-62 162 483 | AAF23575.1 ctg000510 35.211 142 89 1 253 394 7157181 7156765 1.49e-62 101 484 | AAF23575.1 ctg004420 31.765 85 51 3 310 394 1149346 1149579 1.80e-08 43.1 485 | AAF23575.1 ctg004420 25.581 172 110 5 134 297 1148750 1149235 1.80e-08 38.5 486 | AAF23575.1 ctg001730 25.573 262 145 12 156 381 1423958 1424701 4.16e-06 53.9 487 | AAF23575.1 ctg001730 27.372 274 143 13 156 390 8691526 8690756 0.001 45.4 488 | AAF23575.1 ctg001730 23.793 290 176 11 125 381 9236509 9235676 0.002 45.4 489 | AAF23575.1 ctg001660 20.312 256 159 7 143 359 10084953 10084204 3.16e-05 50.8 490 | AAF23575.1 ctg003630 22.634 243 138 10 104 315 10354834 10355505 4.77e-05 41.2 491 | AAF23575.1 ctg003630 30.952 42 28 1 342 383 10355532 10355654 4.77e-05 28.5 492 | AAF23575.1 ctg003440 24.046 262 149 11 156 381 2769425 2770168 5.53e-05 50.1 493 | AAF23575.1 ctg003440 23.793 290 176 11 125 381 7073764 7072931 0.004 44.3 494 | AAF23575.1 ctg001390 20.930 258 159 7 143 359 23849265 23848504 6.87e-05 49.7 495 | AAF23575.1 ctg001390 29.213 89 49 3 114 195 3127324 3127569 0.52 37.4 496 | AAF23575.1 ctg000290 24.809 262 147 11 156 381 9197931 9197188 7.96e-05 49.7 497 | AAF23575.1 ctg000290 25.191 262 146 12 156 381 9208006 9207263 9.22e-05 49.3 498 | AAF23575.1 ctg000290 22.780 259 146 10 169 390 7923698 7924423 0.001 46.2 499 | AAF23575.1 ctg000290 27.103 107 75 2 126 232 2987520 2987831 0.92 36.6 500 | AAF23575.1 ctg000290 29.114 79 49 3 316 394 2988447 2988662 1.6 35.8 501 | AAF23575.1 ctg005830 22.814 263 151 9 156 381 987864 987121 8.24e-05 49.7 502 | AAF23575.1 ctg005830 24.800 250 136 10 169 381 107774 108478 0.004 44.3 503 | AAF23575.1 ctg006640 20.939 277 182 9 143 394 3123280 3124074 1.11e-04 49.3 504 | AAF23575.1 ctg005350 56.410 39 17 0 154 192 4688485 4688601 0.001 46.2 505 | AAF23575.1 ctg003270 23.438 256 158 9 156 381 8720914 8721657 0.001 45.8 506 | AAF23575.1 ctg005670 23.793 290 176 11 125 381 1329422 1330255 0.003 44.7 507 | AAF23575.1 ctg000930 24.125 257 155 10 156 381 966967 967710 0.010 42.7 508 | AAF23575.1 ctg006570 25.466 161 102 7 233 390 1917928 1918365 0.031 41.2 509 | AAF23575.1 ctg006570 27.723 101 69 2 133 232 1917370 1917663 0.056 40.4 510 | AAF23575.1 ctg005580 22.472 267 147 10 156 381 535264 536007 0.041 40.8 511 | AAF23575.1 ctg005680 23.574 263 149 10 156 381 1795654 1796397 0.052 40.4 512 | AAF23575.1 ctg005680 25.641 117 81 4 247 359 5266649 5266993 8.9 33.5 513 | AAF23575.1 ctg005810 23.221 267 145 11 156 381 88342 89085 0.052 40.4 514 | AAF23575.1 ctg004770 30.631 111 60 5 284 394 5837416 5837697 0.086 40.0 515 | AAF23575.1 ctg004770 33.333 72 43 2 310 381 5850303 5850503 0.21 38.5 516 | AAF23575.1 ctg003600 36.111 72 41 3 310 381 2148398 2148598 0.18 38.9 517 | AAF23575.1 ctg001710 36.111 72 41 3 310 381 1457542 1457742 0.18 38.9 518 | AAF23575.1 ctg005780 34.722 72 42 3 310 381 189831 189631 0.35 37.7 519 | AAF23575.1 ctg004730 33.333 72 43 2 310 381 1110238 1110038 0.39 37.7 520 | AAF23575.1 ctg005840 25.743 101 71 2 133 232 113199 113492 0.42 37.7 521 | AAF23575.1 ctg005840 24.224 161 104 7 233 390 113758 114195 0.55 37.4 522 | AAF23575.1 ctg003490 25.743 101 71 2 133 232 2248533 2248240 0.42 37.7 523 | AAF23575.1 ctg003490 24.224 161 104 7 233 390 2247974 2247537 0.67 37.0 524 | AAF23575.1 ctg000360 29.114 79 49 3 316 394 2183120 2182905 0.93 36.6 525 | AAF23575.1 ctg000360 27.103 107 75 2 126 232 2184070 2183759 1.1 36.2 526 | AAF23575.1 ctg003150 29.787 94 61 3 156 247 4065321 4065049 3.4 34.7 527 | AAF23575.1 ctg003150 31.944 72 44 3 310 381 4064346 4064146 4.3 34.3 528 | AAF23575.1 ctg005380 39.024 41 25 0 313 353 63450 63572 6.4 33.9 529 | AAF23570.1 ctg006430 87.083 240 30 1 67 306 4896690 4895974 7.71e-165 433 530 | AAF23570.1 ctg006430 87.912 91 11 0 306 396 4895977 4895705 7.71e-165 171 531 | AAF23570.1 ctg006430 75.862 58 14 0 9 66 4898648 4898475 1.17e-20 99.0 532 | AAF23570.1 ctg002050 86.250 240 32 1 67 306 7876034 7875318 9.58e-164 429 533 | AAF23570.1 ctg002050 87.912 91 11 0 306 396 7875321 7875049 9.58e-164 171 534 | AAF23570.1 ctg002050 77.586 58 13 0 9 66 7876899 7876726 3.62e-21 100 535 | AAF23570.1 ctg002560 85.520 221 31 1 176 396 314196 314855 2.14e-161 387 536 | AAF23570.1 ctg002560 89.623 106 11 0 67 172 313888 314205 2.14e-161 206 537 | AAF23570.1 ctg002560 75.862 58 14 0 9 66 311929 312102 1.10e-20 99.0 538 | AAF23570.1 ctg000920 64.072 334 119 1 62 395 8570996 8571994 1.45e-144 458 539 | AAF23570.1 ctg000920 58.182 55 23 0 9 63 8570766 8570930 3.57e-13 75.9 540 | AAF23570.1 ctg000920 20.312 256 159 7 143 359 12561792 12561043 1.22e-05 52.4 541 | AAF23570.1 ctg003400 42.683 328 184 3 69 394 3061487 3060510 3.45e-81 276 542 | AAF23570.1 ctg000510 35.448 268 139 4 21 257 7158034 7157240 1.98e-63 164 543 | AAF23570.1 ctg000510 35.211 142 89 1 253 394 7157181 7156765 1.98e-63 102 544 | AAF23570.1 ctg004420 32.941 85 50 3 310 394 1149346 1149579 4.99e-09 45.1 545 | AAF23570.1 ctg004420 25.581 172 110 5 134 297 1148750 1149235 4.99e-09 38.5 546 | AAF23570.1 ctg001730 25.954 262 144 12 156 381 1423958 1424701 8.64e-07 55.8 547 | AAF23570.1 ctg001730 24.138 290 175 11 125 381 9236509 9235676 4.21e-04 47.4 548 | AAF23570.1 ctg001730 27.372 274 143 13 156 390 8691526 8690756 0.001 45.8 549 | AAF23570.1 ctg003440 24.427 262 148 11 156 381 2769425 2770168 1.37e-05 52.0 550 | AAF23570.1 ctg003440 24.138 290 175 11 125 381 7073764 7072931 8.39e-04 46.2 551 | AAF23570.1 ctg001660 20.312 256 159 7 143 359 10084953 10084204 1.65e-05 52.0 552 | AAF23570.1 ctg000290 25.191 262 146 11 156 381 9197931 9197188 1.88e-05 51.6 553 | AAF23570.1 ctg000290 25.573 262 145 12 156 381 9208006 9207263 2.52e-05 51.2 554 | AAF23570.1 ctg000290 22.780 259 146 10 169 390 7923698 7924423 4.36e-04 47.4 555 | AAF23570.1 ctg000290 30.380 79 48 3 316 394 2988447 2988662 0.38 37.7 556 | AAF23570.1 ctg000290 27.103 107 75 2 126 232 2987520 2987831 0.92 36.6 557 | AAF23570.1 ctg005830 23.194 263 150 9 156 381 987864 987121 1.98e-05 51.6 558 | AAF23570.1 ctg005830 22.527 364 220 13 55 381 107462 108478 8.76e-04 46.2 559 | AAF23570.1 ctg001390 20.930 258 159 7 143 359 23849265 23848504 3.78e-05 50.8 560 | AAF23570.1 ctg001390 29.213 89 49 3 114 195 3127324 3127569 0.52 37.4 561 | AAF23570.1 ctg003630 22.634 243 138 10 104 315 10354834 10355505 4.62e-05 41.2 562 | AAF23570.1 ctg003630 30.952 42 28 1 342 383 10355532 10355654 4.62e-05 28.5 563 | AAF23570.1 ctg006640 20.939 277 182 9 143 394 3123280 3124074 7.17e-05 49.7 564 | AAF23570.1 ctg003270 23.438 256 158 9 156 381 8720914 8721657 5.99e-04 47.0 565 | AAF23570.1 ctg005670 24.138 290 175 11 125 381 1329422 1330255 8.18e-04 46.2 566 | AAF23570.1 ctg005350 56.410 39 17 0 154 192 4688485 4688601 0.001 46.2 567 | AAF23570.1 ctg005580 20.661 363 228 10 55 381 534991 536007 0.006 43.5 568 | AAF23570.1 ctg000930 24.125 257 155 10 156 381 966967 967710 0.006 43.5 569 | AAF23570.1 ctg006570 26.087 161 101 7 233 390 1917928 1918365 0.007 43.5 570 | AAF23570.1 ctg006570 27.723 101 69 2 133 232 1917370 1917663 0.055 40.4 571 | AAF23570.1 ctg005810 21.739 368 218 14 55 381 88069 89085 0.008 43.1 572 | AAF23570.1 ctg005680 23.574 263 149 10 156 381 1795654 1796397 0.027 41.6 573 | AAF23570.1 ctg005680 26.496 117 80 4 247 359 5266649 5266993 2.0 35.4 574 | AAF23570.1 ctg004770 30.631 111 60 5 284 394 5837416 5837697 0.053 40.4 575 | AAF23570.1 ctg004770 33.333 72 43 2 310 381 5850303 5850503 0.13 39.3 576 | AAF23570.1 ctg003600 36.111 72 41 3 310 381 2148398 2148598 0.10 39.7 577 | AAF23570.1 ctg001710 36.111 72 41 3 310 381 1457542 1457742 0.11 39.7 578 | AAF23570.1 ctg005840 24.845 161 103 7 233 390 113758 114195 0.12 39.3 579 | AAF23570.1 ctg005840 25.743 101 71 2 133 232 113199 113492 0.38 37.7 580 | AAF23570.1 ctg003490 24.845 161 103 7 233 390 2247974 2247537 0.16 38.9 581 | AAF23570.1 ctg003490 25.743 101 71 2 133 232 2248533 2248240 0.38 37.7 582 | AAF23570.1 ctg000360 30.380 79 48 3 316 394 2183120 2182905 0.21 38.5 583 | AAF23570.1 ctg000360 27.103 107 75 2 126 232 2184070 2183759 1.0 36.2 584 | AAF23570.1 ctg005780 34.722 72 42 3 310 381 189831 189631 0.22 38.5 585 | AAF23570.1 ctg004730 33.333 72 43 2 310 381 1110238 1110038 0.23 38.5 586 | AAF23570.1 ctg003150 33.333 72 43 3 310 381 4064346 4064146 1.1 36.2 587 | AAF23570.1 ctg003150 29.787 94 61 3 156 247 4065321 4065049 3.5 34.7 588 | AAF23570.1 ctg005380 39.024 41 25 0 313 353 63450 63572 3.9 34.7 589 | AAF23559.1 ctg002050 87.083 240 30 1 62 301 7876034 7875318 9.94e-165 433 590 | AAF23559.1 ctg002050 89.011 91 10 0 301 391 7875321 7875049 9.94e-165 171 591 | AAF23559.1 ctg002050 75.862 58 14 0 4 61 7876899 7876726 9.59e-21 99.0 592 | AAF23559.1 ctg006430 87.083 240 30 1 62 301 4896690 4895974 1.78e-164 432 593 | AAF23559.1 ctg006430 89.011 91 10 0 301 391 4895977 4895705 1.78e-164 171 594 | AAF23559.1 ctg006430 74.138 58 15 0 4 61 4898648 4898475 2.19e-20 98.2 595 | AAF23559.1 ctg002560 86.425 221 29 1 171 391 314196 314855 9.55e-161 390 596 | AAF23559.1 ctg002560 88.679 106 12 0 62 167 313888 314205 9.55e-161 201 597 | AAF23559.1 ctg002560 74.138 58 15 0 4 61 311929 312102 2.07e-20 98.2 598 | AAF23559.1 ctg000920 64.970 334 116 1 57 390 8570996 8571994 2.64e-145 460 599 | AAF23559.1 ctg000920 60.000 55 22 0 4 58 8570766 8570930 1.20e-13 77.4 600 | AAF23559.1 ctg000920 19.178 292 182 9 138 389 12561792 12560959 1.60e-04 48.5 601 | AAF23559.1 ctg003400 42.378 328 185 3 64 389 3061487 3060510 2.48e-80 273 602 | AAF23559.1 ctg000510 34.701 268 141 4 16 252 7158034 7157240 1.22e-62 157 603 | AAF23559.1 ctg000510 35.915 142 88 1 248 389 7157181 7156765 1.22e-62 106 604 | AAF23559.1 ctg004420 32.941 85 50 3 305 389 1149346 1149579 1.60e-09 45.4 605 | AAF23559.1 ctg004420 26.163 172 109 5 129 292 1148750 1149235 1.60e-09 39.7 606 | AAF23559.1 ctg001730 24.903 257 153 10 151 376 1423958 1424701 5.34e-08 59.7 607 | AAF23559.1 ctg001730 24.483 290 174 11 120 376 9236509 9235676 5.59e-05 50.1 608 | AAF23559.1 ctg001730 25.830 271 151 12 151 385 8691526 8690756 0.001 46.2 609 | AAF23559.1 ctg005830 23.954 263 148 9 151 376 987864 987121 5.34e-07 56.6 610 | AAF23559.1 ctg005830 24.715 263 146 10 151 376 107735 108478 0.001 46.2 611 | AAF23559.1 ctg003440 23.346 257 157 9 151 376 2769425 2770168 6.41e-07 56.2 612 | AAF23559.1 ctg003440 24.138 290 175 11 120 376 7073764 7072931 1.28e-04 48.9 613 | AAF23559.1 ctg000290 23.574 263 149 9 151 376 9197931 9197188 2.24e-06 54.7 614 | AAF23559.1 ctg000290 23.574 263 149 9 151 376 9208006 9207263 3.01e-06 54.3 615 | AAF23559.1 ctg000290 22.794 272 156 10 151 385 7923659 7924423 1.01e-04 49.3 616 | AAF23559.1 ctg000290 28.037 107 74 2 121 227 2987520 2987831 0.25 38.5 617 | AAF23559.1 ctg000290 30.380 79 48 3 311 389 2988447 2988662 0.55 37.4 618 | AAF23559.1 ctg003630 22.634 243 138 10 99 310 10354834 10355505 3.42e-06 43.5 619 | AAF23559.1 ctg003630 34.043 47 20 2 337 378 10355532 10355654 3.42e-06 30.0 620 | AAF23559.1 ctg006640 21.300 277 181 9 138 389 3123280 3124074 5.68e-05 50.1 621 | AAF23559.1 ctg005670 24.483 290 174 11 120 376 1329422 1330255 6.30e-05 50.1 622 | AAF23559.1 ctg001660 18.771 293 182 9 138 389 10084953 10084120 2.58e-04 48.1 623 | AAF23559.1 ctg003270 23.438 256 158 10 151 376 8720914 8721657 0.001 46.2 624 | AAF23559.1 ctg000930 23.828 256 157 10 151 376 966967 967710 0.003 44.7 625 | AAF23559.1 ctg001390 20.543 258 159 8 144 359 23849247 23848486 0.003 44.3 626 | AAF23559.1 ctg001390 29.213 89 49 3 109 190 3127324 3127569 1.3 35.8 627 | AAF23559.1 ctg005680 22.814 263 151 9 151 376 1795654 1796397 0.008 43.1 628 | AAF23559.1 ctg005810 22.814 263 151 9 151 376 88342 89085 0.009 43.1 629 | AAF23559.1 ctg006570 25.466 161 102 7 228 385 1917928 1918365 0.012 42.7 630 | AAF23559.1 ctg006570 28.713 101 68 2 128 227 1917370 1917663 0.016 42.4 631 | AAF23559.1 ctg005580 22.137 262 154 7 151 376 535264 536007 0.012 42.7 632 | AAF23559.1 ctg005350 53.846 39 18 0 149 187 4688485 4688601 0.016 42.4 633 | AAF23559.1 ctg005840 24.845 161 103 7 228 385 113758 114195 0.073 40.0 634 | AAF23559.1 ctg005840 26.733 101 70 2 128 227 113199 113492 0.12 39.3 635 | AAF23559.1 ctg003490 24.845 161 103 7 228 385 2247974 2247537 0.075 40.0 636 | AAF23559.1 ctg003490 26.733 101 70 2 128 227 2248533 2248240 0.12 39.3 637 | AAF23559.1 ctg004770 33.333 72 43 2 305 376 5850303 5850503 0.16 38.9 638 | AAF23559.1 ctg004770 31.765 85 51 4 305 389 5837464 5837697 0.18 38.9 639 | AAF23559.1 ctg000360 30.380 79 48 3 311 389 2183120 2182905 0.30 38.1 640 | AAF23559.1 ctg000360 28.037 107 74 2 121 227 2184070 2183759 0.34 37.7 641 | AAF23559.1 ctg003600 34.722 72 42 3 305 376 2148398 2148598 0.39 37.7 642 | AAF23559.1 ctg005780 34.247 73 41 2 305 376 189831 189631 0.41 37.7 643 | AAF23559.1 ctg005780 35.385 65 34 3 311 370 7353737 7353922 5.0 34.3 644 | AAF23559.1 ctg001710 34.722 72 42 3 305 376 1457542 1457742 0.44 37.7 645 | AAF23559.1 ctg003150 33.333 72 43 3 305 376 4064346 4064146 0.50 37.4 646 | AAF23559.1 ctg003150 30.851 94 60 3 151 242 4065321 4065049 0.85 36.6 647 | AAF23559.1 ctg004730 31.944 72 44 2 305 376 1110238 1110038 