├── +mstan ├── DataHash.m ├── check_ver.m ├── cnvbase.m ├── parse_flat_samples.m ├── parse_stan_params.m ├── randomUUID.m ├── rdump.m ├── read_lines.m ├── read_stan_csv.m ├── stan_home.m ├── stan_params.m ├── waic.m └── write_lines.m ├── .gitignore ├── Examples ├── arsenic_data.mat ├── arsenic_logistic.stan ├── exitHandler.m ├── loo_demo_arsenic.m ├── rats.m ├── rats.stan └── variational.m ├── LICENSE.txt ├── RData.m ├── README.md ├── StanFit.m ├── StanModel.m ├── Tests ├── TestBasicArray.m ├── TestBasicMatrix.m ├── TestBernoulli.m ├── TestExtract.m ├── TestMCMC.m ├── TestNormal.m ├── TestOptim.m ├── TestRstanGettingStarted.m ├── TestStanModel.m └── run_all_tests.m ├── mcmc.m ├── psis ├── README.md ├── gpdfitnew.m ├── psisloo.m ├── psislw.m └── sumlogs.m └── stan.m /+mstan/DataHash.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-lau/MatlabStan/HEAD/+mstan/DataHash.m -------------------------------------------------------------------------------- /+mstan/check_ver.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-lau/MatlabStan/HEAD/+mstan/check_ver.m -------------------------------------------------------------------------------- /+mstan/cnvbase.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-lau/MatlabStan/HEAD/+mstan/cnvbase.m -------------------------------------------------------------------------------- /+mstan/parse_flat_samples.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-lau/MatlabStan/HEAD/+mstan/parse_flat_samples.m -------------------------------------------------------------------------------- /+mstan/parse_stan_params.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-lau/MatlabStan/HEAD/+mstan/parse_stan_params.m -------------------------------------------------------------------------------- /+mstan/randomUUID.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-lau/MatlabStan/HEAD/+mstan/randomUUID.m -------------------------------------------------------------------------------- /+mstan/rdump.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-lau/MatlabStan/HEAD/+mstan/rdump.m -------------------------------------------------------------------------------- /+mstan/read_lines.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-lau/MatlabStan/HEAD/+mstan/read_lines.m -------------------------------------------------------------------------------- /+mstan/read_stan_csv.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-lau/MatlabStan/HEAD/+mstan/read_stan_csv.m -------------------------------------------------------------------------------- /+mstan/stan_home.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-lau/MatlabStan/HEAD/+mstan/stan_home.m -------------------------------------------------------------------------------- /+mstan/stan_params.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-lau/MatlabStan/HEAD/+mstan/stan_params.m -------------------------------------------------------------------------------- /+mstan/waic.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-lau/MatlabStan/HEAD/+mstan/waic.m -------------------------------------------------------------------------------- /+mstan/write_lines.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-lau/MatlabStan/HEAD/+mstan/write_lines.m -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-lau/MatlabStan/HEAD/.gitignore -------------------------------------------------------------------------------- /Examples/arsenic_data.mat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-lau/MatlabStan/HEAD/Examples/arsenic_data.mat -------------------------------------------------------------------------------- /Examples/arsenic_logistic.stan: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-lau/MatlabStan/HEAD/Examples/arsenic_logistic.stan -------------------------------------------------------------------------------- /Examples/exitHandler.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-lau/MatlabStan/HEAD/Examples/exitHandler.m -------------------------------------------------------------------------------- /Examples/loo_demo_arsenic.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-lau/MatlabStan/HEAD/Examples/loo_demo_arsenic.m -------------------------------------------------------------------------------- /Examples/rats.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-lau/MatlabStan/HEAD/Examples/rats.m -------------------------------------------------------------------------------- /Examples/rats.stan: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-lau/MatlabStan/HEAD/Examples/rats.stan -------------------------------------------------------------------------------- /Examples/variational.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-lau/MatlabStan/HEAD/Examples/variational.m -------------------------------------------------------------------------------- /LICENSE.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-lau/MatlabStan/HEAD/LICENSE.txt -------------------------------------------------------------------------------- /RData.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-lau/MatlabStan/HEAD/RData.m -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-lau/MatlabStan/HEAD/README.md -------------------------------------------------------------------------------- /StanFit.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-lau/MatlabStan/HEAD/StanFit.m -------------------------------------------------------------------------------- /StanModel.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-lau/MatlabStan/HEAD/StanModel.m -------------------------------------------------------------------------------- /Tests/TestBasicArray.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-lau/MatlabStan/HEAD/Tests/TestBasicArray.m -------------------------------------------------------------------------------- /Tests/TestBasicMatrix.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-lau/MatlabStan/HEAD/Tests/TestBasicMatrix.m -------------------------------------------------------------------------------- /Tests/TestBernoulli.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-lau/MatlabStan/HEAD/Tests/TestBernoulli.m -------------------------------------------------------------------------------- /Tests/TestExtract.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-lau/MatlabStan/HEAD/Tests/TestExtract.m -------------------------------------------------------------------------------- /Tests/TestMCMC.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-lau/MatlabStan/HEAD/Tests/TestMCMC.m -------------------------------------------------------------------------------- /Tests/TestNormal.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-lau/MatlabStan/HEAD/Tests/TestNormal.m -------------------------------------------------------------------------------- /Tests/TestOptim.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-lau/MatlabStan/HEAD/Tests/TestOptim.m -------------------------------------------------------------------------------- /Tests/TestRstanGettingStarted.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-lau/MatlabStan/HEAD/Tests/TestRstanGettingStarted.m -------------------------------------------------------------------------------- /Tests/TestStanModel.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-lau/MatlabStan/HEAD/Tests/TestStanModel.m -------------------------------------------------------------------------------- /Tests/run_all_tests.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-lau/MatlabStan/HEAD/Tests/run_all_tests.m -------------------------------------------------------------------------------- /mcmc.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-lau/MatlabStan/HEAD/mcmc.m -------------------------------------------------------------------------------- /psis/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-lau/MatlabStan/HEAD/psis/README.md -------------------------------------------------------------------------------- /psis/gpdfitnew.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-lau/MatlabStan/HEAD/psis/gpdfitnew.m -------------------------------------------------------------------------------- /psis/psisloo.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-lau/MatlabStan/HEAD/psis/psisloo.m -------------------------------------------------------------------------------- /psis/psislw.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-lau/MatlabStan/HEAD/psis/psislw.m -------------------------------------------------------------------------------- /psis/sumlogs.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-lau/MatlabStan/HEAD/psis/sumlogs.m -------------------------------------------------------------------------------- /stan.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-lau/MatlabStan/HEAD/stan.m --------------------------------------------------------------------------------