├── .codemeta ├── codemeta_base.json └── create_codemeta.py ├── .coveragerc ├── .devcontainer ├── Dockerfile ├── README.md ├── dev-requirements.txt └── devcontainer.json ├── .git-blame-ignore-revs ├── .git_archival.txt ├── .gitattributes ├── .github ├── dependabot.yml └── workflows │ ├── post_release_updates.yml │ ├── publish.yml │ ├── static_analysis.yml │ ├── test_latest.yml │ ├── testsuite.yml │ └── update-spec-0-deps.yaml ├── .gitignore ├── .gitmodules ├── .pre-commit-config.yaml ├── .readthedocs.yaml ├── AUTHORS ├── CITATION.cff ├── CITATION.md ├── CODE_OF_CONDUCT.md ├── CONTRIBUTORS ├── LICENSE ├── MANIFEST.in ├── README.md ├── brian2 ├── __init__.py ├── codegen │ ├── __init__.py │ ├── _prefs.py │ ├── codeobject.py │ ├── cpp_prefs.py │ ├── generators │ │ ├── GSL_generator.py │ │ ├── __init__.py │ │ ├── base.py │ │ ├── cpp_generator.py │ │ ├── cython_generator.py │ │ └── numpy_generator.py │ ├── get_cpu_flags.py │ ├── optimisation.py │ ├── permutation_analysis.py │ ├── runtime │ │ ├── GSLcython_rt │ │ │ ├── GSLcython_rt.py │ │ │ ├── __init__.py │ │ │ └── templates │ │ │ │ └── stateupdate.pyx │ │ ├── __init__.py │ │ ├── cython_rt │ │ │ ├── __init__.py │ │ │ ├── cython_rt.py │ │ │ ├── extension_manager.py │ │ │ └── templates │ │ │ │ ├── common_group.pyx │ │ │ │ ├── group_get_indices.pyx │ │ │ │ ├── group_variable_get.pyx │ │ │ │ ├── group_variable_get_conditional.pyx │ │ │ │ ├── group_variable_set.pyx │ │ │ │ ├── group_variable_set_conditional.pyx │ │ │ │ ├── ratemonitor.pyx │ │ │ │ ├── reset.pyx │ │ │ │ ├── spatialstateupdate.pyx │ │ │ │ ├── spikegenerator.pyx │ │ │ │ ├── spikemonitor.pyx │ │ │ │ ├── statemonitor.pyx │ │ │ │ ├── stateupdate.pyx │ │ │ │ ├── summed_variable.pyx │ │ │ │ ├── synapses.pyx │ │ │ │ ├── synapses_create_array.pyx │ │ │ │ ├── synapses_create_generator.pyx │ │ │ │ ├── synapses_push_spikes.pyx │ │ │ │ └── threshold.pyx │ │ └── numpy_rt │ │ │ ├── __init__.py │ │ │ ├── numpy_rt.py │ │ │ └── templates │ │ │ ├── common_group.py_ │ │ │ ├── group_get_indices.py_ │ │ │ ├── group_variable_get.py_ │ │ │ ├── group_variable_get_conditional.py_ │ │ │ ├── group_variable_set.py_ │ │ │ ├── group_variable_set_conditional.py_ │ │ │ ├── ratemonitor.py_ │ │ │ ├── reset.py_ │ │ │ ├── spatialstateupdate.py_ │ │ │ ├── spikegenerator.py_ │ │ │ ├── spikemonitor.py_ │ │ │ ├── statemonitor.py_ │ │ │ ├── stateupdate.py_ │ │ │ ├── summed_variable.py_ │ │ │ ├── synapses.py_ │ │ │ ├── synapses_create_array.py_ │ │ │ ├── synapses_create_generator.py_ │ │ │ ├── synapses_push_spikes.py_ │ │ │ └── threshold.py_ │ ├── statements.py │ ├── targets.py │ ├── templates.py │ └── translation.py ├── conftest.py ├── core │ ├── .gitignore │ ├── __init__.py │ ├── base.py │ ├── clocks.py │ ├── core_preferences.py │ ├── functions.py │ ├── magic.py │ ├── names.py │ ├── namespace.py │ ├── network.py │ ├── operations.py │ ├── preferences.py │ ├── spikesource.py │ ├── tracking.py │ └── variables.py ├── devices │ ├── __init__.py │ ├── cpp_standalone │ │ ├── GSLcodeobject.py │ │ ├── __init__.py │ │ ├── brianlib │ │ │ ├── clocks.h │ │ │ ├── common_math.h │ │ │ └── dynamic_array.h │ │ ├── codeobject.py │ │ ├── device.py │ │ ├── templates │ │ │ ├── common_group.cpp │ │ │ ├── common_synapses.cpp │ │ │ ├── group_variable_set.cpp │ │ │ ├── group_variable_set_conditional.cpp │ │ │ ├── main.cpp │ │ │ ├── makefile │ │ │ ├── network.cpp │ │ │ ├── objects.cpp │ │ │ ├── ratemonitor.cpp │ │ │ ├── reset.cpp │ │ │ ├── run.cpp │ │ │ ├── spatialstateupdate.cpp │ │ │ ├── spikegenerator.cpp │ │ │ ├── spikemonitor.cpp │ │ │ ├── statemonitor.cpp │ │ │ ├── stateupdate.cpp │ │ │ ├── summed_variable.cpp │ │ │ ├── synapses.cpp │ │ │ ├── synapses_classes.cpp │ │ │ ├── synapses_create_array.cpp │ │ │ ├── synapses_create_generator.cpp │ │ │ ├── synapses_push_spikes.cpp │ │ │ ├── threshold.cpp │ │ │ └── win_makefile │ │ └── templates_GSL │ │ │ └── stateupdate.cpp │ └── device.py ├── equations │ ├── __init__.py │ ├── codestrings.py │ ├── equations.py │ ├── refractory.py │ └── unitcheck.py ├── groups │ ├── __init__.py │ ├── group.py │ ├── neurongroup.py │ └── subgroup.py ├── hears.py ├── importexport │ ├── __init__.py │ ├── dictlike.py │ └── importexport.py ├── input │ ├── __init__.py │ ├── binomial.py │ ├── poissongroup.py │ ├── poissoninput.py │ ├── spikegeneratorgroup.py │ └── timedarray.py ├── memory │ ├── .gitignore │ ├── __init__.py │ ├── cythondynamicarray.pyx │ └── dynamicarray.py ├── monitors │ ├── __init__.py │ ├── ratemonitor.py │ ├── spikemonitor.py │ └── statemonitor.py ├── numpy_.py ├── only.py ├── parsing │ ├── __init__.py │ ├── bast.py │ ├── dependencies.py │ ├── expressions.py │ ├── functions.py │ ├── rendering.py │ ├── statements.py │ └── sympytools.py ├── random │ └── __init__.py ├── spatialneuron │ ├── __init__.py │ ├── morphology.py │ ├── mp_ma_40984_gc2.CNG.swc │ └── spatialneuron.py ├── sphinxext │ ├── __init__.py │ ├── briandoc.py │ ├── docscrape.py │ ├── docscrape_sphinx.py │ ├── examplefinder.py │ ├── generate_examples.py │ └── generate_reference.py ├── stateupdaters │ ├── GSL.py │ ├── __init__.py │ ├── base.py │ ├── exact.py │ ├── explicit.py │ └── exponential_euler.py ├── synapses │ ├── .gitignore │ ├── __init__.py │ ├── cythonspikequeue.pyx │ ├── parse_synaptic_generator_syntax.py │ ├── spikequeue.cpp │ ├── spikequeue.h │ ├── spikequeue.py │ ├── stdint_compat.h │ └── synapses.py ├── tests │ ├── .gitignore │ ├── __init__.py │ ├── data │ │ └── python_spikequeue_test_network_test_store_restore_named.pkl │ ├── features │ │ ├── __init__.py │ │ ├── base.py │ │ ├── input.py │ │ ├── monitors.py │ │ ├── neurongroup.py │ │ ├── speed.py │ │ └── synapses.py │ ├── func_def_cpp.cpp │ ├── func_def_cpp.h │ ├── func_def_cython.pxd │ ├── func_def_cython.pyx │ ├── pytest.ini │ ├── rallpack_data │ │ ├── README │ │ ├── ref_axon.0.neuron │ │ ├── ref_axon.x.neuron │ │ ├── ref_branch.0 │ │ ├── ref_branch.x │ │ ├── ref_cable.0 │ │ └── ref_cable.x │ ├── test_GSL.py │ ├── test_base.py │ ├── test_clocks.py │ ├── test_codegen.py │ ├── test_codestrings.py │ ├── test_complex_examples.py │ ├── test_cpp_standalone.py │ ├── test_devices.py │ ├── test_equations.py │ ├── test_functions.py │ ├── test_logger.py │ ├── test_memory.py │ ├── test_monitor.py │ ├── test_morphology.py │ ├── test_namespaces.py │ ├── test_network.py │ ├── test_neurongroup.py │ ├── test_numpy_codegen.py │ ├── test_parsing.py │ ├── test_poissongroup.py │ ├── test_poissoninput.py │ ├── test_preferences.py │ ├── test_refractory.py │ ├── test_spatialneuron.py │ ├── test_spikegenerator.py │ ├── test_spikequeue.py │ ├── test_stateupdaters.py │ ├── test_subgroup.py │ ├── test_synapses.py │ ├── test_templates │ │ ├── __init__.py │ │ ├── fake_package_1 │ │ │ ├── __init__.py │ │ │ └── templates │ │ │ │ ├── A.txt │ │ │ │ ├── B.txt │ │ │ │ ├── C.txt │ │ │ │ └── D.txt │ │ ├── fake_package_2 │ │ │ ├── __init__.py │ │ │ └── templates │ │ │ │ ├── A.txt │ │ │ │ └── D.txt │ │ └── test_templates.py │ ├── test_thresholder.py │ ├── test_timedarray.py │ ├── test_units.py │ ├── test_utils.py │ ├── test_variables.py │ └── utils.py ├── units │ ├── __init__.py │ ├── allunits.py │ ├── constants.py │ ├── fundamentalunits.py │ ├── stdunits.py │ └── unitsafefunctions.py └── utils │ ├── __init__.py │ ├── arrays.py │ ├── caching.py │ ├── environment.py │ ├── filelock.py │ ├── filetools.py │ ├── logger.py │ ├── stringtools.py │ └── topsort.py ├── codemeta.json ├── dev ├── benchmarks │ ├── .gitignore │ ├── benchmark_spikequeue.py │ ├── compare_to_brian1.py │ ├── openmp │ │ ├── CUBA_standalone.py │ │ ├── STDP_standalone.py │ │ ├── example_standalone.py │ │ ├── example_standalone_bis.py │ │ ├── test_openmp_1.py │ │ ├── test_openmp_2.py │ │ ├── test_openmp_3.py │ │ └── test_openmp_4.py │ ├── plot_synapse_creation.py │ ├── processify.py │ ├── synapse_creation.py │ ├── synapse_creation_brian1.py │ └── unit_system.py ├── continuous-integration │ ├── preferences_for_32_bit │ ├── run_simple_test.py │ ├── run_test_suite.py │ └── update_zenodo_swh.py ├── jenkins │ ├── pylint.rc │ ├── run_pylint.sh │ └── test_brian2.sh ├── notes_on_passing_variables_to_templates.txt └── tools │ ├── .gitignore │ ├── docs │ ├── build_dash_docset.py │ ├── build_html_brian2.py │ ├── build_tutorials.py │ ├── create_multicompartment_diagrams.py │ ├── create_multicompartment_trees.py │ ├── quick_rebuild_html_brian2.py │ └── run_doctests.py │ ├── first_commit.sh │ ├── release │ └── release.py │ ├── repo_stats.py │ ├── run_examples.py │ ├── run_feature_tests.py │ ├── run_speed_tests.py │ ├── run_tests.py │ ├── run_tests_long_and_standalone.py │ ├── run_tests_standalone.py │ ├── run_tests_standalone_with_openmp.py │ ├── static_codegen │ ├── units.py │ └── units_template.py │ ├── tests │ ├── run_tests_cython.py │ ├── run_tests_cython_long.py │ ├── run_tests_numpy.py │ └── run_tests_numpy_long.py │ └── windows_build_inplace.py ├── docker ├── Dockerfile └── README.md ├── docs_sphinx ├── .gitignore ├── _static │ ├── .gitignore │ └── brian-logo.png ├── advanced │ ├── custom_events.pdf │ ├── custom_events.rst │ ├── custom_events.svg │ ├── functions.rst │ ├── how_brian_works.rst │ ├── index.rst │ ├── interface.rst │ ├── logging.rst │ ├── namespaces.rst │ ├── preferences.rst │ ├── random.rst │ ├── scheduling.rst │ └── state_update.rst ├── conf.py ├── conftest.py ├── developer │ ├── GSL.rst │ ├── codegen.rst │ ├── codegen_code_paths.png │ ├── codegen_code_paths.pptx │ ├── devices.rst │ ├── equations_namespaces.rst │ ├── functions.rst │ ├── guidelines │ │ ├── defensive_programming.rst │ │ ├── documentation.rst │ │ ├── index.rst │ │ ├── logging.rst │ │ ├── representation.rst │ │ ├── style.rst │ │ ├── testing.rst │ │ └── workflow.rst │ ├── index.rst │ ├── oldcodegen.rst │ ├── openmp.rst │ ├── preferences.rst │ ├── standalone.rst │ ├── units.rst │ └── variables_indices.rst ├── index.rst ├── introduction │ ├── brian1_to_2 │ │ ├── brian1hears_bridge.rst │ │ ├── container.rst │ │ ├── index.rst │ │ ├── inputs.rst │ │ ├── library.rst │ │ ├── monitors.rst │ │ ├── multicompartmental.rst │ │ ├── networks_and_clocks.rst │ │ ├── neurongroup.rst │ │ ├── preferences.rst │ │ └── synapses.rst │ ├── changes.rst │ ├── code_of_conduct.rst │ ├── compatibility.rst │ ├── index.rst │ ├── install.rst │ ├── known_issues.rst │ ├── release_notes.rst │ ├── scripts.rst │ └── support.rst └── user │ ├── computation.rst │ ├── converting_from_integrated_form.rst │ ├── equations.rst │ ├── images │ ├── cylinder.pdf │ ├── cylinder.svg │ ├── function_plot.png │ ├── morphology_deterministic_coords.png │ ├── morphology_random_section_1.png │ ├── morphology_random_section_2.png │ ├── morphology_random_section_3.png │ ├── morphology_random_section_compartment_1.png │ ├── morphology_random_section_compartment_2.png │ ├── morphology_random_section_compartment_3.png │ ├── section.pdf │ ├── section.svg │ ├── soma.pdf │ └── soma.svg │ ├── import.rst │ ├── index.rst │ ├── input.rst │ ├── models.rst │ ├── multicompartmental.rst │ ├── numerical_integration.rst │ ├── plotting_functions.rst │ ├── recording.rst │ ├── refractoriness.rst │ ├── running.rst │ ├── synapses.rst │ └── units.rst ├── examples ├── .gitignore ├── COBAHH.py ├── CUBA.py ├── IF_curve_Hodgkin_Huxley.py ├── IF_curve_LIF.py ├── adaptive_threshold.py ├── advanced │ ├── COBAHH_approximated.py │ ├── Ornstein_Uhlenbeck.py │ ├── compare_GSL_to_conventional.py │ ├── custom_events.py │ ├── exprel_function.py │ ├── float_32_64_benchmark.py │ ├── modelfitting_sbi.py │ ├── opencv_movie.py │ └── stochastic_odes.py ├── compartmental │ ├── bipolar_cell.py │ ├── bipolar_with_inputs.py │ ├── bipolar_with_inputs2.py │ ├── cylinder.py │ ├── hh_with_spikes.py │ ├── hodgkin_huxley_1952.py │ ├── infinite_cable.py │ ├── lfp.py │ ├── morphotest.py │ ├── rall.py │ └── spike_initiation.py ├── coupled_oscillators.py ├── frompapers │ ├── .gitignore │ ├── Brette_2004.py │ ├── Brette_2012 │ │ ├── Fig1.py │ │ ├── Fig3AB.py │ │ ├── Fig3CF.py │ │ ├── Fig4.py │ │ ├── Fig5A.py │ │ ├── README.txt │ │ └── params.py │ ├── Brette_Gerstner_2005.py │ ├── Brette_Guigon_2003.py │ ├── Brunel_2000.py │ ├── Brunel_Hakim_1999.py │ ├── Brunel_Wang_2001.py │ ├── Clopath_et_al_2010_homeostasis.py │ ├── Clopath_et_al_2010_no_homeostasis.py │ ├── Destexhe_et_al_1998.py │ ├── Diehl_Cook_2015.py │ ├── Diesmann_et_al_1999.py │ ├── Graupner_Brunel_2012.py │ ├── Hindmarsh_Rose_1984.py │ ├── Izhikevich_2003.py │ ├── Izhikevich_2007.py │ ├── Jansen_Rit_1995_single_column.py │ ├── Kremer_et_al_2011_barrel_cortex.py │ ├── Maass_Natschlaeger_Markram_2002.py │ ├── Morris_Lecar_1981.py │ ├── Naud_et_al_2008_adex_firing_patterns.py │ ├── Nicola_Clopath_2017.py │ ├── Platkiewicz_Brette_2011.py │ ├── Rossant_et_al_2011bis.py │ ├── Rothman_Manis_2003.py │ ├── Spreizer_et_al_2019 │ │ ├── Spreizer_et_al_2019.py │ │ ├── perlin1.npy │ │ ├── perlin2.npy │ │ ├── perlin3.npy │ │ ├── perlin4.npy │ │ └── perlin5.npy │ ├── Stimberg_et_al_2018 │ │ ├── README.md │ │ ├── example_1_COBA.py │ │ ├── example_2_gchi_astrocyte.py │ │ ├── example_3_io_synapse.py │ │ ├── example_4_rsmean.py │ │ ├── example_4_synrel.py │ │ ├── example_5_astro_ring.py │ │ ├── example_6_COBA_with_astro.py │ │ ├── figures.mplstyle │ │ └── plot_utils.py │ ├── Stimberg_et_al_2019 │ │ ├── example_3_bisection.py │ │ └── example_3_bisection_standalone.py │ ├── Sturzl_et_al_2000.py │ ├── Tetzlaff_2015.py │ ├── Touboul_Brette_2008.py │ ├── Tsodyks_Pawelzik_Markram_1998.py │ ├── Tsodyks_Uziel_Markram_2000.py │ ├── Vogels_et_al_2011.py │ ├── Wang_2002.py │ └── Wang_Buszaki_1996.py ├── multiprocessing │ ├── 01_using_cython.py │ ├── 02_using_standalone.py │ └── 03_standalone_joblib.py ├── network_operation_stop.py ├── non_reliability.py ├── phase_locking.py ├── reliability.py ├── standalone │ ├── .gitignore │ ├── STDP_standalone.py │ ├── cuba_openmp.py │ ├── simple_case.py │ ├── simple_case_build.py │ ├── standalone_multiple_processes.py │ └── standalone_multiplerun.py └── synapses │ ├── STDP.py │ ├── continuous_interaction.py │ ├── efficient_gaussian_connectivity.py │ ├── gapjunctions.py │ ├── homeostatic_stdp_at_inhibitory_synapes.py │ ├── jeffress.py │ ├── licklider.py │ ├── nonlinear.py │ ├── spatial_connections.py │ ├── spike_based_homeostasis.py │ ├── state_variables.py │ └── synapses.py ├── pyproject.toml ├── rtd-requirements.txt ├── setup.cfg ├── setup.py ├── tutorials ├── 1-intro-to-brian-neurons.ipynb ├── 2-intro-to-brian-synapses.ipynb ├── 3-intro-to-brian-simulations.ipynb └── brian.png └── versions.md /.codemeta/codemeta_base.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/.codemeta/codemeta_base.json -------------------------------------------------------------------------------- /.codemeta/create_codemeta.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/.codemeta/create_codemeta.py -------------------------------------------------------------------------------- /.coveragerc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/.coveragerc -------------------------------------------------------------------------------- /.devcontainer/Dockerfile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/.devcontainer/Dockerfile -------------------------------------------------------------------------------- /.devcontainer/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/.devcontainer/README.md -------------------------------------------------------------------------------- /.devcontainer/dev-requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/.devcontainer/dev-requirements.txt -------------------------------------------------------------------------------- /.devcontainer/devcontainer.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/.devcontainer/devcontainer.json -------------------------------------------------------------------------------- /.git-blame-ignore-revs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/.git-blame-ignore-revs -------------------------------------------------------------------------------- /.git_archival.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/.git_archival.txt -------------------------------------------------------------------------------- /.gitattributes: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/.gitattributes -------------------------------------------------------------------------------- /.github/dependabot.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/.github/dependabot.yml -------------------------------------------------------------------------------- /.github/workflows/post_release_updates.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/.github/workflows/post_release_updates.yml -------------------------------------------------------------------------------- /.github/workflows/publish.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/.github/workflows/publish.yml -------------------------------------------------------------------------------- /.github/workflows/static_analysis.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/.github/workflows/static_analysis.yml -------------------------------------------------------------------------------- /.github/workflows/test_latest.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/.github/workflows/test_latest.yml -------------------------------------------------------------------------------- /.github/workflows/testsuite.