0.69 37.0 648 | AAF23559.1 ctg001970 35.385 65 34 3 311 370 3855633 3855818 4.7 34.3 649 | AAF23559.1 ctg006420 35.385 65 34 3 311 370 801157 800972 7.1 33.5 650 | AAF23559.1 ctg003290 34.426 61 38 1 151 211 2081519 2081343 8.7 33.5 651 | BAB39764.1 ctg002050 85.774 239 34 0 64 302 7876034 7875318 8.08e-165 437 652 | BAB39764.1 ctg002050 83.696 92 15 0 302 393 7875321 7875046 8.08e-165 167 653 | BAB39764.1 ctg002050 86.957 46 6 0 18 63 7876863 7876726 1.22e-18 92.8 654 | BAB39764.1 ctg006430 85.774 239 34 0 64 302 4896690 4895974 8.73e-165 437 655 | BAB39764.1 ctg006430 83.696 92 15 0 302 393 4895977 4895702 8.73e-165 167 656 | BAB39764.1 ctg006430 89.130 46 5 0 18 63 4898612 4898475 3.16e-19 94.7 657 | BAB39764.1 ctg002560 83.710 221 36 0 173 393 314196 314858 4.60e-161 388 658 | BAB39764.1 ctg002560 86.792 106 14 0 64 169 313888 314205 4.60e-161 203 659 | BAB39764.1 ctg002560 89.130 46 5 0 18 63 311965 312102 3.13e-19 94.7 660 | BAB39764.1 ctg000920 64.565 333 118 0 59 391 8570996 8571994 3.10e-147 466 661 | BAB39764.1 ctg000920 60.465 43 17 0 18 60 8570802 8570930 4.30e-11 69.7 662 | BAB39764.1 ctg000920 17.526 291 187 9 140 390 12561792 12560959 0.054 40.4 663 | BAB39764.1 ctg003400 40.729 329 192 2 66 392 3061487 3060504 5.41e-81 275 664 | BAB39764.1 ctg000510 37.218 266 136 2 18 253 7158034 7157240 3.86e-68 177 665 | BAB39764.1 ctg000510 34.507 142 90 1 249 390 7157181 7156765 3.86e-68 105 666 | BAB39764.1 ctg001730 23.529 272 161 10 141 377 1423922 1424701 5.19e-07 56.6 667 | BAB39764.1 ctg001730 23.381 278 154 10 141 377 9236455 9235676 1.14e-04 49.3 668 | BAB39764.1 ctg001730 23.466 277 149 12 153 386 8691526 8690756 0.12 39.3 669 | BAB39764.1 ctg001730 27.273 66 43 2 312 377 4145334 4145152 7.3 33.5 670 | BAB39764.1 ctg003440 23.529 272 161 10 141 377 2769389 2770168 2.77e-06 54.3 671 | BAB39764.1 ctg003440 23.381 278 154 10 141 377 7073710 7072931 1.25e-04 48.9 672 | BAB39764.1 ctg005830 23.162 272 162 10 141 377 987900 987121 1.25e-05 52.4 673 | BAB39764.1 ctg005830 24.633 341 196 14 74 377 107528 108478 3.96e-05 50.4 674 | BAB39764.1 ctg000290 23.162 272 162 10 141 377 9208042 9207263 1.27e-05 52.4 675 | BAB39764.1 ctg000290 23.162 272 162 10 141 377 9197967 9197188 1.27e-05 52.4 676 | BAB39764.1 ctg000290 23.714 350 204 14 74 386 7923452 7924423 7.12e-05 49.7 677 | BAB39764.1 ctg000290 27.848 79 50 3 312 390 2988447 2988662 0.99 36.6 678 | BAB39764.1 ctg000290 32.812 64 41 1 166 229 2987646 2987831 2.4 35.0 679 | BAB39764.1 ctg003630 36.364 44 28 0 268 311 10355374 10355505 2.43e-05 41.6 680 | BAB39764.1 ctg003630 31.250 48 20 2 338 379 10355532 10355654 2.43e-05 29.3 681 | BAB39764.1 ctg003630 37.778 45 27 1 214 257 10355045 10355179 0.026 30.4 682 | BAB39764.1 ctg003630 42.105 38 20 1 181 218 10354948 10355055 0.026 29.6 683 | BAB39764.1 ctg005810 24.633 341 196 14 74 377 88135 89085 6.30e-05 50.1 684 | BAB39764.1 ctg005670 23.381 278 154 10 141 377 1329476 1330255 1.69e-04 48.5 685 | BAB39764.1 ctg005580 23.977 342 197 14 74 377 535057 536007 3.17e-04 47.8 686 | BAB39764.1 ctg005580 32.857 70 45 2 91 158 576327 576536 8.1 33.5 687 | BAB39764.1 ctg005350 57.143 42 18 0 148 189 4688476 4688601 4.63e-04 47.4 688 | BAB39764.1 ctg005680 23.684 342 198 14 74 377 1795447 1796397 5.36e-04 47.0 689 | BAB39764.1 ctg004420 31.765 85 51 3 306 390 1149346 1149579 0.003 44.3 690 | BAB39764.1 ctg004420 28.283 99 64 2 131 229 1148750 1149025 1.7 35.8 691 | BAB39764.1 ctg000930 23.333 270 164 9 141 377 966931 967710 0.009 43.1 692 | BAB39764.1 ctg003270 23.162 272 162 9 141 377 8720878 8721657 0.022 42.0 693 | BAB39764.1 ctg006640 26.744 86 54 3 306 390 3123841 3124074 0.032 41.2 694 | BAB39764.1 ctg001660 18.836 292 182 10 140 390 10084953 10084120 0.045 40.8 695 | BAB39764.1 ctg006570 27.160 81 52 3 306 386 1918144 1918365 0.060 40.4 696 | BAB39764.1 ctg006570 26.733 101 70 2 130 229 1917370 1917663 0.093 39.7 697 | BAB39764.1 ctg003150 30.612 98 61 3 282 377 4064424 4064146 0.099 39.7 698 | BAB39764.1 ctg003150 27.835 97 65 3 153 248 4065321 4065043 1.7 35.8 699 | BAB39764.1 ctg003490 27.160 81 52 3 306 386 2247758 2247537 0.11 39.7 700 | BAB39764.1 ctg003490 24.752 101 72 2 130 229 2248533 2248240 0.66 37.0 701 | BAB39764.1 ctg005840 27.160 81 52 3 306 386 113974 114195 0.13 39.3 702 | BAB39764.1 ctg005840 24.752 101 72 2 130 229 113199 113492 0.66 37.0 703 | BAB39764.1 ctg004770 30.556 72 45 2 306 377 5850303 5850503 0.18 38.9 704 | BAB39764.1 ctg004770 28.235 85 54 3 306 390 5837464 5837697 0.30 38.1 705 | BAB39764.1 ctg005780 31.944 72 44 2 306 377 189831 189631 0.31 38.1 706 | BAB39764.1 ctg005780 33.846 65 35 3 312 371 7353737 7353922 3.4 34.7 707 | BAB39764.1 ctg005780 26.115 157 102 6 74 229 190582 190151 9.8 33.1 708 | BAB39764.1 ctg000360 27.848 79 50 3 312 390 2183120 2182905 0.44 37.7 709 | BAB39764.1 ctg001710 30.556 72 45 2 306 377 1457542 1457742 0.47 37.4 710 | BAB39764.1 ctg004730 30.137 73 44 2 306 377 1110238 1110038 0.49 37.4 711 | BAB39764.1 ctg003600 30.556 72 45 2 306 377 2148398 2148598 0.49 37.4 712 | BAB39764.1 ctg001970 33.846 65 35 3 312 371 3855633 3855818 3.3 34.7 713 | BAB39764.1 ctg006420 33.846 65 35 3 312 371 801157 800972 3.4 34.7 714 | BAB39764.1 ctg001390 26.415 53 39 0 303 355 23848662 23848504 3.9 34.7 715 | BAB39764.1 ctg006770 30.612 98 47 4 183 277 1189438 1189677 8.9 33.5 716 | BAA03784.1 ctg002050 86.192 239 33 0 61 299 7876034 7875318 7.54e-166 441 717 | BAA03784.1 ctg002050 85.556 90 13 0 299 388 7875321 7875052 7.54e-166 167 718 | BAA03784.1 ctg002050 75.410 61 15 0 1 61 7876905 7876723 5.96e-22 102 719 | BAA03784.1 ctg006430 86.611 239 32 0 61 299 4896690 4895974 9.38e-166 440 720 | BAA03784.1 ctg006430 85.556 90 13 0 299 388 4895977 4895708 9.38e-166 167 721 | BAA03784.1 ctg006430 77.049 61 14 0 1 61 4898654 4898472 3.75e-23 106 722 | BAA03784.1 ctg002560 85.388 219 32 0 170 388 314196 314852 4.11e-162 395 723 | BAA03784.1 ctg002560 86.792 106 14 0 61 166 313888 314205 4.11e-162 200 724 | BAA03784.1 ctg002560 77.049 61 14 0 1 61 311923 312105 3.64e-23 106 725 | BAA03784.1 ctg000920 66.766 334 111 0 56 389 8570996 8571997 2.03e-152 480 726 | BAA03784.1 ctg000920 58.929 56 23 0 1 56 8570760 8570927 6.65e-14 78.2 727 | BAA03784.1 ctg000920 20.069 289 182 8 137 387 12561792 12560959 1.93e-06 54.7 728 | BAA03784.1 ctg003400 43.731 327 181 2 63 387 3061487 3060510 1.14e-86 291 729 | BAA03784.1 ctg003400 42.373 59 33 1 6 64 3061985 3061812 2.34e-04 48.1 730 | BAA03784.1 ctg000510 37.218 266 136 2 15 250 7158034 7157240 5.57e-70 183 731 | BAA03784.1 ctg000510 35.915 142 88 1 246 387 7157181 7156765 5.57e-70 105 732 | BAA03784.1 ctg001730 25.573 262 144 10 150 374 1423958 1424701 1.88e-08 61.2 733 | BAA03784.1 ctg001730 24.419 258 152 8 150 374 9236419 9235676 1.44e-07 58.5 734 | BAA03784.1 ctg001730 27.675 271 145 14 150 383 8691526 8690756 6.23e-06 53.1 735 | BAA03784.1 ctg001730 31.343 67 39 2 309 374 4145334 4145152 1.9 35.4 736 | BAA03784.1 ctg005670 24.031 258 153 8 150 374 1329512 1330255 2.28e-07 57.8 737 | BAA03784.1 ctg000290 24.265 272 163 10 150 389 7923659 7924441 2.49e-07 57.8 738 | BAA03784.1 ctg000290 26.054 261 144 11 150 374 9197931 9197188 4.59e-07 56.6 739 | BAA03784.1 ctg000290 25.191 262 145 10 150 374 9208006 9207263 5.23e-07 56.6 740 | BAA03784.1 ctg000290 30.337 89 60 1 138 226 2987571 2987831 0.067 40.0 741 | BAA03784.1 ctg000290 29.114 79 49 4 309 387 2988447 2988662 3.2 34.7 742 | BAA03784.1 ctg003440 25.191 262 145 10 150 374 2769425 2770168 2.58e-07 57.4 743 | BAA03784.1 ctg003440 24.903 257 152 9 150 374 7073674 7072931 2.99e-07 57.4 744 | BAA03784.1 ctg003440 31.343 67 39 2 309 374 4515878 4515696 1.1 36.2 745 | BAA03784.1 ctg005830 26.054 261 144 11 150 374 987864 987121 6.44e-07 56.2 746 | BAA03784.1 ctg005830 23.596 356 208 13 57 374 107489 108478 3.70e-06 53.9 747 | BAA03784.1 ctg005580 22.881 354 213 14 57 374 535018 536007 1.66e-06 55.1 748 | BAA03784.1 ctg006640 21.739 276 180 9 137 387 3123280 3124074 3.86e-06 53.9 749 | BAA03784.1 ctg001660 19.655 290 182 8 137 387 10084953 10084120 4.84e-06 53.5 750 | BAA03784.1 ctg005810 22.571 350 219 13 57 374 88096 89085 5.75e-06 53.1 751 | BAA03784.1 ctg003270 24.219 256 155 9 150 374 8720914 8721657 7.28e-06 52.8 752 | BAA03784.1 ctg005680 22.286 350 220 13 57 374 1795408 1796397 9.44e-06 52.4 753 | BAA03784.1 ctg005680 25.600 125 86 5 240 359 5266649 5267017 8.5 33.5 754 | BAA03784.1 ctg000930 24.609 256 154 9 150 374 966967 967710 2.41e-05 51.2 755 | BAA03784.1 ctg003630 36.364 44 28 0 265 308 10355374 10355505 1.15e-04 39.7 756 | BAA03784.1 ctg003630 28.571 42 29 1 335 376 10355532 10355654 1.15e-04 28.9 757 | BAA03784.1 ctg003630 48.718 39 19 1 211 248 10355045 10355161 0.001 35.8 758 | BAA03784.1 ctg003630 44.828 29 16 0 178 206 10354948 10355034 0.001 29.3 759 | BAA03784.1 ctg001390 20.906 287 174 9 143 387 23849247 23848420 1.26e-04 48.9 760 | BAA03784.1 ctg001390 35.616 73 37 2 108 173 3127324 3127533 0.040 40.8 761 | BAA03784.1 ctg004420 32.558 86 49 3 303 387 1149346 1149579 7.19e-04 46.6 762 | BAA03784.1 ctg004420 31.313 99 61 2 128 226 1148750 1149025 0.51 37.4 763 | BAA03784.1 ctg006570 30.693 101 66 2 127 226 1917370 1917663 0.005 43.9 764 | BAA03784.1 ctg006570 29.268 82 49 3 303 383 1918144 1918365 0.011 42.7 765 | BAA03784.1 ctg006420 38.462 65 32 3 309 368 801157 800972 0.012 42.7 766 | BAA03784.1 ctg004770 32.877 73 42 2 303 374 5850303 5850503 0.013 42.4 767 | BAA03784.1 ctg004770 33.333 72 43 3 303 374 5837464 5837664 0.17 38.9 768 | BAA03784.1 ctg005350 53.846 39 18 0 148 186 4688485 4688601 0.014 42.4 769 | BAA03784.1 ctg004730 31.507 73 43 2 303 374 1110238 1110038 0.015 42.4 770 | BAA03784.1 ctg005780 30.682 88 52 3 303 389 189831 189592 0.021 42.0 771 | BAA03784.1 ctg005780 36.923 65 33 3 309 368 7353737 7353922 0.22 38.5 772 | BAA03784.1 ctg005780 22.353 170 119 5 57 226 190621 190151 3.2 34.7 773 | BAA03784.1 ctg001710 32.877 73 42 2 303 374 1457542 1457742 0.030 41.2 774 | BAA03784.1 ctg005840 34.328 67 44 0 127 193 113199 113399 0.031 41.2 775 | BAA03784.1 ctg005840 27.679 112 69 5 275 383 113887 114195 0.053 40.4 776 | BAA03784.1 ctg003490 34.328 67 44 0 127 193 2248533 2248333 0.031 41.2 777 | BAA03784.1 ctg003490 27.679 112 69 5 275 383 2247845 2247537 0.058 40.4 778 | BAA03784.1 ctg001260 29.885 87 52 2 165 242 11482 11222 0.11 39.3 779 | BAA03784.1 ctg001970 36.923 65 33 3 309 368 3855633 3855818 0.15 38.9 780 | BAA03784.1 ctg003150 30.137 73 44 2 303 374 4064346 4064146 0.16 38.9 781 | BAA03784.1 ctg003150 27.083 96 67 2 150 245 4065321 4065043 2.9 35.0 782 | BAA03784.1 ctg003600 26.812 138 92 5 240 374 2148203 2148598 0.16 38.9 783 | BAA03784.1 ctg003600 29.870 77 52 1 150 226 2147856 2148080 2.0 35.4 784 | BAA03784.1 ctg004040 61.538 26 10 0 229 254 845152 845075 0.45 32.0 785 | BAA03784.1 ctg004040 51.852 27 9 1 205 231 845211 845143 0.45 23.5 786 | BAA03784.1 ctg000360 27.500 80 49 3 309 387 2183120 2182905 0.94 36.6 787 | BAA03784.1 ctg000360 28.571 77 53 1 150 226 2183983 2183759 1.3 35.8 788 | BAA03784.1 ctg005380 31.429 70 41 2 306 374 63450 63641 1.1 36.2 789 | BAA03784.1 ctg003290 36.066 61 37 1 150 210 2081519 2081343 4.6 34.3 790 | BAA01512.1 ctg002050 84.100 239 38 0 61 299 7876034 7875318 1.38e-163 432 791 | BAA01512.1 ctg002050 84.615 91 14 0 299 389 7875321 7875049 1.38e-163 168 792 | BAA01512.1 ctg002050 78.333 60 13 0 1 60 7876905 7876726 4.47e-23 106 793 | BAA01512.1 ctg006430 84.519 239 37 0 61 299 4896690 4895974 1.70e-163 432 794 | BAA01512.1 ctg006430 84.615 91 14 0 299 389 4895977 4895705 1.70e-163 168 795 | BAA01512.1 ctg006430 78.333 60 13 0 1 60 4898654 4898475 1.46e-23 107 796 | BAA01512.1 ctg002560 81.364 220 41 0 170 389 314196 314855 1.02e-159 381 797 | BAA01512.1 ctg002560 89.623 106 11 0 61 166 313888 314205 1.02e-159 206 798 | BAA01512.1 ctg002560 78.333 60 13 0 1 60 311923 312102 1.37e-23 107 799 | BAA01512.1 ctg000920 64.759 332 117 0 56 387 8570996 8571991 1.30e-148 466 800 | BAA01512.1 ctg000920 63.158 57 21 0 1 57 8570760 8570930 1.30e-148 84.3 801 | BAA01512.1 ctg000920 19.763 253 163 7 137 352 12561792 12561043 1.26e-04 48.9 802 | BAA01512.1 ctg003400 42.553 329 186 2 63 389 3061487 3060504 4.05e-85 286 803 | BAA01512.1 ctg003400 42.308 52 29 1 13 64 3061964 3061812 0.22 38.5 804 | BAA01512.1 ctg000510 35.231 281 149 3 2 252 7158067 7157234 4.40e-68 173 805 | BAA01512.1 ctg000510 37.143 140 83 2 250 388 7157169 7156762 4.40e-68 108 806 | BAA01512.1 ctg001730 25.769 260 146 11 150 374 1423958 1424701 1.29e-08 61.6 807 | BAA01512.1 ctg001730 24.419 258 152 8 150 374 9236419 9235676 9.44e-07 55.8 808 | BAA01512.1 ctg001730 26.740 273 145 14 150 383 8691526 8690756 7.61e-05 49.7 809 | BAA01512.1 ctg001730 31.818 44 30 0 309 352 4145334 4145203 4.5 34.3 810 | BAA01512.1 ctg003440 25.769 260 146 11 150 374 2769425 2770168 8.97e-08 58.9 811 | BAA01512.1 ctg003440 23.256 258 155 8 150 374 7073674 7072931 1.43e-05 52.0 812 | BAA01512.1 ctg003440 30.000 70 46 2 285 352 4515953 4515747 4.1 34.3 813 | BAA01512.1 ctg000290 25.000 260 148 10 150 374 9208006 9207263 