├── .all-contributorsrc ├── .coveragerc ├── .github ├── ISSUE_TEMPLATE │ ├── bug_report.yml │ ├── documentation.yml │ └── feature_request.yml ├── PULL_REQUEST_TEMPLATE.md ├── dependabot.yml └── workflows │ ├── ebrains.yml │ ├── flake.yml │ ├── pr.yml │ ├── pypi-publish.yml │ └── test_doc.yml ├── .gitignore ├── .travis.yml ├── CITATION.cff ├── LICENSE ├── MANIFEST.in ├── Makefile ├── README.rst ├── docs ├── Makefile ├── make.bat └── source │ ├── _static │ ├── baniere.png │ ├── bhk_mrs.png │ ├── cc_cd_ccd.png │ ├── favicon.ico │ ├── feat_spec.png │ ├── frites.png │ ├── frites_128x128.png │ ├── frites_style.css │ ├── frites_top.png │ ├── gcmi_corr.png │ ├── group_level.png │ ├── logo_desc.png │ ├── logo_desc.svg │ ├── mi_reference_table.png │ ├── network_framework.png │ └── stat_pipeline.png │ ├── _templates │ ├── autosummary │ │ ├── class.rst │ │ └── function.rst │ ├── layout.html │ └── sidebar-quicklinks.html │ ├── api │ ├── api_conf.rst │ ├── api_connectivity.rst │ ├── api_core.rst │ ├── api_dataset.rst │ ├── api_estimators.rst │ ├── api_plot.rst │ ├── api_simulations.rst │ ├── api_statistics.rst │ ├── api_utils.rst │ ├── api_workflow.rst │ └── index.rst │ ├── conf.py │ ├── index.rst │ ├── install.rst │ ├── overview │ ├── index.rst │ ├── ovw_acknowledgments.rst │ ├── ovw_cite.rst │ ├── ovw_community.rst │ ├── ovw_frites.rst │ ├── ovw_goals.rst │ ├── ovw_help.rst │ ├── ovw_methods.rst │ ├── ovw_perf.rst │ ├── ovw_refs.rst │ └── ovw_whatsnew.rst │ └── refs.bib ├── examples ├── README.txt ├── armodel │ ├── README.txt │ ├── plot_ar_condcovgc.py │ ├── plot_ar_instantaneous.py │ └── plot_ar_pairwise.py ├── conn │ ├── README.txt │ ├── plot_ccf.py │ ├── plot_conn.py │ ├── plot_covgc.py │ ├── plot_dfc.py │ ├── plot_fit.py │ ├── plot_ii.py │ └── plot_pid.py ├── dataset │ ├── README.txt │ ├── plot_dataset_ephy.py │ ├── plot_dataset_mne.py │ └── plot_dataset_xarray.py ├── estimators │ ├── README.txt │ ├── plot_est_comparison.py │ ├── plot_est_custom.py │ └── plot_est_resample.py ├── mi │ ├── README.txt │ ├── plot_mi_conjunction.py │ ├── plot_mi_time_frequency.py │ ├── plot_wf_mi_cc.py │ ├── plot_wf_mi_ccd.py │ ├── plot_wf_mi_cd.py │ ├── plot_wf_mi_combine.py │ └── plot_wf_mi_contact_level.py ├── performance │ ├── README.rst │ └── plot_vector_vs_tensor.py ├── simulations │ ├── README.txt │ ├── plot_generate_random_data.py │ └── plot_ground_truth.py ├── statistics │ ├── README.txt │ ├── plot_ci_cc.py │ ├── plot_wf_mi_stats_compare_ffx.py │ └── plot_wf_mi_stats_compare_rfx.py ├── tutorials │ ├── README.txt │ ├── plot_dfc_estimator.py │ └── plot_stim_spec_network.py ├── utils │ ├── README.txt │ └── plot_time_windows.py └── xarray │ ├── README.txt │ ├── plot_xr_export.py │ └── plot_xr_quick_tour.py ├── frites ├── __init__.py ├── config.py ├── conn │ ├── __init__.py │ ├── conn_ccf.py │ ├── conn_covgc.py │ ├── conn_dfc.py │ ├── conn_fcd_corr.py │ ├── conn_fit.py │ ├── conn_ii.py │ ├── conn_io.py │ ├── conn_pid.py │ ├── conn_sliding_windows.py │ ├── conn_spec.py │ ├── conn_te.py │ ├── conn_tf.py │ ├── conn_utils.py │ └── tests │ │ ├── test_conn.py │ │ ├── test_conn_io.py │ │ ├── test_conn_spec.py │ │ ├── test_conn_utils.py │ │ └── test_fcd_corr.py ├── core │ ├── __init__.py │ ├── copnorm.py │ ├── gcmi_1d.py │ ├── gcmi_nd.py │ ├── mi_bin_ephy.py │ └── tests │ │ ├── test_copnorm.py │ │ ├── test_gcmi_1d.py │ │ ├── test_gcmi_nd.py │ │ └── test_mi_ephy.py ├── data │ ├── frites.mplstyle │ └── ggfrites.mplstyle ├── dataset │ ├── __init__.py │ ├── ds_ephy.py │ ├── ds_utils.py │ ├── suj_ephy.py │ └── tests │ │ ├── test_ds_ephy.py │ │ └── test_suj_ephy.py ├── estimator │ ├── __init__.py │ ├── est_bin.py │ ├── est_corr.py │ ├── est_custom.py │ ├── est_dcorr.py │ ├── est_gcmi.py │ ├── est_mi_base.py │ ├── est_resampling.py │ └── tests │ │ ├── test_bin_est.py │ │ ├── test_corr_est.py │ │ ├── test_custom.py │ │ ├── test_gcmi_est.py │ │ └── test_resampling_est.py ├── io │ ├── __init__.py │ ├── io_attributes.py │ ├── io_dependencies.py │ └── io_syslog.py ├── plot │ ├── __init__.py │ ├── plot_conn.py │ └── tests │ │ └── test_plot_conn.py ├── simulations │ ├── __init__.py │ ├── sim_ar.py │ ├── sim_generate_data.py │ ├── sim_local_mi.py │ ├── sim_mi.py │ └── tests │ │ ├── test_ar.py │ │ ├── test_sim_generate_data.py │ │ ├── test_sim_local_mi.py │ │ └── test_sim_mi.py ├── stats │ ├── __init__.py │ ├── stats_mcp.py │ ├── stats_nonparam.py │ ├── stats_param.py │ └── tests │ │ ├── test_stats_mcp.py │ │ ├── test_stats_nonparam.py │ │ └── test_stats_param.py ├── utils │ ├── __init__.py │ ├── parallel.py │ ├── perf.py │ ├── preproc.py │ ├── tests │ │ ├── test_perf.py │ │ └── test_preproc.py │ └── wrapper.py └── workflow │ ├── __init__.py │ ├── tests │ ├── test_wf_conn.py │ ├── test_wf_mi.py │ └── test_wf_stats_ephy.py │ ├── wf_base.py │ ├── wf_conn_comod.py │ ├── wf_mi.py │ ├── wf_mi_combine.py │ └── wf_stats.py ├── requirements.txt ├── setup.cfg └── setup.py /.all-contributorsrc: 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