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/.github/workflows/testsuite.yml -------------------------------------------------------------------------------- /.github/workflows/update-spec-0-deps.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/.github/workflows/update-spec-0-deps.yaml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/.gitignore -------------------------------------------------------------------------------- /.gitmodules: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/.gitmodules -------------------------------------------------------------------------------- /.pre-commit-config.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/.pre-commit-config.yaml -------------------------------------------------------------------------------- /.readthedocs.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/.readthedocs.yaml -------------------------------------------------------------------------------- /AUTHORS: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/AUTHORS -------------------------------------------------------------------------------- /CITATION.cff: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/CITATION.cff -------------------------------------------------------------------------------- /CITATION.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/CITATION.md -------------------------------------------------------------------------------- /CODE_OF_CONDUCT.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/CODE_OF_CONDUCT.md -------------------------------------------------------------------------------- /CONTRIBUTORS: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/CONTRIBUTORS -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/LICENSE -------------------------------------------------------------------------------- /MANIFEST.in: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/MANIFEST.in -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/README.md -------------------------------------------------------------------------------- /brian2/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/__init__.py -------------------------------------------------------------------------------- /brian2/codegen/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/__init__.py -------------------------------------------------------------------------------- /brian2/codegen/_prefs.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/_prefs.py -------------------------------------------------------------------------------- /brian2/codegen/codeobject.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/codeobject.py -------------------------------------------------------------------------------- /brian2/codegen/cpp_prefs.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/cpp_prefs.py -------------------------------------------------------------------------------- /brian2/codegen/generators/GSL_generator.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/generators/GSL_generator.py -------------------------------------------------------------------------------- /brian2/codegen/generators/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/generators/__init__.py -------------------------------------------------------------------------------- /brian2/codegen/generators/base.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/generators/base.py -------------------------------------------------------------------------------- /brian2/codegen/generators/cpp_generator.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/generators/cpp_generator.py -------------------------------------------------------------------------------- /brian2/codegen/generators/cython_generator.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/generators/cython_generator.py -------------------------------------------------------------------------------- /brian2/codegen/generators/numpy_generator.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/generators/numpy_generator.py -------------------------------------------------------------------------------- /brian2/codegen/get_cpu_flags.