2.60e-07 57.4 814 | BAA01512.1 ctg000290 25.000 260 148 10 150 374 9197931 9197188 2.74e-07 57.4 815 | BAA01512.1 ctg000290 22.189 338 208 11 71 374 7923452 7924402 6.80e-05 49.7 816 | BAA01512.1 ctg000290 29.114 79 49 2 309 387 2988447 2988662 0.13 39.3 817 | BAA01512.1 ctg000290 29.213 89 61 1 138 226 2987571 2987831 0.22 38.5 818 | BAA01512.1 ctg005830 25.000 260 148 10 150 374 987864 987121 2.91e-07 57.4 819 | BAA01512.1 ctg005830 23.768 345 194 13 71 374 107528 108478 1.37e-04 48.9 820 | BAA01512.1 ctg005670 24.031 258 153 8 150 374 1329512 1330255 1.51e-06 55.1 821 | BAA01512.1 ctg006640 21.756 262 173 8 137 374 3123280 3124041 4.25e-06 53.5 822 | BAA01512.1 ctg003630 38.636 44 27 0 265 308 10355374 10355505 5.42e-06 43.5 823 | BAA01512.1 ctg003630 30.952 42 28 1 335 376 10355532 10355654 5.42e-06 29.6 824 | BAA01512.1 ctg003630 45.455 33 18 0 211 243 10355045 10355143 0.001 34.7 825 | BAA01512.1 ctg003630 54.167 24 11 0 178 201 10354948 10355019 0.001 30.4 826 | BAA01512.1 ctg005580 24.128 344 194 12 71 374 535057 536007 3.98e-05 50.4 827 | BAA01512.1 ctg001660 18.577 253 166 6 137 352 10084953 10084204 1.43e-04 48.9 828 | BAA01512.1 ctg005810 23.768 345 194 13 71 374 88135 89085 2.51e-04 48.1 829 | BAA01512.1 ctg005680 23.256 344 197 12 71 374 1795447 1796397 4.88e-04 47.0 830 | BAA01512.1 ctg005680 32.812 64 39 2 292 352 5266805 5266993 6.6 33.9 831 | BAA01512.1 ctg004420 32.558 86 51 3 303 388 1149346 1149582 6.16e-04 46.6 832 | BAA01512.1 ctg004420 31.313 99 61 2 128 226 1148750 1149025 0.54 37.4 833 | BAA01512.1 ctg003270 22.568 257 158 8 150 374 8720914 8721657 8.05e-04 46.2 834 | BAA01512.1 ctg001390 19.522 251 158 6 143 352 23849247 23848504 0.001 45.8 835 | BAA01512.1 ctg001390 33.803 71 37 2 108 171 3127324 3127527 0.40 37.7 836 | BAA01512.1 ctg000930 23.106 264 148 9 150 374 966967 967710 0.002 45.4 837 | BAA01512.1 ctg005350 56.410 39 17 0 148 186 4688485 4688601 0.005 43.9 838 | BAA01512.1 ctg006570 29.703 101 67 2 127 226 1917370 1917663 0.007 43.5 839 | BAA01512.1 ctg006570 29.630 81 50 3 303 383 1918144 1918365 0.027 41.6 840 | BAA01512.1 ctg005840 27.723 101 69 2 127 226 113199 113492 0.043 40.8 841 | BAA01512.1 ctg005840 28.395 81 51 3 303 383 113974 114195 0.14 39.3 842 | BAA01512.1 ctg003490 27.723 101 69 2 127 226 2248533 2248240 0.043 40.8 843 | BAA01512.1 ctg003490 32.000 50 34 0 303 352 2247758 2247609 0.16 38.9 844 | BAA01512.1 ctg004770 28.713 101 61 3 274 374 5850234 5850503 0.043 40.8 845 | BAA01512.1 ctg004770 33.333 72 43 2 303 374 5837464 5837664 0.20 38.5 846 | BAA01512.1 ctg001710 27.184 103 64 3 274 374 1457461 1457742 0.13 39.3 847 | BAA01512.1 ctg000360 30.380 79 48 3 309 387 2183120 2182905 0.14 39.3 848 | BAA01512.1 ctg000360 29.213 89 61 1 138 226 2184019 2183759 0.37 37.7 849 | BAA01512.1 ctg005780 31.944 72 44 1 303 374 189831 189631 0.19 38.9 850 | BAA01512.1 ctg005780 24.571 175 119 6 71 245 190582 190097 5.7 33.9 851 | BAA01512.1 ctg003600 31.765 85 51 3 292 374 2148359 2148598 0.24 38.5 852 | BAA01512.1 ctg003150 30.556 72 45 1 303 374 4064346 4064146 0.42 37.7 853 | BAA01512.1 ctg003150 26.050 119 83 3 150 267 4065321 4064977 1.6 35.8 854 | BAA01512.1 ctg004730 31.944 72 44 2 303 374 1110238 1110038 0.46 37.4 855 | BAA01512.1 ctg003290 36.066 61 37 1 150 210 2081519 2081343 5.5 33.9 856 | BAA01512.1 ctg005380 30.435 69 43 1 306 374 63450 63641 6.4 33.9 857 | ABD24226.1 ctg002050 89.958 239 24 0 62 300 7876034 7875318 1.81e-161 429 858 | ABD24226.1 ctg002050 84.615 91 14 0 300 390 7875321 7875049 1.81e-161 164 859 | ABD24226.1 ctg002050 84.483 58 9 0 4 61 7876899 7876726 1.38e-24 110 860 | ABD24226.1 ctg006430 89.958 239 24 0 62 300 4896690 4895974 3.23e-161 428 861 | ABD24226.1 ctg006430 84.615 91 14 0 300 390 4895977 4895705 3.23e-161 164 862 | ABD24226.1 ctg006430 84.483 58 9 0 4 61 4898648 4898475 4.07e-25 112 863 | ABD24226.1 ctg002560 85.000 220 33 0 171 390 314196 314855 1.08e-157 369 864 | ABD24226.1 ctg002560 94.340 106 6 0 62 167 313888 314205 1.08e-157 211 865 | ABD24226.1 ctg002560 84.483 58 9 0 4 61 311929 312102 3.81e-25 112 866 | ABD24226.1 ctg000920 64.118 340 122 0 57 396 8570996 8572015 7.58e-142 444 867 | ABD24226.1 ctg000920 61.818 55 21 0 4 58 8570766 8570930 7.58e-142 83.6 868 | ABD24226.1 ctg000920 19.588 291 181 8 138 388 12561792 12560959 0.049 40.8 869 | ABD24226.1 ctg003400 42.857 329 185 2 64 390 3061487 3060504 2.14e-76 262 870 | ABD24226.1 ctg003400 46.154 52 27 1 14 65 3061964 3061812 0.005 43.9 871 | ABD24226.1 ctg000510 37.218 266 136 2 16 251 7158034 7157240 5.70e-61 150 872 | ABD24226.1 ctg000510 39.437 142 83 2 247 388 7157181 7156765 5.70e-61 108 873 | ABD24226.1 ctg003630 38.636 44 27 0 266 309 10355374 10355505 2.19e-06 42.7 874 | ABD24226.1 ctg003630 35.714 42 26 1 336 377 10355532 10355654 2.19e-06 31.6 875 | ABD24226.1 ctg001730 25.769 260 146 10 151 375 1423958 1424701 9.47e-06 52.8 876 | ABD24226.1 ctg001730 24.046 262 148 10 151 375 9236419 9235676 0.17 38.9 877 | ABD24226.1 ctg001730 30.864 81 49 3 304 384 8690977 8690756 0.87 36.6 878 | ABD24226.1 ctg001730 31.343 67 39 2 310 375 4145334 4145152 4.2 34.3 879 | ABD24226.1 ctg003440 25.385 260 147 10 151 375 2769425 2770168 1.62e-04 48.5 880 | ABD24226.1 ctg003440 24.419 258 152 9 151 375 7073674 7072931 0.15 39.3 881 | ABD24226.1 ctg003440 31.343 67 39 2 310 375 4515878 4515696 2.9 35.0 882 | ABD24226.1 ctg005830 25.385 260 147 10 151 375 987864 987121 1.76e-04 48.5 883 | ABD24226.1 ctg005830 24.809 262 146 10 151 375 107735 108478 0.25 38.5 884 | ABD24226.1 ctg000290 25.385 260 147 10 151 375 9197931 9197188 1.84e-04 48.5 885 | ABD24226.1 ctg000290 25.385 260 147 10 151 375 9208006 9207263 1.99e-04 48.5 886 | ABD24226.1 ctg000290 23.256 258 155 11 151 375 7923659 7924402 0.15 39.3 887 | ABD24226.1 ctg000290 29.114 79 49 3 310 388 2988447 2988662 0.53 37.4 888 | ABD24226.1 ctg000290 31.818 66 45 0 139 204 2987571 2987768 1.2 36.2 889 | ABD24226.1 ctg005350 58.974 39 16 0 149 187 4688485 4688601 4.17e-04 47.4 890 | ABD24226.1 ctg006570 32.099 81 48 3 304 384 1918144 1918365 7.63e-04 46.6 891 | ABD24226.1 ctg006570 32.000 75 50 1 128 201 1917370 1917594 0.031 41.2 892 | ABD24226.1 ctg004420 32.941 85 50 3 304 388 1149346 1149579 0.001 45.8 893 | ABD24226.1 ctg004420 35.616 73 40 2 129 201 1148750 1148947 1.5 35.8 894 | ABD24226.1 ctg003490 29.630 81 50 3 304 384 2247758 2247537 0.015 42.4 895 | ABD24226.1 ctg003490 31.343 67 46 0 128 194 2248533 2248333 0.073 40.0 896 | ABD24226.1 ctg005840 29.630 81 50 3 304 384 113974 114195 0.015 42.4 897 | ABD24226.1 ctg005840 31.343 67 46 0 128 194 113199 113399 0.073 40.0 898 | ABD24226.1 ctg006640 29.070 86 52 3 304 388 3123841 3124074 0.018 42.0 899 | ABD24226.1 ctg000360 30.380 79 48 3 310 388 2183120 2182905 0.053 40.4 900 | ABD24226.1 ctg000360 31.507 73 48 1 139 211 2184019 2183807 2.0 35.4 901 | ABD24226.1 ctg004770 31.507 73 43 2 304 375 5850303 5850503 0.068 40.0 902 | ABD24226.1 ctg004770 31.944 72 44 2 304 375 5837464 5837664 0.15 39.3 903 | ABD24226.1 ctg001710 27.885 104 62 4 275 375 1457461 1457742 0.069 40.0 904 | ABD24226.1 ctg000930 22.441 254 162 6 151 375 966967 967710 0.073 40.0 905 | ABD24226.1 ctg003270 22.047 254 163 6 151 375 8720914 8721657 0.083 40.0 906 | ABD24226.1 ctg003600 33.333 72 43 2 304 375 2148398 2148598 0.092 39.7 907 | ABD24226.1 ctg005670 24.419 258 152 8 151 375 1329512 1330255 0.12 39.3 908 | ABD24226.1 ctg005580 28.846 104 61 4 275 375 535726 536007 0.19 38.9 909 | ABD24226.1 ctg004730 31.507 73 43 2 304 375 1110238 1110038 0.22 38.5 910 | ABD24226.1 ctg005780 33.846 65 35 3 310 369 7353737 7353922 0.22 38.5 911 | ABD24226.1 ctg005780 31.507 73 43 2 304 375 189831 189631 0.24 38.5 912 | ABD24226.1 ctg001660 20.392 255 159 7 138 353 10084953 10084204 0.24 38.5 913 | ABD24226.1 ctg001970 32.308 65 36 3 310 369 3855633 3855818 0.40 37.7 914 | ABD24226.1 ctg006420 32.308 65 36 3 310 369 801157 800972 0.44 37.7 915 | ABD24226.1 ctg005680 31.507 73 43 2 304 375 1796197 1796397 0.55 37.4 916 | ABD24226.1 ctg005810 31.507 73 43 2 304 375 88885 89085 0.55 37.4 917 | ABD24226.1 ctg003290 37.037 54 34 0 151 204 2081519 2081358 0.89 36.6 918 | ABD24226.1 ctg003150 31.507 73 43 2 304 375 4064346 4064146 0.89 36.6 919 | ABD24226.1 ctg001390 19.844 257 161 6 144 358 23849247 23848486 2.2 35.4 920 | ABD24226.1 ctg001390 29.213 89 49 3 109 190 3127324 3127569 4.1 34.3 921 | ABD24226.1 ctg005380 31.429 70 41 2 307 375 63450 63641 3.1 35.0 922 | CAA43166.1 ctg006430 86.192 239 33 0 66 304 4896690 4895974 1.39e-159 433 923 | CAA43166.1 ctg006430 78.495 93 20 0 304 396 4895977 4895699 1.39e-159 154 924 | CAA43166.1 ctg006430 70.270 74 16 1 3 70 4898663 4898442 3.38e-24 109 925 | CAA43166.1 ctg002050 85.356 239 35 0 66 304 7876034 7875318 9.00e-159 430 926 | CAA43166.1 ctg002050 78.495 93 20 0 304 396 7875321 7875043 9.00e-159 154 927 | CAA43166.1 ctg002050 76.190 63 15 0 3 65 7876914 7876726 7.49e-24 108 928 | CAA43166.1 ctg002560 80.631 222 43 0 175 396 314196 314861 7.37e-156 369 929 | CAA43166.1 ctg002560 89.623 106 11 0 66 171 313888 314205 7.37e-156 205 930 | CAA43166.1 ctg002560 70.270 74 16 1 3 70 311914 312135 3.54e-24 109 931 | CAA43166.1 ctg000920 63.964 333 120 0 61 393 8570996 8571994 2.53e-146 461 932 | CAA43166.1 ctg000920 62.500 56 21 0 6 61 8570760 8570927 2.53e-146 82.0 933 | CAA43166.1 ctg000920 19.661 295 184 9 142 396 12561792 12560947 0.001 46.2 934 | CAA43166.1 ctg003400 44.343 327 179 2 68 392 3061487 3060510 1.33e-86 291 935 | CAA43166.1 ctg003400 40.351 57 33 1 12 68 3061982 3061815 0.12 39.3 936 | CAA43166.1 ctg000510 36.842 266 137 2 20 255 7158034 7157240 1.56e-68 178 937 | CAA43166.1 ctg000510 36.620 142 87 1 251 392 7157181 7156765 1.56e-68 105 938 | CAA43166.1 ctg001730 23.913 230 133 8 155 349 1423958 1424626 1.98e-05 51.6 939 | CAA43166.1 ctg001730 24.891 229 136 6 155 351 9236419 9235745 2.00e-04 48.5 940 | CAA43166.1 ctg001730 24.468 282 144 10 155 390 8691526 8690750 0.017 42.0 941 | CAA43166.1 ctg001730 25.424 118 60 3 295 392 4145448 4145119 4.4 34.3 942 | CAA43166.1 ctg003440 22.426 272 162 9 155 391 2769425 2770198 6.52e-05 50.1 943 | CAA43166.1 ctg003440 23.789 227 137 6 155 349 7073674 7073006 0.001 46.2 944 | CAA43166.1 ctg003440 28.431 102 56 3 291 392 4515917 4515663 0.46 37.4 945 | CAA43166.1 ctg005670 24.454 229 137 6 155 351 1329512 1330186 2.07e-04 48.1 946 | CAA43166.1 ctg005350 61.538 39 15 0 153 191 4688485 4688601 2.22e-04 48.1 947 | CAA43166.1 ctg000290 22.140 271 162 9 155 390 9208006 9207236 3.42e-04 47.8 948 | CAA43166.1 ctg000290 22.140 271 162 9 155 390 9197931 9197161 3.51e-04 47.8 949 | CAA43166.1 ctg000290 22.532 395 248 16 37 396 7923332 7924447 5.60e-04 47.0 950 | CAA43166.1 ctg000290 29.114 79 49 2 314 392 2988447 2988662 0.68 37.0 951 | CAA43166.1 ctg000290 26.437 87 62 1 143 229 2987571 2987825 4.6 34.3 952 | CAA43166.1 ctg001660 19.048 294 187 8 142 396 10084953 10084108 4.03e-04 47.4 953 | CAA43166.1 ctg005830 22.140 271 162 9 155 390 987864 987094 4.55e-04 47.4 954 | CAA43166.1 ctg005830 22.865 363 226 13 62 392 107489 108511 4.63e-04 47.4 955 | CAA43166.1 ctg003630 46.154 39 20 1 216 253 10355045 10355161 0.001 34.7 956 | CAA43166.1 ctg003630 42.105 38 20 1 183 220 10354948 10355055 0.001 30.4 957 | CAA43166.1 ctg003630 36.364 44 28 0 270 313 10355374 10355505 0.026 41.6 958 | CAA43166.1 ctg005580 23.161 367 220 15 62 392 535018 536040 0.003 44.7 959 | CAA43166.1 ctg004420 32.222 90 52 2 308 396 1149346 1149591 0.005 43.9 960 | CAA43166.1 ctg004420 30.612 98 61 2 133 230 1148750 1149022 0.41 37.7 961 | CAA43166.1 ctg005810 22.314 363 228 13 62 392 88096 89118 0.007 43.5 962 | CAA43166.1 ctg005680 22.039 363 229 13 62 392 1795408 1796430 0.010 42.7 963 | CAA43166.1 ctg006640 19.928 276 185 8 142 392 3123280 3124074 0.015 42.4 964 | CAA43166.1 ctg001390 18.966 290 184 8 148 396 23849247 23848408 0.019 42.0 965 | CAA43166.1 ctg001390 30.337 89 48 3 113 194 3127324 3127569 0.53 37.4 966 | CAA43166.1 ctg005780 28.302 106 59 3 291 396 189852 189586 0.021 42.0 967 | CAA43166.1 ctg005780 28.571 77 45 2 314 390 7353737 7353937 0.80 36.6 968 | CAA43166.1 ctg004770 25.472 106 62 2 291 396 5850282 5850548 0.026 41.6 969 | CAA43166.1 ctg004770 26.415 106 61 3 291 396 5837443 5837709 0.33 38.1 970 | CAA43166.1 ctg006420 29.870 77 44 2 314 390 801157 800957 0.044 40.8 971 | CAA43166.1 ctg001710 27.358 106 60 3 291 396 1457521 1457787 0.062 40.4 972 | CAA43166.1 ctg006570 25.000 100 58 2 291 390 1918123 1918371 0.065 40.4 973 | CAA43166.1 ctg006570 29.000 100 67 2 132 230 1917370 1917660 0.071 40.0 974 | CAA43166.1 ctg003150 29.412 85 53 2 308 392 4064346 4064113 0.067 40.0 975 | CAA43166.1 ctg003150 25.773 97 67 3 155 250 4065321 4065043 6.7 33.9 976 | CAA43166.1 ctg003490 24.000 100 59 2 291 390 2247779 2247531 0.34 38.1 977 | CAA43166.1 ctg003490 27.000 100 69 2 132 230 2248533 2248243 0.44 37.7 978 | CAA43166.1 ctg005840 27.000 100 69 2 132 230 113199 113489 0.44 37.7 979 | CAA43166.1 ctg005840 26.761 71 42 1 291 361 113953 114135 0.63 37.0 980 | CAA43166.1 ctg003600 27.451 102 57 3 291 392 