├── .github └── workflows │ └── test_and_deploy.yml ├── .gitignore ├── .napari-hub ├── DESCRIPTION.md └── config.yml ├── .pre-commit-config.yaml ├── CITATION.cff ├── LICENSE ├── MANIFEST.in ├── README.md ├── brainrender_napari ├── __init__.py ├── brainrender_manager_widget.py ├── brainrender_viewer_widget.py ├── data_models │ ├── __init__.py │ ├── atlas_table_model.py │ └── structure_tree_model.py ├── napari.yaml ├── napari_atlas_representation.py ├── utils │ ├── __init__.py │ ├── formatting.py │ └── load_user_data.py └── widgets │ ├── __init__.py │ ├── atlas_manager_dialog.py │ ├── atlas_manager_filter.py │ ├── atlas_manager_view.py │ ├── atlas_progress_bar.py │ ├── atlas_viewer_view.py │ └── structure_view.py ├── pyproject.toml └── tests ├── __init__.py ├── conftest.py ├── test_integration ├── __init__.py ├── test_brainrender_manager_widget.py └── test_brainrender_viewer_widget.py └── test_unit ├── __init__.py ├── test_atlas_manager_filter.py ├── test_atlas_manager_view.py ├── test_atlas_progress_bar.py ├── test_atlas_table_model.py ├── test_atlas_viewer_view.py ├── test_download_update_dialog.py ├── test_formatting.py ├── test_metadata_reading.py ├── test_napari_atlas_representation.py ├── test_structure_tree_model.py └── test_structure_view.py /.github/workflows/test_and_deploy.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brainglobe/brainrender-napari/HEAD/.github/workflows/test_and_deploy.yml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brainglobe/brainrender-napari/HEAD/.gitignore -------------------------------------------------------------------------------- /.napari-hub/DESCRIPTION.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brainglobe/brainrender-napari/HEAD/.napari-hub/DESCRIPTION.md -------------------------------------------------------------------------------- /.napari-hub/config.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brainglobe/brainrender-napari/HEAD/.napari-hub/config.yml -------------------------------------------------------------------------------- /.pre-commit-config.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brainglobe/brainrender-napari/HEAD/.pre-commit-config.yaml -------------------------------------------------------------------------------- /CITATION.cff: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brainglobe/brainrender-napari/HEAD/CITATION.cff -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brainglobe/brainrender-napari/HEAD/LICENSE -------------------------------------------------------------------------------- /MANIFEST.in: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brainglobe/brainrender-napari/HEAD/MANIFEST.in -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brainglobe/brainrender-napari/HEAD/README.md -------------------------------------------------------------------------------- /brainrender_napari/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brainglobe/brainrender-napari/HEAD/brainrender_napari/__init__.py -------------------------------------------------------------------------------- /brainrender_napari/brainrender_manager_widget.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brainglobe/brainrender-napari/HEAD/brainrender_napari/brainrender_manager_widget.py -------------------------------------------------------------------------------- /brainrender_napari/brainrender_viewer_widget.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brainglobe/brainrender-napari/HEAD/brainrender_napari/brainrender_viewer_widget.py -------------------------------------------------------------------------------- /brainrender_napari/data_models/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /brainrender_napari/data_models/atlas_table_model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brainglobe/brainrender-napari/HEAD/brainrender_napari/data_models/atlas_table_model.py -------------------------------------------------------------------------------- /brainrender_napari/data_models/structure_tree_model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brainglobe/brainrender-napari/HEAD/brainrender_napari/data_models/structure_tree_model.py -------------------------------------------------------------------------------- /brainrender_napari/napari.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brainglobe/brainrender-napari/HEAD/brainrender_napari/napari.yaml -------------------------------------------------------------------------------- /brainrender_napari/napari_atlas_representation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brainglobe/brainrender-napari/HEAD/brainrender_napari/napari_atlas_representation.py -------------------------------------------------------------------------------- /brainrender_napari/utils/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /brainrender_napari/utils/formatting.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brainglobe/brainrender-napari/HEAD/brainrender_napari/utils/formatting.py -------------------------------------------------------------------------------- /brainrender_napari/utils/load_user_data.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brainglobe/brainrender-napari/HEAD/brainrender_napari/utils/load_user_data.py -------------------------------------------------------------------------------- /brainrender_napari/widgets/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /brainrender_napari/widgets/atlas_manager_dialog.