2148377 2148631 0.46 37.4 981 | CAA43166.1 ctg001970 28.571 77 45 2 314 390 3855633 3855833 0.54 37.4 982 | CAA43166.1 ctg000930 19.703 269 175 6 155 392 966967 967743 0.63 37.0 983 | CAA43166.1 ctg003270 20.221 272 170 7 155 392 8720914 8721690 0.69 37.0 984 | CAA43166.1 ctg000360 25.316 79 52 1 314 392 2183120 2182905 0.72 37.0 985 | CAA43166.1 ctg000360 26.437 87 62 1 143 229 2184019 2183765 4.2 34.3 986 | CAA43166.1 ctg004730 25.843 89 59 2 308 396 1110238 1109993 1.4 35.8 987 | CAA41250.1 ctg002050 86.192 239 33 0 64 302 7876034 7875318 9.80e-158 419 988 | CAA41250.1 ctg002050 82.418 91 16 0 302 392 7875321 7875049 9.80e-158 162 989 | CAA41250.1 ctg002050 79.661 59 12 0 5 63 7876902 7876726 3.71e-24 109 990 | CAA41250.1 ctg006430 85.774 239 34 0 64 302 4896690 4895974 3.60e-157 417 991 | CAA41250.1 ctg006430 82.418 91 16 0 302 392 4895977 4895705 3.60e-157 162 992 | CAA41250.1 ctg006430 83.051 59 10 0 5 63 4898651 4898475 2.21e-25 113 993 | CAA41250.1 ctg002560 81.364 220 41 0 173 392 314196 314855 1.09e-153 358 994 | CAA41250.1 ctg002560 90.566 106 10 0 64 169 313888 314205 1.09e-153 209 995 | CAA41250.1 ctg002560 83.051 59 10 0 5 63 311926 312102 2.13e-25 113 996 | CAA41250.1 ctg000920 63.363 333 122 0 59 391 8570996 8571994 4.01e-139 436 997 | CAA41250.1 ctg000920 58.929 56 23 0 5 60 8570763 8570930 4.01e-139 82.4 998 | CAA41250.1 ctg000920 18.581 296 178 9 140 390 12561792 12560959 0.91 36.6 999 | CAA41250.1 ctg003400 40.426 329 193 2 66 392 3061487 3060504 5.73e-72 249 1000 | CAA41250.1 ctg000510 37.970 266 134 2 18 253 7158034 7157240 2.39e-59 153 1001 | CAA41250.1 ctg000510 33.562 146 86 2 249 390 7157181 7156765 2.39e-59 99.8 1002 | CAA41250.1 ctg003630 34.091 44 29 0 268 311 10355374 10355505 8.28e-05 38.5 1003 | CAA41250.1 ctg003630 33.333 48 19 2 338 379 10355532 10355654 8.28e-05 30.4 1004 | CAA41250.1 ctg005350 56.410 39 17 0 151 189 4688485 4688601 0.001 45.4 1005 | CAA41250.1 ctg004420 30.588 85 52 3 306 390 1149346 1149579 0.004 44.3 1006 | CAA41250.1 ctg004420 32.877 73 42 2 131 203 1148750 1148947 4.8 34.3 1007 | CAA41250.1 ctg001730 24.138 261 149 10 153 377 1423958 1424701 0.004 44.3 1008 | CAA41250.1 ctg001730 23.897 272 160 12 141 377 9236455 9235676 0.11 39.7 1009 | CAA41250.1 ctg001730 30.488 82 48 3 306 386 8690977 8690756 0.52 37.4 1010 | CAA41250.1 ctg003440 24.265 272 159 12 141 377 7073710 7072931 0.042 40.8 1011 | CAA41250.1 ctg003440 22.711 273 162 10 141 377 2769389 2770168 0.17 38.9 1012 | CAA41250.1 ctg005830 20.974 267 174 10 141 377 987900 987121 0.12 39.7 1013 | CAA41250.1 ctg005830 30.556 72 45 2 306 377 108278 108478 1.5 35.8 1014 | CAA41250.1 ctg006570 25.926 81 53 3 306 386 1918144 1918365 0.12 39.3 1015 | CAA41250.1 ctg006570 29.630 81 56 1 130 209 1917370 1917612 0.27 38.1 1016 | CAA41250.1 ctg000290 20.974 267 174 10 141 377 9208042 9207263 0.12 39.3 1017 | CAA41250.1 ctg000290 20.974 267 174 10 141 377 9197967 9197188 0.12 39.3 1018 | CAA41250.1 ctg000290 28.395 81 51 3 306 386 7924202 7924423 0.85 36.6 1019 | CAA41250.1 ctg000290 26.582 79 51 3 312 390 2988447 2988662 1.9 35.4 1020 | CAA41250.1 ctg000290 31.507 73 48 1 141 213 2987571 2987783 5.2 34.3 1021 | CAA41250.1 ctg005670 24.364 275 155 11 141 377 1329476 1330255 0.13 39.3 1022 | CAA41250.1 ctg003490 25.926 81 53 3 306 386 2247758 2247537 0.23 38.5 1023 | CAA41250.1 ctg003490 28.986 69 49 0 130 198 2248533 2248327 0.78 37.0 1024 | CAA41250.1 ctg005840 25.926 81 53 3 306 386 113974 114195 0.25 38.5 1025 | CAA41250.1 ctg005840 28.986 69 49 0 130 198 113199 113405 0.78 37.0 1026 | CAA41250.1 ctg003600 31.944 72 44 3 306 377 2148398 2148598 0.41 37.7 1027 | CAA41250.1 ctg003270 29.703 101 59 6 277 377 8721391 8721657 0.42 37.7 1028 | CAA41250.1 ctg000930 31.944 72 44 3 306 377 967510 967710 0.51 37.4 1029 | CAA41250.1 ctg001390 30.682 88 47 3 112 192 3127327 3127569 0.57 37.4 1030 | CAA41250.1 ctg001390 24.194 62 42 1 294 355 23848674 23848504 6.8 33.9 1031 | CAA41250.1 ctg004770 29.167 72 46 2 306 377 5850303 5850503 0.68 37.0 1032 | CAA41250.1 ctg004770 29.412 85 53 4 306 390 5837464 5837697 0.84 36.6 1033 | CAA41250.1 ctg003150 29.703 101 59 5 277 377 4064412 4064146 0.87 36.6 1034 | CAA41250.1 ctg000360 26.582 79 51 3 312 390 2183120 2182905 0.94 36.6 1035 | CAA41250.1 ctg005780 30.556 72 45 2 306 377 189831 189631 0.99 36.6 1036 | CAA41250.1 ctg005780 31.429 70 40 3 307 371 7353722 7353922 2.3 35.4 1037 | CAA41250.1 ctg005580 30.556 72 45 2 306 377 535807 536007 1.4 36.2 1038 | CAA41250.1 ctg005680 30.556 72 45 2 306 377 1796197 1796397 1.4 35.8 1039 | CAA41250.1 ctg005810 30.556 72 45 2 306 377 88885 89085 1.4 35.8 1040 | CAA41250.1 ctg001710 31.944 72 44 3 306 377 1457542 1457742 1.5 35.8 1041 | CAA41250.1 ctg004730 28.767 73 45 2 306 377 1110238 1110038 1.6 35.8 1042 | CAA41250.1 ctg001660 23.232 99 60 3 294 390 10084374 10084120 2.2 35.4 1043 | CAA41250.1 ctg001970 31.429 70 40 3 307 371 3855618 3855818 2.8 35.0 1044 | CAA41250.1 ctg006420 32.308 65 36 3 312 371 801157 800972 3.4 34.7 1045 | CAA41250.1 ctg003290 36.066 61 37 1 153 213 2081519 2081343 4.7 34.3 1046 | CAA86218.1 ctg002050 86.611 239 32 0 64 302 7876034 7875318 1.25e-160 441 1047 | CAA86218.1 ctg002050 85.556 90 13 0 302 391 7875321 7875052 1.25e-160 149 1048 | CAA86218.1 ctg002050 79.661 59 12 0 5 63 7876902 7876726 8.51e-23 105 1049 | CAA86218.1 ctg006430 86.611 239 32 0 64 302 4896690 4895974 2.06e-160 441 1050 | CAA86218.1 ctg006430 85.556 90 13 0 302 391 4895977 4895708 2.06e-160 149 1051 | CAA86218.1 ctg006430 81.356 59 11 0 5 63 4898651 4898475 2.39e-23 107 1052 | CAA86218.1 ctg002560 84.932 219 33 0 173 391 314196 314852 1.11e-156 372 1053 | CAA86218.1 ctg002560 87.736 106 13 0 64 169 313888 314205 1.11e-156 205 1054 | CAA86218.1 ctg002560 81.356 59 11 0 5 63 311926 312102 2.23e-23 107 1055 | CAA86218.1 ctg000920 64.985 337 118 0 59 395 8570996 8572006 7.56e-143 453 1056 | CAA86218.1 ctg000920 55.357 56 25 0 5 60 8570763 8570930 7.56e-143 78.2 1057 | CAA86218.1 ctg003400 41.284 327 189 2 66 390 3061487 3060510 1.81e-76 262 1058 | CAA86218.1 ctg003400 44.231 52 28 1 16 67 3061964 3061812 0.12 39.3 1059 | CAA86218.1 ctg000510 36.842 266 137 2 18 253 7158034 7157240 3.73e-65 177 1060 | CAA86218.1 ctg000510 36.986 146 81 2 249 390 7157181 7156765 3.73e-65 94.4 1061 | CAA86218.1 ctg001730 24.615 260 149 9 153 377 1423958 1424701 3.24e-06 54.3 1062 | CAA86218.1 ctg001730 24.046 262 148 10 153 377 9236419 9235676 0.026 41.6 1063 | CAA86218.1 ctg003630 36.364 44 28 0 268 311 10355374 10355505 1.40e-05 42.0 1064 | CAA86218.1 ctg003630 33.333 42 27 1 338 379 10355532 10355654 1.40e-05 29.6 1065 | CAA86218.1 ctg003630 48.718 39 19 1 214 251 10355045 10355161 7.25e-04 35.4 1066 | CAA86218.1 ctg003630 48.276 29 15 0 181 209 10354948 10355034 7.25e-04 30.0 1067 | CAA86218.1 ctg003440 24.615 260 149 9 153 377 2769425 2770168 1.80e-05 51.6 1068 | CAA86218.1 ctg003440 23.723 274 158 11 141 377 7073710 7072931 0.017 42.0 1069 | CAA86218.1 ctg000290 24.231 260 150 9 153 377 9208006 9207263 8.18e-05 49.7 1070 | CAA86218.1 ctg000290 24.231 260 150 9 153 377 9197931 9197188 8.54e-05 49.7 1071 | CAA86218.1 ctg000290 29.730 111 72 3 141 251 2987571 2987885 0.013 42.4 1072 | CAA86218.1 ctg000290 21.771 271 171 9 153 392 7923659 7924441 0.15 38.9 1073 | CAA86218.1 ctg005830 24.231 260 150 9 153 377 987864 987121 9.39e-05 49.3 1074 | CAA86218.1 ctg005830 23.755 261 150 8 153 377 107735 108478 0.24 38.5 1075 | CAA86218.1 ctg005350 56.410 39 17 0 151 189 4688485 4688601 0.003 44.7 1076 | CAA86218.1 ctg006570 30.693 101 66 2 130 229 1917370 1917663 0.003 44.7 1077 | CAA86218.1 ctg006640 21.014 276 182 8 140 390 3123280 3124074 0.008 43.1 1078 | CAA86218.1 ctg005670 23.333 270 164 9 141 377 1329476 1330255 0.011 42.7 1079 | CAA86218.1 ctg005840 28.000 100 70 1 130 229 113199 113492 0.019 42.0 1080 | CAA86218.1 ctg003490 28.000 100 70 1 130 229 2248533 2248240 0.019 42.0 1081 | CAA86218.1 ctg003270 23.256 258 155 8 153 377 8720914 8721657 0.034 41.2 1082 | CAA86218.1 ctg000360 29.213 89 61 1 141 229 2184019 2183759 0.049 40.8 1083 | CAA86218.1 ctg000930 23.643 258 154 8 153 377 966967 967710 0.063 40.4 1084 | CAA86218.1 ctg001390 32.877 73 39 2 111 176 3127324 3127533 0.14 39.3 1085 | CAA86218.1 ctg004420 32.323 99 60 2 131 229 1148750 1149025 0.22 38.5 1086 | CAA86218.1 ctg005810 23.755 261 150 8 153 377 88342 89085 0.35 37.7 1087 | CAA86218.1 ctg003290 37.705 61 36 1 153 213 2081519 2081343 0.58 37.4 1088 | CAA86218.1 ctg005580 23.077 260 153 8 153 377 535264 536007 0.93 36.6 1089 | CAA86218.1 ctg005680 22.901 262 151 8 153 377 1795654 1796397 1.6 35.8 1090 | CAA86218.1 ctg005680 28.571 91 59 2 157 243 5266231 5266497 3.4 34.7 1091 | CAA86218.1 ctg003150 27.835 97 65 3 153 248 4065321 4065043 3.0 35.0 1092 | CAA86218.1 ctg003600 28.125 96 66 2 153 248 2147856 2148134 3.7 34.7 1093 | AAK49457.1 ctg002050 92.050 239 19 0 61 299 7876034 7875318 1.26e-159 459 1094 | AAK49457.1 ctg002050 87.640 89 11 0 299 387 7875321 7875055 1.26e-159 127 1095 | AAK49457.1 ctg002050 83.607 61 10 0 1 61 7876905 7876723 1.45e-25 113 1096 | AAK49457.1 ctg006430 91.632 239 20 0 61 299 4896690 4895974 3.21e-159 458 1097 | AAK49457.1 ctg006430 87.640 89 11 0 299 387 4895977 4895711 3.21e-159 127 1098 | AAK49457.1 ctg006430 83.607 61 10 0 1 61 4898654 4898472 2.29e-26 115 1099 | AAK49457.1 ctg002560 87.615 218 27 0 170 387 314196 314849 2.21e-155 358 1100 | AAK49457.1 ctg002560 95.283 106 5 0 61 166 313888 314205 2.21e-155 214 1101 | AAK49457.1 ctg002560 83.607 61 10 0 1 61 311923 312105 2.24e-26 115 1102 | AAK49457.1 ctg000920 65.569 334 115 0 56 389 8570996 8571997 4.16e-142 439 1103 | AAK49457.1 ctg000920 64.912 57 20 0 1 57 8570760 8570930 4.16e-142 89.4 1104 | AAK49457.1 ctg003400 43.731 327 181 2 63 387 3061487 3060510 3.89e-78 266 1105 | AAK49457.1 ctg000510 38.577 267 133 2 15 251 7158034 7157237 3.40e-66 182 1106 | AAK49457.1 ctg000510 37.063 143 87 1 246 388 7157181 7156762 3.40e-66 93.2 1107 | AAK49457.1 ctg001730 25.475 263 143 10 150 374 1423958 1424701 1.84e-05 51.6 1108 | AAK49457.1 ctg001730 22.628 274 161 9 138 374 9236455 9235676 0.018 42.0 1109 | AAK49457.1 ctg003630 36.364 44 28 0 265 308 10355374 10355505 1.10e-04 41.2 1110 | AAK49457.1 ctg003630 30.952 42 28 1 335 376 10355532 10355654 1.10e-04 26.9 1111 | AAK49457.1 ctg003630 53.846 39 17 1 211 248 10355045 10355161 1.88e-04 37.4 1112 | AAK49457.1 ctg003630 48.276 29 15 0 178 206 10354948 10355034 1.88e-04 30.0 1113 | AAK49457.1 ctg003440 25.322 233 126 8 150 344 2769425 2770093 2.76e-04 47.8 1114 | AAK49457.1 ctg003440 23.358 274 159 10 138 374 7073710 7072931 0.008 43.1 1115 | AAK49457.1 ctg000290 24.904 261 147 9 150 374 9208006 9207263 3.17e-04 47.8 1116 | AAK49457.1 ctg000290 24.904 261 147 9 150 374 9197931 9197188 3.37e-04 47.8 1117 | AAK49457.1 ctg000290 21.751 354 218 14 71 389 7923452 7924441 0.004 44.3 1118 | AAK49457.1 ctg000290 29.730 111 72 3 138 248 2987571 2987885 0.010 42.7 1119 | AAK49457.1 ctg005830 24.904 261 147 9 150 374 987864 987121 4.40e-04 47.4 1120 | AAK49457.1 ctg005830 23.304 339 203 12 71 374 107528 108478 0.002 45.4 1121 | AAK49457.1 ctg005580 23.009 339 204 13 71 374 535057 536007 0.002 44.7 1122 | AAK49457.1 ctg005350 56.410 39 17 0 148 186 4688485 4688601 0.002 44.7 1123 | AAK49457.1 ctg005810 23.304 339 203 12 71 374 88135 89085 0.003 44.7 1124 | AAK49457.1 ctg006570 25.758 132 86 3 104 226 1917277 1917663 0.006 43.5 1125 | AAK49457.1 ctg005670 22.593 270 166 8 138 374 1329476 1330255 0.008 43.1 1126 | AAK49457.1 ctg005680 21.856 334 214 10 71 374 1795447 1796397 0.012 42.7 1127 | AAK49457.1 ctg005840 23.664 131 90 2 104 226 113106 113492 0.041 40.8 1128 | AAK49457.1 ctg003490 23.664 131 90 2 104 226 2248626 2248240 0.041 40.8 1129 | AAK49457.1 ctg000360 28.090 89 62 1 138 226 2184019 2183759 0.043 40.8 1130 | AAK49457.1 ctg001260 31.034 87 51 2 165 242 11482 11222 0.078 40.0 1131 | AAK49457.1 ctg005780 25.143 175 118 6 71 245 190582 190097 0.16 38.9 1132 | AAK49457.1 ctg001440 26.966 89 49 4 101 189 289483 289701 0.23 38.5 1133 | AAK49457.1 ctg004420 30.303 99 62 2 128 226 1148750 1149025 0.51 37.4 1134 | AAK49457.1 ctg003150 26.804 97 66 3 150 245 4065321 4065043 0.51 37.4 1135 | AAK49457.1 ctg003290 36.066 61 37 1 150 210 2081519 2081343 0.82 36.6 1136 | AAK49457.1 ctg001390 32.394 71 38 2 108 171 3127324 3127527 1.3 36.2 1137 | AGW22222.1 ctg002050 87.967 241 29 0 61 301 7876034 7875312 2.87e-156 422 1138 | AGW22222.1 ctg002050 88.764 89 10 0 299 387 7875321 7875055 2.87e-156 153 1139 | AGW22222.1 ctg002050 83.607 61 10 0 1 61 7876905 7876723 1.70e-26 116 1140 | AGW22222.1 ctg006430 88.285 239 28 0 61 299 4896690 4895974 5.79e-156 421 1141 | AGW22222.1 ctg006430 88.764 89 10 0 299 387 4895977 4895711 5.79e-156 153 1142 | AGW22222.1 ctg006430 85.246 61 9 0 1 61 4898654 4898472 1.00e-27 120 1143 | AGW22222.1 ctg002560 85.321 218 32 0 170 387 314196 314849 2.92e-152 352 1144 | AGW22222.1 ctg002560 93.396 106 7 0 61 166 313888 314205 2.92e-152 210 1145 | AGW22222.1 ctg002560 85.246 61 9 0 1 61 311923 312105 1.04e-27 120 1146 | AGW22222.1 ctg000920 66.265 332 112 0 56 387 8570996 8571991 3.18e-139 436 1147 | AGW22222.1 ctg000920 57.895 57 24 0 1 57 8570760 8570930 3.18e-139 82.8 1148 | AGW22222.1 ctg000920 19.200 250 162 6 137 349 12561792 12561052 0.32 38.1 1149 | AGW22222.1 ctg003400 45.122 328 177 2 63 388 3061487 3060507 1.38e-77 265 1150 | AGW22222.1 ctg000510 38.346 266 133 2 15 250 7158034 7157240 6.79e-59 147 1151 | AGW22222.1 ctg000510 36.620 142 87 1 246 387 7157181 7156765 6.79e-59 103 1152 | AGW22222.1 ctg003630 36.364 44 28 0 265 308 10355374 10355505 2.94e-05 41.2 1153 | AGW22222.1 ctg003630 33.333 42 27 1 335 376 10355532 10355654 2.94e-05 28.9 1154 | AGW22222.1 ctg005350 58.974 39 16 0 148 186 4688485 4688601 5.01e-04 47.0 1155 | AGW22222.1 ctg001730 23.755 261 150 8 150 374 1423958 1424701 0.001 46.2 1156 | AGW22222.1 ctg001730 30.000 110 56 4 276 383 8691028 8690756 0.013 42.4 1157 | AGW22222.1 ctg001730 29.487 78 38 2 303 374 9235876 9235676 0.053 40.4 1158 | AGW22222.1 ctg004420 30.233 86 53 2 303 388 1149346 1149582 0.004 44.3 1159 | AGW22222.1 ctg003440 23.755 261 150 8 150 374 2769425 2770168 0.008 43.1 1160 | AGW22222.1 ctg003440 31.944 72 44 2 303 374 7073131 7072931 0.062 40.4 1161 | AGW22222.1 ctg000290 23.372 261 151 8 150 374 9208006 9207263 0.024 41.6 1162 | AGW22222.1 ctg000290 23.372 261 151 8 150 374 9197931 9197188 0.024 41.6 1163 | AGW22222.1 ctg000290 29.167 72 46 1 303 374 7924202 7924402 1.2 36.2 1164 | AGW22222.1 ctg005830 23.372 261 151 8 150 374 987864 987121 0.024 41.6 1165 | AGW22222.1 ctg005830 29.167 72 46 1 303 374 108278 108478 1.4 35.8 1166 | AGW22222.1 ctg005670 29.487 78 38 2 303 374 1330055 1330255 0.059 40.4 1167 | AGW22222.1 ctg006570 28.395 81 51 2 303 383 1918144 1918365 0.12 39.3 1168 | AGW22222.1 ctg006570 29.333 75 52 1 127 200 1917370 1917594 0.56 37.4 1169 | AGW22222.1 ctg006640 25.882 85 56 2 303 387 3123841 3124074 0.14 39.3 1170 | AGW22222.1 ctg001660 19.600 250 161 6 137 349 10084953 10084213 0.15 38.9 1171 | AGW22222.1 ctg004770 29.487 78 38 2 303 374 5850303 5850503 0.39 37.7 1172 | AGW22222.1 ctg004770 29.167 72 46 1 303 374 5837464 5837664 1.4 35.8 1173 | AGW22222.1 ctg001390 32.394 71 38 2 108 171 3127324 3127527 0.48 37.4 1174 | AGW22222.1 ctg001390 20.565 248 153 7 143 349 23849247 23848513 2.5 35.0 1175 | AGW22222.1 ctg006420 31.169 77 43 2 309 385 801157 800957 0.53 37.4 1176 | AGW22222.1 ctg003490 25.926 81 53 2 303 383 2247758 2247537 0.60 37.0 1177 | AGW22222.1 ctg003490 28.358 67 48 0 127 193 2248533 2248333 1.4 35.8 1178 | AGW22222.1 ctg005780 29.167 72 46 1 303 374 189831 189631 0.72 37.0 1179 | AGW22222.1 ctg005840 27.160 81 52 2 303 383 113974 114195 0.74 37.0 1180 | AGW22222.1 ctg005840 28.358 67 48 0 127 193 113199 113399 1.4 35.8 1181 | AGW22222.1 ctg003150 29.167 72 46 1 303 374 4064346 4064146 0.79 36.6 1182 | AGW22222.1 ctg001710 29.167 72 46 1 303 374 1457542 1457742 0.91 36.6 1183 | AGW22222.1 ctg005580 27.184 103 64 3 274 374 535726 536007 1.1 36.2 1184 | AGW22222.1 ctg005810 29.167 72 46 1 303 374 88885 89085 1.4 35.8 1185 | AGW22222.1 ctg004730 27.778 72 47 1 303 374 1110238 1110038 1.5 35.8 1186 | AGW22222.1 ctg005680 29.167 72 46 1 303 374 1796197 1796397 1.6 35.8 1187 | AGW22222.1 ctg000930 29.167 72 46 1 303 374 967510 967710 1.7 35.8 1188 | AGW22222.1 ctg002660 30.928 97 53 3 298 388 1171424 1171690 1.7 35.8 1189 | AGW22222.1 ctg003600 29.167 72 46 1 303 374 2148398 2148598 1.9 35.4 1190 | AGW22222.1 ctg003270 27.778 72 47 1 303 374 8721457 8721657 4.3 34.3 1191 | AGW22222.1 ctg000360 26.582 79 51 2 309 387 2183120 2182905 7.3 33.5 1192 | ACE60221.1 ctg002050 87.967 241 29 0 61 301 7876034 7875312 3.20e-156 422 1193 | ACE60221.1 ctg002050 88.764 89 10 0 299 387 7875321 7875055 3.20e-156 153 1194 | ACE60221.1 ctg002050 85.246 61 9 0 1 61 7876905 7876723 3.91e-27 118 1195 | ACE60221.1 ctg006430 88.285 239 28 0 61 299 4896690 4895974 6.19e-156 421 1196 | ACE60221.1 ctg006430 88.764 89 10 0 299 387 4895977 4895711 6.19e-156 153 1197 | ACE60221.1 ctg006430 86.885 61 8 0 1 61 4898654 4898472 2.60e-28 121 1198 | ACE60221.1 ctg002560 85.321 218 32 0 170 387 314196 314849 2.95e-152 352 1199 | ACE60221.1 ctg002560 93.396 106 7 0 61 166 313888 314205 2.95e-152 210 1200 | ACE60221.1 ctg002560 86.885 61 8 0 1 61 311923 312105 2.55e-28 121 1201 | ACE60221.1 ctg000920 66.265 332 112 0 56 387 8570996 8571991 4.04e-139 436 1202 | ACE60221.1 ctg000920 57.895 57 24 0 1 57 8570760 8570930 4.04e-139 82.4 1203 | ACE60221.1 ctg000920 19.200 250 162 6 137 349 12561792 12561052 0.30 38.1 1204 | ACE60221.1 ctg003400 45.427 328 176 2 63 388 3061487 3060507 1.36e-77 265 1205 | ACE60221.1 ctg000510 38.722 266 132 2 15 250 7158034 7157240 1.82e-59 149 1206 | ACE60221.1 ctg000510 36.620 142 87 1 246 387 7157181 7156765 1.82e-59 103 1207 | ACE60221.1 ctg003630 36.364 44 28 0 265 308 10355374 10355505 3.01e-05 41.2 1208 | ACE60221.1 ctg003630 33.333 42 27 1 335 376 10355532 10355654 3.01e-05 28.9 1209 | ACE60221.1 ctg005350 58.974 39 16 0 148 186 4688485 4688601 5.05e-04 47.0 1210 | ACE60221.1 ctg001730 23.755 261 150 8 150 374 1423958 1424701 0.001 46.2 1211 | ACE60221.1 ctg001730 30.000 110 56 4 276 383 8691028 8690756 0.013 42.4 1212 | ACE60221.1 ctg001730 29.487 78 38 2 303 374 9235876 9235676 0.051 40.4 1213 | ACE60221.1 ctg004420 30.233 86 53 2 303 388 1149346 1149582 0.004 44.3 1214 | ACE60221.1 ctg003440 23.755 261 150 8 150 374 2769425 2770168 0.008 43.1 1215 | ACE60221.1 ctg003440 31.944 72 44 2 303 374 7073131 7072931 0.062 40.4 1216 | ACE60221.1 ctg005830 23.372 261 151 8 150 374 987864 987121 0.022 41.6 1217 | ACE60221.1 ctg005830 29.167 72 46 1 303 374 108278 108478 1.4 35.8 1218 | ACE60221.1 ctg000290 23.372 261 151 8 150 374 9208006 9207263 0.023 41.6 1219 | ACE60221.1 ctg000290 23.372 261 151 8 150 374 9197931 9197188 0.023 41.6 1220 | ACE60221.1 ctg000290 29.167 72 46 1 303 374 7924202 7924402 1.4 35.8 1221 | ACE60221.1 ctg005670 29.487 78 38 2 303 374 1330055 1330255 0.057 40.4 1222 | ACE60221.1 ctg006570 28.395 81 51 2 303 383 1918144 1918365 0.11 39.3 1223 | ACE60221.1 ctg006570 29.333 75 52 1 127 200 1917370 1917594 0.55 37.4 1224 | ACE60221.1 ctg001660 20.238 252 157 7 137 349 10084953 10084213 0.14 39.3 1225 | ACE60221.1 ctg006640 25.882 85 56 2 303 387 3123841 3124074 0.14 39.3 1226 | ACE60221.1 ctg004770 29.487 78 38 2 303 374 5850303 5850503 0.39 37.7 1227 | ACE60221.1 ctg004770 29.167 72 46 1 303 374 5837464 5837664 1.3 36.2 1228 | ACE60221.1 ctg001390 32.394 71 38 2 108 171 3127324 3127527 0.47 37.4 1229 | ACE60221.1 ctg001390 20.565 248 153 7 143 349 23849247 23848513 2.5 35.0 1230 | ACE60221.1 ctg006420 31.169 77 43 2 309 385 801157 800957 0.53 37.4 1231 | ACE60221.1 ctg003490 25.926 81 53 2 303 383 2247758 2247537 0.60 37.0 1232 | ACE60221.1 ctg003490 28.358 67 48 0 127 193 2248533 2248333 1.3 36.2 1233 | ACE60221.1 ctg005780 29.167 72 46 1 303 374 189831 189631 0.68 37.0 1234 | ACE60221.1 ctg005840 27.160 81 52 2 303 383 113974 114195 0.73 37.0 1235 | ACE60221.1 ctg005840 28.358 67 48 0 127 193 113199 113399 1.3 36.2 1236 | ACE60221.1 ctg003150 29.167 72 46 1 303 374 4064346 4064146 0.81 36.6 1237 | ACE60221.1 ctg001710 29.167 72 46 1 303 374 1457542 1457742 0.89 36.6 1238 | ACE60221.1 ctg005580 27.184 103 64 3 274 374 535726 536007 1.2 36.2 1239 | ACE60221.1 ctg005810 29.167 72 46 1 303 374 88885 89085 1.4 35.8 1240 | ACE60221.1 ctg005680 29.167 72 46 1 303 374 1796197 1796397 1.5 35.8 1241 | ACE60221.1 ctg004730 27.778 72 47 1 303 374 1110238 1110038 1.5 35.8 1242 | ACE60221.1 ctg000930 29.167 72 46 1 303 374 967510 967710 1.6 35.8 1243 | ACE60221.1 ctg002660 30.928 97 53 3 298 388 1171424 1171690 1.7 35.8 1244 | ACE60221.1 ctg003600 29.167 72 46 1 303 374 2148398 2148598 1.9 35.4 1245 | ACE60221.1 ctg003270 27.778 72 47 1 303 374 8721457 8721657 4.1 34.3 1246 | ACE60221.1 ctg000360 26.582 79 51 2 309 387 2183120 2182905 7.7 33.5 1247 | AIC75908.1 ctg002050 87.866 239 29 0 61 299 7876034 7875318 2.15e-169 448 1248 | AIC75908.1 ctg002050 87.778 90 11 0 299 388 7875321 7875052 2.15e-169 171 1249 | AIC75908.1 ctg002050 80.328 61 12 0 1 61 7876905 7876723 1.52e-25 113 1250 | AIC75908.1 ctg006430 88.285 239 28 0 61 299 4896690 4895974 2.90e-169 447 1251 | AIC75908.1 ctg006430 87.778 90 11 0 299 388 4895977 4895708 2.90e-169 171 1252 | AIC75908.1 ctg006430 81.967 61 11 0 1 61 4898654 4898472 9.92e-27 117 1253 | AIC75908.1 ctg002560 86.301 219 30 0 170 388 314196 314852 1.52e-165 400 1254 | AIC75908.1 ctg002560 90.566 106 10 0 61 166 313888 314205 1.52e-165 207 1255 | AIC75908.1 ctg002560 81.967 61 11 0 1 61 311923 312105 1.04e-26 117 1256 | AIC75908.1 ctg000920 64.865 333 117 0 56 388 8570996 8571994 7.15e-151 476 1257 | AIC75908.1 ctg000920 52.632 57 27 0 1 57 8570760 8570930 1.26e-13 77.4 1258 | AIC75908.1 ctg000920 19.455 257 163 7 137 354 12561792 12561037 5.27e-04 47.0 1259 | AIC75908.1 ctg003400 45.260 327 176 2 63 387 3061487 3060510 5.79e-88 295 1260 | AIC75908.1 ctg000510 38.346 266 133 2 15 250 7158034 7157240 6.25e-70 181 1261 | AIC75908.1 ctg000510 36.986 146 81 2 246 387 7157181 7156765 6.25e-70 106 1262 | AIC75908.1 ctg001730 24.904 261 147 9 150 374 1423958 1424701 3.74e-08 60.1 1263 | AIC75908.1 ctg001730 25.581 258 149 9 150 374 9236419 9235676 1.08e-06 55.5 1264 | AIC75908.1 ctg001730 28.467 274 139 16 150 383 8691526 8690756 5.42e-06 53.1 1265 | AIC75908.1 ctg001730 31.884 69 36 2 309 374 4145334 4145152 5.9 33.9 1266 | AIC75908.1 ctg000290 24.521 261 148 9 150 374 9197931 9197188 8.01e-07 55.8 1267 | AIC75908.1 ctg000290 24.521 261 148 9 150 374 9208006 9207263 1.14e-06 55.5 1268 | AIC75908.1 ctg000290 21.246 353 217 14 71 387 7923452 7924435 2.45e-04 48.1 1269 | AIC75908.1 ctg000290 27.957 93 65 1 138 230 2987571 2987843 0.12 39.3 1270 | AIC75908.1 ctg000290 26.582 79 51 2 309 387 2988447 2988662 0.82 36.6 1271 | AIC75908.1 ctg005830 24.521 261 148 9 150 374 987864 987121 1.04e-06 55.5 1272 | AIC75908.1 ctg005830 23.824 340 200 13 71 374 107528 108478 2.74e-05 51.2 1273 | AIC75908.1 ctg005670 25.194 258 150 9 150 374 1329512 1330255 1.27e-06 55.5 1274 | AIC75908.1 ctg003440 24.138 261 149 9 150 374 2769425 2770168 2.75e-06 54.3 1275 | AIC75908.1 ctg003440 23.704 270 163 9 138 374 7073710 7072931 1.05e-05 52.4 1276 | AIC75908.1 ctg003440 30.303 66 41 1 309 374 4515878 4515696 6.1 33.9 1277 | AIC75908.1 ctg003630 36.364 44 28 0 265 308 10355374 10355505 9.92e-06 40.8 1278 | AIC75908.1 ctg003630 34.043 47 20 2 335 376 10355532 10355654 9.92e-06 31.2 1279 | AIC75908.1 ctg003630 51.282 39 18 1 211 248 10355045 10355161 0.001 35.0 1280 | AIC75908.1 ctg003630 54.167 24 11 0 178 201 10354948 10355019 0.001 30.0 1281 | AIC75908.1 ctg005580 23.529 340 201 13 71 374 535057 536007 1.00e-04 49.3 1282 | AIC75908.1 ctg001660 19.923 261 163 8 137 356 10084953 10084186 1.75e-04 48.5 1283 | AIC75908.1 ctg005810 23.235 340 202 14 71 374 88135 89085 5.09e-04 47.0 1284 | AIC75908.1 ctg005680 22.941 340 203 13 71 374 1795447 1796397 5.09e-04 47.0 1285 | AIC75908.1 ctg006640 20.992 262 175 8 137 374 3123280 3124041 5.18e-04 47.0 1286 | AIC75908.1 ctg005350 58.974 39 16 0 148 186 4688485 4688601 5.60e-04 47.0 1287 | AIC75908.1 ctg003270 21.451 317 208 9 89 374 8720737 8721657 0.001 45.8 1288 | AIC75908.1 ctg004420 34.118 85 49 3 303 387 1149346 1149579 0.001 45.8 1289 | AIC75908.1 ctg004420 30.097 103 65 2 128 230 1148750 1149037 0.13 39.3 1290 | AIC75908.1 ctg000930 21.203 316 210 7 89 374 966790 967710 0.004 44.3 1291 | AIC75908.1 ctg006570 25.735 136 89 3 104 230 1917277 1917675 0.004 43.9 1292 | AIC75908.1 ctg006570 29.630 81 50 3 303 383 1918144 1918365 0.027 41.6 1293 | AIC75908.1 ctg001390 20.158 253 158 7 143 354 23849247 23848498 0.009 43.1 1294 | AIC75908.1 ctg001390 32.394 71 38 2 108 171 3127324 3127527 0.63 37.0 1295 | AIC75908.1 ctg005840 24.265 136 91 3 104 230 113106 113504 0.029 41.2 1296 | AIC75908.1 ctg005840 28.395 81 51 3 303 383 113974 114195 0.17 38.9 1297 | AIC75908.1 ctg003490 24.265 136 91 3 104 230 2248626 2248228 0.029 41.2 1298 | AIC75908.1 ctg003490 28.395 81 51 3 303 383 2247758 2247537 0.16 38.9 1299 | AIC75908.1 ctg004770 31.507 73 43 2 303 374 5850303 5850503 0.12 39.3 1300 | AIC75908.1 ctg004770 29.412 85 53 3 303 387 5837464 5837697 0.48 37.4 1301 | AIC75908.1 ctg000360 26.882 93 66 1 138 230 2184019 2183747 0.13 39.3 1302 | AIC75908.1 ctg000360 27.848 79 50 3 309 387 2183120 2182905 1.4 35.8 1303 | AIC75908.1 ctg001260 29.885 87 52 2 165 242 11482 11222 0.14 39.3 1304 | AIC75908.1 ctg001710 31.507 73 43 2 303 374 1457542 1457742 0.24 38.5 1305 | AIC75908.1 ctg005780 31.507 73 43 2 303 374 189831 189631 0.24 38.5 1306 | AIC75908.1 ctg005780 25.625 160 107 5 71 230 190582 190139 3.9 34.7 1307 | AIC75908.1 ctg005780 32.308 65 36 2 309 368 7353737 7353922 9.1 33.1 1308 | AIC75908.1 ctg006420 33.846 65 35 2 309 368 801157 800972 0.28 38.1 1309 | AIC75908.1 ctg003150 31.944 72 44 2 303 374 4064346 4064146 0.46 37.4 1310 | AIC75908.1 ctg003150 25.773 97 67 3 150 245 4065321 4065043 8.8 33.5 1311 | AIC75908.1 ctg003600 31.944 72 44 2 303 374 2148398 