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brainglobe/brainrender-napari/HEAD/brainrender_napari/widgets/atlas_manager_dialog.py -------------------------------------------------------------------------------- /brainrender_napari/widgets/atlas_manager_filter.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brainglobe/brainrender-napari/HEAD/brainrender_napari/widgets/atlas_manager_filter.py -------------------------------------------------------------------------------- /brainrender_napari/widgets/atlas_manager_view.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brainglobe/brainrender-napari/HEAD/brainrender_napari/widgets/atlas_manager_view.py -------------------------------------------------------------------------------- /brainrender_napari/widgets/atlas_progress_bar.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brainglobe/brainrender-napari/HEAD/brainrender_napari/widgets/atlas_progress_bar.py -------------------------------------------------------------------------------- /brainrender_napari/widgets/atlas_viewer_view.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brainglobe/brainrender-napari/HEAD/brainrender_napari/widgets/atlas_viewer_view.py -------------------------------------------------------------------------------- /brainrender_napari/widgets/structure_view.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brainglobe/brainrender-napari/HEAD/brainrender_napari/widgets/structure_view.py -------------------------------------------------------------------------------- /pyproject.toml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brainglobe/brainrender-napari/HEAD/pyproject.toml -------------------------------------------------------------------------------- /tests/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /tests/conftest.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brainglobe/brainrender-napari/HEAD/tests/conftest.py -------------------------------------------------------------------------------- /tests/test_integration/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /tests/test_integration/test_brainrender_manager_widget.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brainglobe/brainrender-napari/HEAD/tests/test_integration/test_brainrender_manager_widget.py -------------------------------------------------------------------------------- /tests/test_integration/test_brainrender_viewer_widget.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brainglobe/brainrender-napari/HEAD/tests/test_integration/test_brainrender_viewer_widget.py -------------------------------------------------------------------------------- /tests/test_unit/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /tests/test_unit/test_atlas_manager_filter.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brainglobe/brainrender-napari/HEAD/tests/test_unit/test_atlas_manager_filter.py -------------------------------------------------------------------------------- /tests/test_unit/test_atlas_manager_view.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brainglobe/brainrender-napari/HEAD/tests/test_unit/test_atlas_manager_view.py -------------------------------------------------------------------------------- /tests/test_unit/test_atlas_progress_bar.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brainglobe/brainrender-napari/HEAD/tests/test_unit/test_atlas_progress_bar.py -------------------------------------------------------------------------------- /tests/test_unit/test_atlas_table_model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brainglobe/brainrender-napari/HEAD/tests/test_unit/test_atlas_table_model.py -------------------------------------------------------------------------------- /tests/test_unit/test_atlas_viewer_view.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brainglobe/brainrender-napari/HEAD/tests/test_unit/test_atlas_viewer_view.py -------------------------------------------------------------------------------- /tests/test_unit/test_download_update_dialog.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brainglobe/brainrender-napari/HEAD/tests/test_unit/test_download_update_dialog.py -------------------------------------------------------------------------------- /tests/test_unit/test_formatting.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brainglobe/brainrender-napari/HEAD/tests/test_unit/test_formatting.py -------------------------------------------------------------------------------- /tests/test_unit/test_metadata_reading.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brainglobe/brainrender-napari/HEAD/tests/test_unit/test_metadata_reading.py -------------------------------------------------------------------------------- /tests/test_unit/test_napari_atlas_representation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brainglobe/brainrender-napari/HEAD/tests/test_unit/test_napari_atlas_representation.py -------------------------------------------------------------------------------- /tests/test_unit/test_structure_tree_model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brainglobe/brainrender-napari/HEAD/tests/test_unit/test_structure_tree_model.py -------------------------------------------------------------------------------- /tests/test_unit/test_structure_view.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brainglobe/brainrender-napari/HEAD/tests/test_unit/test_structure_view.py --------------------------------------------------------------------------------