2148598 1.0 36.2 1312 | AIC75908.1 ctg004730 30.556 72 45 2 303 374 1110238 1110038 1.4 35.8 1313 | AIC75908.1 ctg001970 32.308 65 36 2 309 368 3855633 3855818 3.3 34.7 1314 | AIC75908.1 ctg004040 57.692 26 11 0 229 254 845152 845075 4.0 29.3 1315 | AIC75908.1 ctg004040 50.000 24 8 1 205 228 845211 845152 4.0 23.1 1316 | AIC75908.1 ctg005380 26.506 83 52 3 306 387 63450 63674 7.3 33.5 1317 | EOY05368.1 ctg002050 86.611 239 32 0 61 299 7876034 7875318 9.51e-160 417 1318 | EOY05368.1 ctg002050 87.640 89 11 0 299 387 7875321 7875055 9.51e-160 169 1319 | EOY05368.1 ctg002050 83.607 61 10 0 1 61 7876905 7876723 1.40e-26 116 1320 | EOY05368.1 ctg006430 87.029 239 31 0 61 299 4896690 4895974 1.69e-159 417 1321 | EOY05368.1 ctg006430 87.640 89 11 0 299 387 4895977 4895711 1.69e-159 169 1322 | EOY05368.1 ctg006430 85.246 61 9 0 1 61 4898654 4898472 1.06e-27 119 1323 | EOY05368.1 ctg002560 85.321 218 32 0 170 387 314196 314849 6.02e-156 371 1324 | EOY05368.1 ctg002560 89.623 106 11 0 61 166 313888 314205 6.02e-156 203 1325 | EOY05368.1 ctg002560 85.246 61 9 0 1 61 311923 312105 1.14e-27 119 1326 | EOY05368.1 ctg000920 65.060 332 116 0 56 387 8570996 8571991 3.63e-144 451 1327 | EOY05368.1 ctg000920 59.649 57 23 0 1 57 8570760 8570930 3.63e-144 84.7 1328 | EOY05368.1 ctg000920 20.233 257 161 7 137 354 12561792 12561037 0.034 41.2 1329 | EOY05368.1 ctg003400 44.817 328 178 2 63 388 3061487 3060507 8.95e-79 268 1330 | EOY05368.1 ctg000510 37.594 266 135 2 15 250 7158034 7157240 7.81e-60 146 1331 | EOY05368.1 ctg000510 36.620 142 87 1 246 387 7157181 7156765 7.81e-60 107 1332 | EOY05368.1 ctg003630 36.364 44 28 0 265 308 10355374 10355505 9.24e-06 42.4 1333 | EOY05368.1 ctg003630 34.043 47 20 2 335 376 10355532 10355654 9.24e-06 30.0 1334 | EOY05368.1 ctg004420 34.483 87 48 3 303 388 1149346 1149582 2.42e-04 48.1 1335 | EOY05368.1 ctg001730 23.077 260 153 9 150 374 1423958 1424701 2.96e-04 47.8 1336 | EOY05368.1 ctg001730 31.481 108 57 4 276 383 8691028 8690756 0.002 45.1 1337 | EOY05368.1 ctg001730 23.552 259 153 9 150 374 9236419 9235676 0.026 41.6 1338 | EOY05368.1 ctg001730 34.091 44 29 0 309 352 4145334 4145203 9.4 33.1 1339 | EOY05368.1 ctg005350 58.974 39 16 0 148 186 4688485 4688601 5.55e-04 47.0 1340 | EOY05368.1 ctg003440 23.077 260 153 9 150 374 2769425 2770168 0.004 44.3 1341 | EOY05368.1 ctg003440 24.460 139 94 5 240 374 7073326 7072931 0.043 40.8 1342 | EOY05368.1 ctg003440 32.609 46 31 0 309 354 4515878 4515741 10.0 33.1 1343 | EOY05368.1 ctg005830 22.692 260 154 9 150 374 987864 987121 0.008 43.1 1344 | EOY05368.1 ctg005830 32.877 73 42 2 303 374 108278 108478 0.20 38.5 1345 | EOY05368.1 ctg000290 22.692 260 154 9 150 374 9208006 9207263 0.008 43.1 1346 | EOY05368.1 ctg000290 22.692 260 154 9 150 374 9197931 9197188 0.008 43.1 1347 | EOY05368.1 ctg000290 29.070 86 52 3 303 387 7924202 7924435 0.13 39.3 1348 | EOY05368.1 ctg000290 27.848 79 50 2 309 387 2988447 2988662 0.44 37.7 1349 | EOY05368.1 ctg006640 33.333 72 43 3 303 374 3123841 3124041 0.013 42.4 1350 | EOY05368.1 ctg001660 20.233 257 161 7 137 354 10084953 10084198 0.019 42.0 1351 | EOY05368.1 ctg006570 29.630 81 50 3 303 383 1918144 1918365 0.032 41.2 1352 | EOY05368.1 ctg006570 29.851 67 47 0 127 193 1917370 1917570 0.54 37.4 1353 | EOY05368.1 ctg005670 32.877 73 42 2 303 374 1330055 1330255 0.039 40.8 1354 | EOY05368.1 ctg004770 32.877 73 42 2 303 374 5850303 5850503 0.050 40.4 1355 | EOY05368.1 ctg004770 29.412 85 53 3 303 387 5837464 5837697 0.45 37.4 1356 | EOY05368.1 ctg003490 32.692 52 35 0 303 354 2247758 2247603 0.085 39.7 1357 | EOY05368.1 ctg003490 28.358 67 48 0 127 193 2248533 2248333 1.3 36.2 1358 | EOY05368.1 ctg005780 32.877 73 42 2 303 374 189831 189631 0.11 39.7 1359 | EOY05368.1 ctg001710 32.877 73 42 2 303 374 1457542 1457742 0.12 39.3 1360 | EOY05368.1 ctg005840 30.909 55 38 0 300 354 113965 114129 0.13 39.3 1361 | EOY05368.1 ctg005840 28.358 67 48 0 127 193 113199 113399 1.3 36.2 1362 | EOY05368.1 ctg005680 32.877 73 42 2 303 374 1796197 1796397 0.20 38.5 1363 | EOY05368.1 ctg005580 32.877 73 42 2 303 374 535807 536007 0.21 38.5 1364 | EOY05368.1 ctg005810 32.877 73 42 2 303 374 88885 89085 0.22 38.5 1365 | EOY05368.1 ctg001390 20.949 253 156 7 143 354 23849247 23848498 0.35 37.7 1366 | EOY05368.1 ctg001390 32.394 71 38 2 108 171 3127324 3127527 0.66 37.0 1367 | EOY05368.1 ctg003150 31.507 73 43 2 303 374 4064346 4064146 0.50 37.4 1368 | EOY05368.1 ctg000930 30.556 72 45 1 303 374 967510 967710 0.55 37.4 1369 | EOY05368.1 ctg004730 30.137 73 44 2 303 374 1110238 1110038 0.57 37.4 1370 | EOY05368.1 ctg002660 29.474 95 59 3 298 389 1171424 1171693 0.67 37.0 1371 | EOY05368.1 ctg003600 30.556 72 45 1 303 374 2148398 2148598 0.69 37.0 1372 | EOY05368.1 ctg000360 28.750 80 48 3 309 387 2183120 2182905 0.74 37.0 1373 | EOY05368.1 ctg006420 32.308 65 36 2 309 368 801157 800972 0.81 36.6 1374 | EOY05368.1 ctg003270 25.180 139 93 5 240 374 8721262 8721657 1.2 36.2 1375 | EOY05368.1 ctg005380 31.429 70 41 2 306 374 63450 63641 3.5 34.7 1376 | XP_012454899.1 ctg002050 87.866 239 29 0 61 299 7876034 7875318 2.77e-161 422 1377 | XP_012454899.1 ctg002050 88.764 89 10 0 299 387 7875321 7875055 2.77e-161 170 1378 | XP_012454899.1 ctg002050 81.967 61 11 0 1 61 7876905 7876723 3.51e-26 115 1379 | XP_012454899.1 ctg006430 87.866 239 29 0 61 299 4896690 4895974 7.98e-161 421 1380 | XP_012454899.1 ctg006430 88.764 89 10 0 299 387 4895977 4895711 7.98e-161 170 1381 | XP_012454899.1 ctg006430 83.607 61 10 0 1 61 4898654 4898472 2.90e-27 118 1382 | XP_012454899.1 ctg002560 85.321 218 32 0 170 387 314196 314849 2.02e-157 372 1383 | XP_012454899.1 ctg002560 92.453 106 8 0 61 166 313888 314205 2.02e-157 207 1384 | XP_012454899.1 ctg002560 83.607 61 10 0 1 61 311923 312105 2.90e-27 118 1385 | XP_012454899.1 ctg000920 66.265 332 112 0 56 387 8570996 8571991 3.01e-146 457 1386 | XP_012454899.1 ctg000920 59.649 57 23 0 1 57 8570760 8570930 3.01e-146 84.7 1387 | XP_012454899.1 ctg000920 20.233 257 161 7 137 354 12561792 12561037 0.051 40.4 1388 | XP_012454899.1 ctg003400 44.343 327 179 2 63 387 3061487 3060510 9.21e-79 268 1389 | XP_012454899.1 ctg000510 37.594 266 135 2 15 250 7158034 7157240 9.06e-60 147 1390 | XP_012454899.1 ctg000510 36.735 147 82 2 246 388 7157181 7156762 9.06e-60 107 1391 | XP_012454899.1 ctg003630 36.364 44 28 0 265 308 10355374 10355505 1.31e-05 41.2 1392 | XP_012454899.1 ctg003630 33.333 42 27 1 335 376 10355532 10355654 1.31e-05 30.4 1393 | XP_012454899.1 ctg001730 24.521 261 148 9 150 374 1423958 1424701 1.36e-04 48.9 1394 | XP_012454899.1 ctg001730 31.481 108 57 4 276 383 8691028 8690756 0.002 44.7 1395 | XP_012454899.1 ctg001730 24.806 258 151 9 150 374 9236419 9235676 0.014 42.4 1396 | XP_012454899.1 ctg001730 34.091 44 29 0 309 352 4145334 4145203 8.0 33.5 1397 | XP_012454899.1 ctg005350 58.974 39 16 0 148 186 4688485 4688601 5.23e-04 47.0 1398 | XP_012454899.1 ctg004420 32.558 86 51 3 303 388 1149346 1149582 6.21e-04 46.6 1399 | XP_012454899.1 ctg003440 24.521 261 148 9 150 374 2769425 2770168 0.001 45.8 1400 | XP_012454899.1 ctg003440 31.944 72 44 2 303 374 7073131 7072931 0.040 40.8 1401 | XP_012454899.1 ctg003440 30.303 66 41 1 309 374 4515878 4515696 6.3 33.9 1402 | XP_012454899.1 ctg005830 24.138 261 149 9 150 374 987864 987121 0.003 44.3 1403 | XP_012454899.1 ctg005830 32.877 73 42 2 303 374 108278 108478 0.23 38.5 1404 | XP_012454899.1 ctg000290 24.138 261 149 9 150 374 9208006 9207263 0.004 44.3 1405 | XP_012454899.1 ctg000290 24.138 261 149 9 150 374 9197931 9197188 0.004 44.3 1406 | XP_012454899.1 ctg000290 32.877 73 42 2 303 374 7924202 7924402 0.21 38.5 1407 | XP_012454899.1 ctg000290 29.114 79 49 2 309 387 2988447 2988662 0.23 38.5 1408 | XP_012454899.1 ctg006640 28.235 85 54 3 303 387 3123841 3124074 0.012 42.7 1409 | XP_012454899.1 ctg001660 20.233 257 161 7 137 354 10084953 10084198 0.015 42.4 1410 | XP_012454899.1 ctg006570 29.630 81 50 3 303 383 1918144 1918365 0.016 42.4 1411 | XP_012454899.1 ctg006570 29.851 67 47 0 127 193 1917370 1917570 0.54 37.4 1412 | XP_012454899.1 ctg005670 24.419 258 152 9 150 374 1329512 1330255 0.022 41.6 1413 | XP_012454899.1 ctg004770 32.877 73 42 2 303 374 5850303 5850503 0.058 40.4 1414 | XP_012454899.1 ctg004770 29.412 85 53 3 303 387 5837464 5837697 0.44 37.7 1415 | XP_012454899.1 ctg003490 32.692 52 35 0 303 354 2247758 2247603 0.071 40.0 1416 | XP_012454899.1 ctg003490 28.358 67 48 0 127 193 2248533 2248333 1.3 35.8 1417 | XP_012454899.1 ctg005840 27.381 84 54 3 300 383 113965 114195 0.10 39.7 1418 | XP_012454899.1 ctg005840 28.358 67 48 0 127 193 113199 113399 1.3 35.8 1419 | XP_012454899.1 ctg005780 32.877 73 42 2 303 374 189831 189631 0.12 39.3 1420 | XP_012454899.1 ctg001710 32.877 73 42 2 303 374 1457542 1457742 0.13 39.3 1421 | XP_012454899.1 ctg005580 29.808 104 60 4 274 374 535726 536007 0.16 38.9 1422 | XP_012454899.1 ctg005680 32.877 73 42 2 303 374 1796197 1796397 0.22 38.5 1423 | XP_012454899.1 ctg005810 32.877 73 42 2 303 374 88885 89085 0.24 38.5 1424 | XP_012454899.1 ctg001390 32.394 71 38 2 108 171 3127324 3127527 0.41 37.7 1425 | XP_012454899.1 ctg001390 20.949 253 156 7 143 354 23849247 23848498 0.45 37.4 1426 | XP_012454899.1 ctg000930 30.556 72 45 1 303 374 967510 967710 0.51 37.4 1427 | XP_012454899.1 ctg003150 34.615 52 34 0 303 354 4064346 4064191 0.52 37.4 1428 | XP_012454899.1 ctg006420 32.308 65 36 2 309 368 801157 800972 0.59 37.0 1429 | XP_012454899.1 ctg000360 29.114 79 49 3 309 387 2183120 2182905 0.59 37.0 1430 | XP_012454899.1 ctg003600 30.556 72 45 1 303 374 2148398 2148598 0.62 37.0 1431 | XP_012454899.1 ctg004730 30.137 73 44 2 303 374 1110238 1110038 0.62 37.0 1432 | XP_012454899.1 ctg003270 30.137 73 44 2 303 374 8721457 8721657 1.9 35.4 1433 | XP_012454899.1 ctg005380 31.429 70 41 2 306 374 63450 63641 4.2 34.3 1434 | KHG14899.1 ctg002050 88.285 239 28 0 61 299 7876034 7875318 9.94e-162 424 1435 | KHG14899.1 ctg002050 88.764 89 10 0 299 387 7875321 7875055 9.94e-162 170 1436 | KHG14899.1 ctg002050 81.967 61 11 0 1 61 7876905 7876723 3.64e-26 115 1437 | KHG14899.1 ctg006430 88.703 239 27 0 61 299 4896690 4895974 1.60e-161 423 1438 | KHG14899.1 ctg006430 88.764 89 10 0 299 387 4895977 4895711 1.60e-161 170 1439 | KHG14899.1 ctg006430 83.607 61 10 0 1 61 4898654 4898472 2.82e-27 118 1440 | KHG14899.1 ctg002560 85.780 218 31 0 170 387 314196 314849 4.83e-158 371 1441 | KHG14899.1 ctg002560 93.396 106 7 0 61 166 313888 314205 4.83e-158 210 1442 | KHG14899.1 ctg002560 83.607 61 10 0 1 61 311923 312105 2.82e-27 118 1443 | KHG14899.1 ctg000920 66.265 332 112 0 56 387 8570996 8571991 3.77e-145 454 1444 | KHG14899.1 ctg000920 59.649 57 23 0 1 57 8570760 8570930 3.77e-145 84.7 1445 | KHG14899.1 ctg000920 20.233 257 161 7 137 354 12561792 12561037 0.044 40.8 1446 | KHG14899.1 ctg003400 44.954 327 177 2 63 387 3061487 3060510 1.05e-79 271 1447 | KHG14899.1 ctg000510 37.970 266 134 2 15 250 7158034 7157240 2.06e-60 149 1448 | KHG14899.1 ctg000510 36.735 147 82 2 246 388 7157181 7156762 2.06e-60 106 1449 | KHG14899.1 ctg003630 36.364 44 28 0 265 308 10355374 10355505 1.21e-05 41.2 1450 | KHG14899.1 ctg003630 33.333 42 27 1 335 376 10355532 10355654 1.21e-05 30.4 1451 | KHG14899.1 ctg001730 24.138 261 149 9 150 374 1423958 1424701 9.62e-05 49.3 1452 | KHG14899.1 ctg001730 31.481 108 57 4 276 383 8691028 8690756 0.003 44.7 1453 | KHG14899.1 ctg001730 33.333 72 43 2 303 374 9235876 9235676 0.026 41.6 1454 | KHG14899.1 ctg001730 34.091 44 29 0 309 352 4145334 4145203 8.1 33.5 1455 | KHG14899.1 ctg005350 58.974 39 16 0 148 186 4688485 4688601 5.60e-04 47.0 1456 | KHG14899.1 ctg004420 32.558 86 51 3 303 388 1149346 1149582 7.58e-04 46.6 1457 | KHG14899.1 ctg003440 24.138 261 149 9 150 374 2769425 2770168 7.98e-04 46.2 1458 | KHG14899.1 ctg003440 31.944 72 44 2 303 374 7073131 7072931 0.040 40.8 1459 | KHG14899.1 ctg003440 30.303 66 41 1 309 374 4515878 4515696 6.7 33.9 1460 | KHG14899.1 ctg000290 23.755 261 150 9 150 374 9208006 9207263 0.003 44.7 1461 | KHG14899.1 ctg000290 23.755 261 150 9 150 374 9197931 9197188 0.003 44.7 1462 | KHG14899.1 ctg000290 32.877 73 42 2 303 374 7924202 7924402 0.21 38.5 1463 | KHG14899.1 ctg000290 29.114 79 49 2 309 387 2988447 2988662 0.24 38.5 1464 | KHG14899.1 ctg005830 23.755 261 150 9 150 374 987864 987121 0.003 44.7 1465 | KHG14899.1 ctg005830 32.877 73 42 2 303 374 108278 108478 0.24 38.5 1466 | KHG14899.1 ctg006640 28.235 85 54 3 303 387 3123841 3124074 0.011 42.7 1467 | KHG14899.1 ctg006570 29.630 81 50 3 303 383 1918144 1918365 0.018 42.0 1468 | KHG14899.1 ctg006570 29.851 67 47 0 127 193 1917370 1917570 0.55 37.4 1469 | KHG14899.1 ctg001660 20.233 257 161 7 137 354 10084953 10084198 0.027 41.6 1470 | KHG14899.1 ctg005670 33.333 72 43 2 303 374 1330055 1330255 0.027 41.6 1471 | KHG14899.1 ctg004770 32.877 73 42 2 303 374 5850303 5850503 0.063 40.4 1472 | KHG14899.1 ctg004770 29.412 85 53 3 303 387 5837464 5837697 0.46 37.4 1473 | KHG14899.1 ctg003490 32.692 52 35 0 303 354 2247758 2247603 0.079 40.0 1474 | KHG14899.1 ctg003490 28.358 67 48 0 127 193 2248533 2248333 1.3 35.8 1475 | KHG14899.1 ctg005840 30.909 55 38 0 300 354 113965 114129 0.12 39.3 1476 | KHG14899.1 ctg005840 28.358 67 48 0 127 193 113199 113399 1.3 35.8 1477 | KHG14899.1 ctg005780 32.877 73 42 2 303 374 189831 189631 0.13 39.3 1478 | KHG14899.1 ctg001710 32.877 73 42 2 303 374 1457542 1457742 0.14 39.3 1479 | KHG14899.1 ctg005580 29.808 104 60 4 274 374 535726 536007 0.16 38.9 1480 | KHG14899.1 ctg005680 32.877 73 42 2 303 374 1796197 1796397 0.24 38.5 1481 | KHG14899.1 ctg005810 32.877 73 42 2 303 374 88885 89085 0.25 38.5 1482 | KHG14899.1 ctg001390 32.394 71 38 2 108 171 3127324 3127527 0.44 37.4 1483 | KHG14899.1 ctg001390 20.949 253 156 7 143 354 23849247 23848498 0.47 37.4 1484 | KHG14899.1 ctg003150 34.615 52 34 0 303 354 4064346 4064191 0.55 37.4 1485 | KHG14899.1 ctg000930 30.556 72 45 1 303 374 967510 967710 0.55 37.4 1486 | KHG14899.1 ctg006420 32.308 65 36 2 309 368 801157 800972 0.57 37.4 1487 | KHG14899.1 ctg000360 29.114 79 49 3 309 387 2183120 2182905 0.62 37.0 1488 | KHG14899.1 ctg003600 30.556 72 45 1 303 374 2148398 2148598 0.64 37.0 1489 | KHG14899.1 ctg004730 30.137 73 44 2 303 374 1110238 1110038 0.68 37.0 1490 | KHG14899.1 ctg003270 30.137 73 44 2 303 374 8721457 8721657 1.9 35.4 1491 | KHG14899.1 ctg005380 31.429 70 41 2 306 374 63450 63641 4.4 34.3 1492 | -------------------------------------------------------------------------------- /data_examples/Ct.cds.fasta.7z: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bpucker/PythonTUBS/f3f35a976450afcf8b7a7edf191ff2cb691833a5/data_examples/Ct.cds.fasta.7z -------------------------------------------------------------------------------- /data_examples/README.md: -------------------------------------------------------------------------------- 1 | # Data and examples for 'Python for Life Scientists' 2 | 3 | This collection of data and examples is part of the 'Python for Life Scientists' course run by @bpucker / @PuckerLab. 4 | 5 | AtCol0_Exons.fasta.7z (needs to be extracted before use). Source: [TAIR10](https://www.arabidopsis.org/download/)/Araport11 6 | 7 | barplots.py 8 | 9 | boxplot.py 10 | 11 | construct_heatmap.py 12 | 13 | Ct.cds.fasta.7z (needs to be extracted before use). Source: Haak et al., 2018: [10.3389/fmolb.2018.00062](https://doi.org/10.3389/fmolb.2018.00062) 14 | 15 | expression_data.ods 16 | 17 | gene_structure_plot.py 18 | 19 | genetic_code.csv 20 | 21 | heatmap.html 22 | 23 | hist_indel_lengths.py 24 | 25 | load_blast_results.py 26 | 27 | results.txt 28 | 29 | scatter_plot.py 30 | 31 | UNKNOWN_DATA.ods 32 | 33 | ## References 34 | 35 | Pucker, B., Holtgräwe, D., Rosleff Sörensen, T., Stracke, R., Viehöver, P., and Weisshaar, B. (2016). A de novo Genome Sequence Assembly of the Arabidopsis thaliana Accession Niederzenz-1 Displays Presence/Absence Variation and Strong Synteny. PloS-ONE 11:e0164321. doi: [10.1371/journal.pone.0164321](https://doi.org/10.1371/journal.pone.0164321). 36 | 37 | Pucker, B., Holtgräwe, D., & Weisshaar, B. (2017). Consideration of non-canonical splice sites improves gene prediction on the Arabidopsis thaliana Niederzenz-1 genome sequence. BMC Research Notes, 10, 667. doi: [10.1186/s13104-017-2985-y](https://doi.org/10.1186/s13104-017-2985-y). 38 | 39 | Haak, M., Vinke, S., Keller, W., Droste, J., Rückert, C., Kalinowski, J., & Pucker, B. (2018). High Quality de novo Transcriptome Assembly of Croton tiglium. Frontiers in Molecular Biosciences, 5. doi: [10.3389/fmolb.2018.00062](https://doi.org/10.3389/fmolb.2018.00062). 40 | -------------------------------------------------------------------------------- /data_examples/UNKNOWN_DATA.ods: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bpucker/PythonTUBS/f3f35a976450afcf8b7a7edf191ff2cb691833a5/data_examples/UNKNOWN_DATA.ods -------------------------------------------------------------------------------- /data_examples/barplots.py: -------------------------------------------------------------------------------- 1 | ### Boas Pucker ### 2 | ### bpucker@cebitec.uni-bielefeld.de ### 3 | ### https://github.com/bpucker/APPLS ### 4 | ### https://www.cebitec.uni-bielefeld.de/~bpucker ### 5 | 6 | __usage__ = """ 7 | python barplots.py\n 8 | --in \n 9 | --out \n 10 | feature requests and bug reports: bpucker@cebitec.uni-bielefeld.de 11 | """ 12 | 13 | 14 | import matplotlib.pyplot as plt 15 | from matplotlib import gridspec 16 | import sys, os 17 | 18 | # --- end of imports --- # 19 | 20 | 21 | def load_variants_from_vcf( vcf_file ): 22 | """! @brief loads the variant informaiton from a VCF file """ 23 | 24 | snps_per_chr = [ [], [], [], [], [] ] 25 | indels_per_chr = [ [], [], [], [], [] ] 26 | 27 | with open( vcf_file, "r" ) as f: 28 | line = f.readline() 29 | while line: 30 | if line[0] != '#': 31 | try: 32 | parts = line.strip().split('\t') 33 | if len( parts[3] ) == len( parts[4] ): #SNP 34 | snps_per_chr[ int( parts[0][-1] ) - 1 ].append( int( parts[1] ) ) 35 | else: #InDel 36 | indels_per_chr[ int( parts[0][-1] ) - 1 ].append( int( parts[1] ) ) 37 | except: 38 | pass #print line 39 | line = f.readline() 40 | return snps_per_chr, indels_per_chr 41 | 42 | 43 | def construct_plot( snps_per_chr, indels_per_chr, chr_lengths, result_file, result_table, resolution, y_max_lim=4500 ): 44 | """! @brief construct variant over Col-0 genome distribution plot """ 45 | 46 | chromosome_length_units = [ 60, 40, 50, 40, 60 ] #hard coded values!! 47 | 48 | f = plt.figure( figsize=(10,15) ) 49 | gs = gridspec.GridSpec( 5, 1 ) 50 | 51 | x_lim = [ 30, 20, 25, 20, 30 ] 52 | 53 | with open( result_table, "w" ) as out: 54 | for idx, chr_length in enumerate( chr_lengths ): 55 | chr_name = 'Chr' + str( idx + 1 ) 56 | current_grid = gridspec.GridSpecFromSubplotSpec( 1, 60, subplot_spec = gs[ idx ] ) 57 | 58 | # ---- identify positions of variants --- # 59 | upper_lim = resolution 60 | lower_lim = 0 61 | 62 | snp_data = [] 63 | indel_data = [] 64 | while True: 65 | if upper_lim >= chr_length: 66 | break 67 | else: 68 | snp_tmp = [] 69 | indel_tmp = [] 70 | for SNP in snps_per_chr[ idx ]: 71 | if SNP <= upper_lim and SNP > lower_lim: 72 | snp_tmp.append( 'X' ) 73 | for indel in indels_per_chr[ idx ]: 74 | if indel <= upper_lim and indel > lower_lim: 75 | indel_tmp.append( 'X' ) 76 | snp_data.append( len( snp_tmp ) ) 77 | indel_data.append( len( indel_tmp ) ) 78 | upper_lim += resolution 79 | lower_lim += resolution 80 | 81 | print "length of snp_data: " + str( len( snp_data ) ) 82 | 83 | # --- improving x-axis --- # 84 | ax_a = plt.subplot( current_grid[ 0: chromosome_length_units[ idx ] ] ) 85 | ax_a.set_xlim( 0, x_lim[ idx ] ) 86 | ax_a.set_ylim( 0, y_max_lim ) 87 | 88 | # --- plotting SNP and InDel distribution --- # 89 | for i, snps in enumerate( snp_data ): 90 | if i == 0: #add labels only once! 91 | ax_a.plot( ( ((i*0.5)+0.2), ((i*0.5)+0.2) ), ( 0, snps ), "-", color="black", label="SNPs" ) 92 | ax_a.plot( ( ((i*0.5)+0.3), ((i*0.5)+0.3) ), ( 0, indel_data[ i ] ), "-", color="red", label="InDels" ) 93 | else: 94 | ax_a.plot( ( ((i*0.5)+0.2), ((i*0.5)+0.2) ), ( 0, snps ), "-", color="black" ) 95 | ax_a.plot( ( ((i*0.5)+0.3), ((i*0.5)+0.3) ), ( 0, indel_data[ i ] ), "-", color="red" ) 96 | 97 | # --- writing data into output table --- # 98 | out.write( 'Chr' + str( idx+1 ) + "SNPs:\t" + '\t'.join( map( str, snp_data ) ) + '\n' ) 99 | out.write( 'Chr' + str( idx+1 ) + "InDels:\t" + '\t'.join( map( str, indel_data ) ) + '\n' ) 100 | 101 | 102 | ## --- improving ticks of y-axis a --- # 103 | max_yticks = 3 104 | yloc = plt.MaxNLocator(max_yticks) 105 | ax_a.yaxis.set_major_locator( yloc ) 106 | 107 | 108 | current_labels = ax_a.get_xticks() 109 | labels = [] 110 | for each in current_labels: 111 | labels.append( each ) 112 | ax_a.set_xticks([]) 113 | ax_a.set_xticks( labels ) 114 | 115 | ax_a.set_title( chr_name ) 116 | ax_a.set_xlabel( "[ Mbp ]" ) 117 | ax_a.set_ylabel( "number of variants" ) #"counts", "SNPs (black), InDel(red)" 118 | ax_a.legend( prop={'size':10} ) 119 | 120 | gs.update( hspace=0.75 ) 121 | plt.show() 122 | f.savefig( result_file, dpi=300 ) 123 | 124 | 125 | def main( arguments ): 126 | 127 | vcf_file = arguments[ arguments.index( '--in' )+1 ] 128 | prefix = arguments[ arguments.index( '--out' )+1 ] 129 | 130 | if prefix[-1] != '/': 131 | prefix += "/" 132 | 133 | if not os.path.exists( prefix ): 134 | os.makedirs( prefix ) 135 | 136 | result_file = prefix + "genome_wide_variants.png" 137 | result_table = prefix + "genome_wide_variants.txt" 138 | 139 | resolution = 500000 #window size for analysis 140 | chr_lengths = [ 30427671, 19698289, 23459830, 18585056, 26975502 ] #simplified script version !! 141 | snps_per_chr, indels_per_chr = load_variants_from_vcf( vcf_file ) 142 | 143 | 144 | construct_plot( snps_per_chr, indels_per_chr, chr_lengths, result_file, result_table, resolution, y_max_lim=4500 ) 145 | 146 | 147 | 148 | if __name__ == '__main__': 149 | 150 | if '--in' in sys.argv and '--out' in sys.argv: 151 | main( sys.argv ) 152 | else: 153 | sys.exit( __usage__ ) 154 | 155 | 156 | print "all done!" 157 | -------------------------------------------------------------------------------- /data_examples/boxplot.py: -------------------------------------------------------------------------------- 1 | ### Boas Pucker ### 2 | ### bpucker@cebitec.uni-bielefeld.de ### 3 | ### https://github.com/bpucker/APPLS ### 4 | ### https://www.cebitec.uni-bielefeld.de/~bpucker ### 5 | 6 | import matplotlib.pyplot as plt 7 | import numpy as np 8 | 9 | d1 = np.random.rand(50) * 100 #generate random numbers 10 | d2 = np.random.rand(50) * 100 11 | d3 = np.random.rand(50) * 100 12 | 13 | data = [d1, d2, d3] # multiple box plots on one figure 14 | 15 | plt.figure() 16 | plt.boxplot(data) 17 | plt.show() 18 | 19 | 20 | -------------------------------------------------------------------------------- /data_examples/construct_heatmap.py: -------------------------------------------------------------------------------- 1 | ### Boas Pucker ### 2 | ### bpucker@cebitec.uni-bielefeld.de ### 3 | ### https://github.com/bpucker/APPLS ### 4 | ### https://www.cebitec.uni-bielefeld.de/~bpucker ### 5 | 6 | 7 | from flask import render_template, Flask 8 | import re, pdfkit 9 | 10 | 11 | app = Flask(__name__, template_folder="/PATH_TO_HTML_TEMPLATE/") 12 | 13 | 14 | def load_gene_expression( gene_expression_file, seperator ): 15 | """! @brief load column names, geneID and expression values from given file """ 16 | 17 | # --- get max expression value --- # 18 | max_value = 0 19 | with open( gene_expression_file, "r" ) as f: 20 | header = f.readline() 21 | line = f.readline() 22 | while line: 23 | parts = line.strip().split(seperator) 24 | tmp_max_val = max( map( float, parts[9:] ) ) 25 | if tmp_max_val > max_value: 26 | max_value = tmp_max_val 27 | line = f.readline() 28 | 29 | 30 | # --- load gene expression values --- # 31 | gene_expression = [] 32 | 33 | with open( gene_expression_file, "r" ) as f: 34 | column_names = [ "gene ID" ] + f.readline().strip().split(seperator)[9:] 35 | line = f.readline() 36 | while line: 37 | parts = line.strip().split(seperator) 38 | data = [] 39 | for idx, part in enumerate( parts[9:] ): 40 | data.append( { 'title': parts[0] + '-' + column_names[ idx ], 'value': round( float( part ), 2), 'color': get_color( float( part ), max_value ) } ) 41 | gene_expression.append( { 'name': parts[0], 'values': data } ) 42 | line = f.readline() 43 | 44 | return column_names, gene_expression 45 | 46 | 47 | def render_some_template( column_names, genes ): 48 | """! @brief renders data into template and displays HTML document in browser via flask """ 49 | 50 | return render_template( "heatmap.html", genes=genes, column_names=column_names ) 51 | 52 | 53 | def clamp( x ): 54 | """! @brief checks for values outside of boundaries """ 55 | return max( 0, min(x, 255) ) 56 | 57 | 58 | def get_color( value, max_value ): 59 | """! @brief calculates background color based on current value and max_value """ 60 | 61 | ratio = float( value ) / max_value 62 | r = 255 - int( 255. * ratio ) #define RGB color code 63 | g = 255 #define RGB color code 64 | b = 255 #define RGB color code 65 | 66 | hex_color = "#{0:02x}{1:02x}{2:02x}".format( clamp(r), clamp(g), clamp(b) ) #change RGB to hex color (for HTML) 67 | return hex_color 68 | 69 | 70 | 71 | @app.route("/") 72 | def main(): 73 | """! @brief used to call all other methods """ 74 | 75 | # ---- file locations --- # 76 | gene_expression_data_file = "INPUT.csv" 77 | output_file = "heatmap.pdf" 78 | seperator="," 79 | 80 | # --- loading data --- # 81 | column_names, gene_expression = load_gene_expression( gene_expression_data_file, seperator ) 82 | 83 | 84 | # --- construction of HTML template --- # 85 | rendered_template = render_some_template( column_names, gene_expression ) 86 | 87 | 88 | # --- saving HTML to pdf --- # 89 | options = { 'page-height': 400, #CHANGE: dynamic size needed 90 | 'page-width': 200 91 | } 92 | pdfkit.from_string( rendered_template, output_file, options=options ) 93 | 94 | # --- returning the rendered HTML document for display via flask --- # 95 | return rendered_template 96 | 97 | 98 | if __name__ == "__main__": 99 | app.debug = True #leads to output of error messages on web page 100 | app.run() 101 | print "all done" 102 | -------------------------------------------------------------------------------- /data_examples/expression_data.ods: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bpucker/PythonTUBS/f3f35a976450afcf8b7a7edf191ff2cb691833a5/data_examples/expression_data.ods -------------------------------------------------------------------------------- /data_examples/gene_structure_plot.py: -------------------------------------------------------------------------------- 1 | ### Boas Pucker ### 2 | ### bpucker@cebitec.uni-bielefeld.de ### 3 | ### https://github.com/bpucker/APPLS ### 4 | ### https://www.cebitec.uni-bielefeld.de/~bpucker ### 5 | 6 | __usage__ = """ 7 | python gene_structure_plot.py\n 8 | --gff \n 9 | --out \n 10 | bug reports and feature requests: bpucker@cebitec.uni-bielefeld.de 11 | """ 12 | 13 | 14 | import matplotlib.pyplot as plt 15 | from operator import itemgetter 16 | import re 17 | 18 | # --- end of imports --- # 19 | 20 | def construct_gene_structure_plot( gene_structures, outputfile ): 21 | """! @brief constructs the plot of all elements of the gene structure """ 22 | 23 | plt.close('all') 24 | fig = plt.figure( facecolor='white' ) 25 | ax = fig.add_subplot( 111, frame_on=False ) 26 | max_length = 0 27 | annotations = [] 28 | for idx, gene_structure in enumerate( gene_structures ): 29 | 30 | if gene_structure['length'] > max_length: 31 | max_length = gene_structure['length'] 32 | 33 | # --- set positions for plotting of the features of this gene --- # 34 | exon_base_lvl = idx*5+5 35 | intron_base_lvl = idx*5+4 36 | 37 | introns = [] #are constructed while parsing the exons 38 | 39 | annotations.append( gene_structure['annotation'] ) 40 | 41 | 42 | # --- plotting all exons --- # 43 | for i, exon in enumerate( gene_structure['exons'] ): 44 | ax.plot( [ exon[0], exon[1] ], [ exon_base_lvl, exon_base_lvl ], linestyle='-', color='blue', linewidth=2.0 ) 45 | if i < ( len( gene_structure['exons'] ) - 1 ): 46 | if not gene_structure['rv_strand']: #if gene is on forward strand 47 | introns.append( ( exon[1], gene_structure['exons'][ i+1 ][0] ) ) #add new tuple to intron list 48 | else: #if gene is on reverse strand 49 | introns.append( ( exon[0], gene_structure['exons'][ i+1 ][1] ) ) #add new tuple to intron list 50 | 51 | 52 | # --- plotting all the CDS parts --- # 53 | for CDS in gene_structure['CDS']: 54 | ax.plot( [ CDS[0], CDS[1] ], [ exon_base_lvl, exon_base_lvl ], linestyle='-', color='red', linewidth=4.0 ) 55 | 56 | # --- plotting all introns --- # 57 | for intron in introns: 58 | mean = int( ( intron[0] + intron[1] ) / 2.0 ) 59 | ax.plot( [ intron[0], mean, intron[1] ], [ exon_base_lvl, intron_base_lvl, exon_base_lvl ], linestyle='-', color='green', linewidth=1.0 ) 60 | 61 | 62 | # --- add gene names --- # 63 | for idx, annotation in enumerate( annotations ): 64 | if gene_structures[idx]['rv_strand']: 65 | anno_col = 'blue' 66 | else: 67 | anno_col = 'green' 68 | ax.text( max_length, idx*5+5, "Col-0 gene"+gene_structure['annotation'], color=anno_col ) 69 | 70 | 71 | # --- set axis and label xaxis --- # 72 | ax.set_ylim( 0, len( gene_structures )*6 + 6 ) 73 | ax.set_xlim( 0, max_length+0.2*max_length ) 74 | ax.set_xlabel( "position in gene [bp]" ) 75 | 76 | # --- remove yaxis --- # 77 | ax.yaxis.set_visible( False ) 78 | 79 | #plt.show() 80 | fig.savefig( outputfile, dpi=600 ) 81 | plt.close('all') 82 | 83 | 84 | def get_information_from_gff( gff_file, gene_IDs, pattern ): 85 | """! @brief extacts information about one gene of interest from the gff file (all splice variants) """ 86 | 87 | gene_structures = [] 88 | 89 | with open( gff_file, "r" ) as f: 90 | line = f.readline() 91 | exons = [] 92 | CDS = [] 93 | length = 0 94 | prev_ID = "" 95 | while line: 96 | if line[0] != '#': 97 | try: 98 | gene_ID = re.findall( pattern, line )[0] 99 | if gene_ID in gene_IDs: 100 | if 'mRNA' in line or 'exon' in line or 'CDS' in line: 101 | if not prev_ID: 102 | prev_ID = gene_ID 103 | # --- save data of previous entry --- # 104 | if gene_ID != prev_ID: 105 | gene_structures.append( { 'length': length, 106 | 'exons': exons, 107 | 'CDS': CDS, 108 | 'annotation': prev_ID, 109 | 'rv_strand': strand 110 | } ) 111 | exons = [] 112 | CDS = [] 113 | prev_ID = gene_ID 114 | length = 0 115 | 116 | # --- collect data from line --- # 117 | parts = line.strip().split('\t') 118 | if parts[2] == 'exon': 119 | exons.append( ( int( parts[3] ), int( parts[4] ) ) ) 120 | elif parts[2] == 'CDS': 121 | CDS.append( ( int( parts[3] ), int( parts[4] ) ) ) 122 | elif parts[2] == 'mRNA': 123 | length = int( parts[4] ) - int( parts[3] ) 124 | 125 | if '+' in parts[7]: 126 | strand = True 127 | else: 128 | strand = False 129 | except IndexError: 130 | pass 131 | line = f.readline() 132 | gene_structures.append( { 'length': length, 133 | 'exons': exons, 134 | 'CDS': CDS, 135 | 'annotation': prev_ID, 136 | 'rv_strand': strand 137 | } ) 138 | return gene_structures 139 | 140 | 141 | def adjust_collected_gene_structure_values( gene_structures ): 142 | """! @brief change setoff of gene structure to 0 via length of element """ 143 | 144 | new_gene_structures = [] 145 | 146 | print gene_structures 147 | for gene in gene_structures: 148 | all_exon_borders = [] #collect all exons borders positions to find maximal value 149 | for each in gene['exons']: #iterating over all exons 150 | all_exon_borders.append( each[0] ) #and appending each values 151 | all_exon_borders.append( each[1] ) 152 | 153 | if len( all_exon_borders ) > 0: 154 | length = max( all_exon_borders ) - min( all_exon_borders ) 155 | diff = min( all_exon_borders ) 156 | try: 157 | if all_exon_borders[2] < all_exon_borders[1]: 158 | rev_strand = True 159 | else: 160 | rev_strand = False 161 | except: 162 | rev_strand = False 163 | 164 | # --- calculate new exon positions --- # 165 | new_exons = [] 166 | for exon in gene['exons']: 167 | new_exons.append( ( exon[0]-diff, exon[1]-diff ) ) 168 | 169 | # --- calculate new CDS positions --- # 170 | new_CDS = [] 171 | for part in gene['CDS']: 172 | new_CDS.append( ( part[0]-diff, part[1]-diff ) ) 173 | 174 | # --- construct new gene structure --- # 175 | new_gene_structure = { 'length': length, 176 | 'exons': new_exons, 177 | 'CDS': new_CDS, 178 | 'annotation': gene['annotation'], 179 | 'rv_strand': rev_strand #True or False 180 | } 181 | # --- collect all new gene structures in new list --- # 182 | new_gene_structures.append( new_gene_structure ) 183 | 184 | return new_gene_structures 185 | 186 | 187 | def main( arguments ): 188 | 189 | araport_gff_file = arguments[ arguments.index( '--gff' )+1 ] 190 | prefix = arguments[ arguments.index( '--out' )+1 ] 191 | 192 | araport_pattern = "AT\dG\d{5}\.1" 193 | gene_IDs = [ "AT1G01000" ] 194 | 195 | 196 | # --- collect and adjust data for gene structure from GFF file of Araport11 --- # 197 | araport_gene_structures = get_information_from_gff( araport_gff_file, gene_IDs, araport_pattern ) 198 | araport_gene_structures = adjust_collected_gene_structure_values( araport_gene_structures ) 199 | 200 | 201 | # ---- drawing gene structure plots --- # 202 | for gene_structure in araport_gene_structures: 203 | output_file = prefix + gene_structure['annotation'] + ".png" 204 | construct_gene_structure_plot( [ gene_structure ], output_file ) 205 | 206 | 207 | if __name__ == '__main__': 208 | 209 | if '--gff' in sys.argv and '--out' in sys.argv: 210 | main( sys.argv ) 211 | else: 212 | sys.exit( __usage__ ) 213 | 214 | print "all done!" 215 | -------------------------------------------------------------------------------- /data_examples/genetic_code.csv: -------------------------------------------------------------------------------- 1 | "Amino acid" "Codons" "Compressed" 2 | "Ala/A" "GCU, GCC, GCA, GCG" "GCN" 3 | "Arg/R" "CGU, CGC, CGA, CGG, AGA, AGG" "CGN, MGR" 4 | "Asn/N" "AAU, AAC" "AAY" 5 | "Asp/D" "GAU, GAC" "GAY" 6 | "Cys/C" "UGU, UGC" "UGY" 7 | "Gln/Q" "CAA, CAG" "CAR" 8 | "Glu/E" "GAA, GAG" "GAR" 9 | "Gly/G" "GGU, GGC, GGA, GGG" "GGN" 10 | "His/H" "CAU, CAC" "CAY" 11 | "Ile/I" "AUU, AUC, AUA" "AUH" 12 | "Leu/L" "UUA, UUG, CUU, CUC, CUA, CUG" "YUR, CUN" 13 | "Lys/K" "AAA, AAG" "AAR" 14 | "Met/M" "AUG" 15 | "Phe/F" "UUU, UUC" "UUY" 16 | "Pro/P" "CCU, CCC, CCA, CCG" "CCN" 17 | "Ser/S" "UCU, UCC, UCA, UCG, AGU, AGC" "UCN, AGY" 18 | "Thr/T" "ACU, ACC, ACA, ACG" "ACN" 19 | "Trp/W" "UGG" 20 | "Tyr/Y" "UAU, UAC" "UAY" 21 | "Val/V" "GUU, GUC, GUA, GUG" "GUN" 22 | "STOP" "UAA, UGA, UAG" "UAR, URA" 23 | -------------------------------------------------------------------------------- /data_examples/heatmap.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | {% for name in column_names %} 4 | 5 | {% endfor %} 6 | 7 | {% for gene in genes %} 8 | 9 | 10 | {% for value in gene['values'] %} 11 | 12 | 13 | {% endfor %} 14 | 15 | {% endfor %} 16 |
{{ name }}
{{ gene['name'] }} {{value['value']}}
17 | -------------------------------------------------------------------------------- /data_examples/hist_indel_lengths.py: -------------------------------------------------------------------------------- 1 | ### Boas Pucker ### 2 | ### bpucker@cebitec.uni-bielefeld.de ### 3 | ### https://github.com/bpucker/APPLS ### 4 | ### https://www.cebitec.uni-bielefeld.de/~bpucker ### 5 | 6 | import matplotlib.pyplot as plt 7 | 8 | # --- end of imports --- # 9 | 10 | gene_space = [ 3, 3, 6, 6, 9, 9, 12, 3, 3, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 | 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 12 | 12, 15, 18, 21, 24, 27, 30 ] 13 | intergenic = [ 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 1, 2, 3, 4, 5, 6, 7, 8, 9, 14 | 1, 2, 3, 4, 5, 6, 7, 1, 2, 3, 4, 1, 2, 1 ] 15 | 16 | 17 | fig, ( ax1, ax2 ) = plt.subplots( 1, 2, sharey=False) 18 | counts, bins, patches = ax1.hist( gene_space, bins=max( gene_space ), align="left" ) 19 | ax1.set_title( "CDS" ) 20 | ax1.set_xlim( 0, 30 ) 21 | ax1.set_xlabel( "InDel size [bp]" ) 22 | ax1.set_ylabel( "number of InDels" ) 23 | 24 | counts, bins, patches = ax2.hist( intergenic, bins=max( intergenic ), align="left" ) 25 | ax2.set_title( "not_CDS" ) 26 | ax2.set_xlim( 0, 30 ) 27 | ax2.set_xlabel( "InDel size [bp]" ) 28 | plt.subplots_adjust( wspace=0.3 ) #increase space between figures 29 | 30 | plt.show() 31 | fig.savefig( prefix + "InDel_size_distribution.png", dpi=300 ) 32 | plt.close('all') 33 | 34 | -------------------------------------------------------------------------------- /data_examples/load_blast_results.py: -------------------------------------------------------------------------------- 1 | ### Boas Pucker ### 2 | ### bpucker@cebitec.uni-bielefeld.de ### 3 | ### https://github.com/bpucker/APPLS ### 4 | ### https://www.cebitec.uni-bielefeld.de/~bpucker ### 5 | 6 | def load_BLAST_results( input_file ): 7 | """! @brief load all BLAST results from file """ 8 | 9 | data = [] 10 | with open( input_file, "r" ) as f: 11 | line = f.readline() 12 | while line: 13 | parts = line.strip().split('\t') 14 | data.append( { 'query': parts[0], 15 | 'subject': parts[1], 16 | 'query_start': int( parts[6] ), 17 | 'query_end': int( parts[7] ), 18 | 'score': float( parts[-1] ) 19 | } ) 20 | line = f.readline() 21 | return data 22 | -------------------------------------------------------------------------------- /data_examples/scatter_plot.py: -------------------------------------------------------------------------------- 1 | ### Boas Pucker ### 2 | ### bpucker@cebitec.uni-bielefeld.de ### 3 | ### https://github.com/bpucker/APPLS ### 4 | ### https://www.cebitec.uni-bielefeld.de/~bpucker ### 5 | 6 | import matplotlib.pyplot as plt 7 | 8 | fig, ax = plt.subplots( figsize=( 3, 3 ) ) #defining size of plot 9 | 10 | x_values = [ 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 ] 11 | y_values = [ 12, 6, 10, 4, 8, 14, 10, 11, 3, 9 ] 12 | 13 | ax.scatter( x_values, y_values, color="red", s=50, marker="o", label="test" ) 14 | #setting color, marker size, marker shape and label of this group 15 | 16 | ax.legend( numpoints=1 ) 17 | #each group is represented by only one marker in the legend (default=3) 18 | 19 | ax.set_xlim( 0, 11 ) #set range of x-axis 20 | ax.set_ylim( 0, 15 ) #set range of y-axis 21 | 22 | ax.set_xlabel( "pseudochromosome position [Mbp]" ) 23 | 24 | ax.spines["top"].set_visible(False) #remove lines and ticks 25 | ax.spines["right"].set_visible(False) #remove lines and ticks 26 | 27 | plt.subplots_adjust(left=0.1, right=0.99, top=0.97, bottom=0.2) 28 | #adjust size of plot within figure 29 | 30 | #plt.show() 31 | fig.savefig( "my_plot.png", dpi=600 ) #write figure into output file 32 | plt.close( "all" ) #destroy created figures (cleaning up) 33 | 34 | 35 | --------------------------------------------------------------------------------