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/get_cpu_flags.py -------------------------------------------------------------------------------- /brian2/codegen/optimisation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/optimisation.py -------------------------------------------------------------------------------- /brian2/codegen/permutation_analysis.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/permutation_analysis.py -------------------------------------------------------------------------------- /brian2/codegen/runtime/GSLcython_rt/GSLcython_rt.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/runtime/GSLcython_rt/GSLcython_rt.py -------------------------------------------------------------------------------- /brian2/codegen/runtime/GSLcython_rt/__init__.py: -------------------------------------------------------------------------------- 1 | from .GSLcython_rt import * 2 | -------------------------------------------------------------------------------- /brian2/codegen/runtime/GSLcython_rt/templates/stateupdate.pyx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/runtime/GSLcython_rt/templates/stateupdate.pyx -------------------------------------------------------------------------------- /brian2/codegen/runtime/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/runtime/__init__.py -------------------------------------------------------------------------------- /brian2/codegen/runtime/cython_rt/__init__.py: -------------------------------------------------------------------------------- 1 | from .cython_rt import * 2 | -------------------------------------------------------------------------------- /brian2/codegen/runtime/cython_rt/cython_rt.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/runtime/cython_rt/cython_rt.py -------------------------------------------------------------------------------- /brian2/codegen/runtime/cython_rt/extension_manager.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/runtime/cython_rt/extension_manager.py -------------------------------------------------------------------------------- /brian2/codegen/runtime/cython_rt/templates/common_group.pyx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/runtime/cython_rt/templates/common_group.pyx -------------------------------------------------------------------------------- /brian2/codegen/runtime/cython_rt/templates/group_get_indices.pyx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/runtime/cython_rt/templates/group_get_indices.pyx -------------------------------------------------------------------------------- /brian2/codegen/runtime/cython_rt/templates/group_variable_get.pyx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/runtime/cython_rt/templates/group_variable_get.pyx -------------------------------------------------------------------------------- /brian2/codegen/runtime/cython_rt/templates/group_variable_get_conditional.pyx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/runtime/cython_rt/templates/group_variable_get_conditional.pyx -------------------------------------------------------------------------------- /brian2/codegen/runtime/cython_rt/templates/group_variable_set.pyx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/runtime/cython_rt/templates/group_variable_set.pyx -------------------------------------------------------------------------------- /brian2/codegen/runtime/cython_rt/templates/group_variable_set_conditional.pyx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/runtime/cython_rt/templates/group_variable_set_conditional.pyx -------------------------------------------------------------------------------- /brian2/codegen/runtime/cython_rt/templates/ratemonitor.pyx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/runtime/cython_rt/templates/ratemonitor.pyx -------------------------------------------------------------------------------- /brian2/codegen/runtime/cython_rt/templates/reset.pyx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/runtime/cython_rt/templates/reset.pyx -------------------------------------------------------------------------------- /brian2/codegen/runtime/cython_rt/templates/spatialstateupdate.pyx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/runtime/cython_rt/templates/spatialstateupdate.pyx -------------------------------------------------------------------------------- /brian2/codegen/runtime/cython_rt/templates/spikegenerator.pyx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/runtime/cython_rt/templates/spikegenerator.pyx -------------------------------------------------------------------------------- /brian2/codegen/runtime/cython_rt/templates/spikemonitor.pyx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/runtime/cython_rt/templates/spikemonitor.pyx -------------------------------------------------------------------------------- /brian2/codegen/runtime/cython_rt/templates/statemonitor.pyx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/runtime/cython_rt/templates/statemonitor.pyx -------------------------------------------------------------------------------- /brian2/codegen/runtime/cython_rt/templates/stateupdate.pyx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/runtime/cython_rt/templates/stateupdate.pyx -------------------------------------------------------------------------------- /brian2/codegen/runtime/cython_rt/templates/summed_variable.pyx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/runtime/cython_rt/templates/summed_variable.pyx -------------------------------------------------------------------------------- /brian2/codegen/runtime/cython_rt/templates/synapses.pyx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/runtime/cython_rt/templates/synapses.pyx -------------------------------------------------------------------------------- /brian2/codegen/runtime/cython_rt/templates/synapses_create_array.pyx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/runtime/cython_rt/templates/synapses_create_array.pyx -------------------------------------------------------------------------------- /brian2/codegen/runtime/cython_rt/templates/synapses_create_generator.pyx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/runtime/cython_rt/templates/synapses_create_generator.pyx -------------------------------------------------------------------------------- /brian2/codegen/runtime/cython_rt/templates/synapses_push_spikes.pyx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/runtime/cython_rt/templates/synapses_push_spikes.pyx -------------------------------------------------------------------------------- /brian2/codegen/runtime/cython_rt/templates/threshold.pyx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/runtime/cython_rt/templates/threshold.pyx -------------------------------------------------------------------------------- /brian2/codegen/runtime/numpy_rt/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/runtime/numpy_rt/__init__.py -------------------------------------------------------------------------------- /brian2/codegen/runtime/numpy_rt/numpy_rt.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/runtime/numpy_rt/numpy_rt.py -------------------------------------------------------------------------------- /brian2/codegen/runtime/numpy_rt/templates/common_group.py_: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/runtime/numpy_rt/templates/common_group.py_ -------------------------------------------------------------------------------- /brian2/codegen/runtime/numpy_rt/templates/group_get_indices.py_: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/runtime/numpy_rt/templates/group_get_indices.py_ -------------------------------------------------------------------------------- /brian2/codegen/runtime/numpy_rt/templates/group_variable_get.py_: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/runtime/numpy_rt/templates/group_variable_get.py_ -------------------------------------------------------------------------------- /brian2/codegen/runtime/numpy_rt/templates/group_variable_get_conditional.py_: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/runtime/numpy_rt/templates/group_variable_get_conditional.py_ -------------------------------------------------------------------------------- /brian2/codegen/runtime/numpy_rt/templates/group_variable_set.py_: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/runtime/numpy_rt/templates/group_variable_set.py_ -------------------------------------------------------------------------------- /brian2/codegen/runtime/numpy_rt/templates/group_variable_set_conditional.py_: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/runtime/numpy_rt/templates/group_variable_set_conditional.py_ -------------------------------------------------------------------------------- /brian2/codegen/runtime/numpy_rt/templates/ratemonitor.py_: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/runtime/numpy_rt/templates/ratemonitor.py_ -------------------------------------------------------------------------------- /brian2/codegen/runtime/numpy_rt/templates/reset.py_: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/runtime/numpy_rt/templates/reset.py_ -------------------------------------------------------------------------------- /brian2/codegen/runtime/numpy_rt/templates/spatialstateupdate.py_: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/runtime/numpy_rt/templates/spatialstateupdate.py_ -------------------------------------------------------------------------------- /brian2/codegen/runtime/numpy_rt/templates/spikegenerator.py_: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/runtime/numpy_rt/templates/spikegenerator.py_ -------------------------------------------------------------------------------- /brian2/codegen/runtime/numpy_rt/templates/spikemonitor.py_: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/runtime/numpy_rt/templates/spikemonitor.py_ -------------------------------------------------------------------------------- /brian2/codegen/runtime/numpy_rt/templates/statemonitor.py_: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/runtime/numpy_rt/templates/statemonitor.py_ -------------------------------------------------------------------------------- /brian2/codegen/runtime/numpy_rt/templates/stateupdate.py_: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/runtime/numpy_rt/templates/stateupdate.py_ -------------------------------------------------------------------------------- /brian2/codegen/runtime/numpy_rt/templates/summed_variable.py_: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/runtime/numpy_rt/templates/summed_variable.py_ -------------------------------------------------------------------------------- /brian2/codegen/runtime/numpy_rt/templates/synapses.py_: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/runtime/numpy_rt/templates/synapses.py_ -------------------------------------------------------------------------------- /brian2/codegen/runtime/numpy_rt/templates/synapses_create_array.py_: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/runtime/numpy_rt/templates/synapses_create_array.py_ -------------------------------------------------------------------------------- /brian2/codegen/runtime/numpy_rt/templates/synapses_create_generator.py_: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/runtime/numpy_rt/templates/synapses_create_generator.py_ -------------------------------------------------------------------------------- /brian2/codegen/runtime/numpy_rt/templates/synapses_push_spikes.py_: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/runtime/numpy_rt/templates/synapses_push_spikes.py_ -------------------------------------------------------------------------------- /brian2/codegen/runtime/numpy_rt/templates/threshold.py_: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/runtime/numpy_rt/templates/threshold.py_ -------------------------------------------------------------------------------- /brian2/codegen/statements.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/statements.py -------------------------------------------------------------------------------- /brian2/codegen/targets.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/targets.py -------------------------------------------------------------------------------- /brian2/codegen/templates.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/templates.py -------------------------------------------------------------------------------- /brian2/codegen/translation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/codegen/translation.py -------------------------------------------------------------------------------- /brian2/conftest.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/conftest.py -------------------------------------------------------------------------------- /brian2/core/.gitignore: -------------------------------------------------------------------------------- 1 | /test_prefs 2 | -------------------------------------------------------------------------------- /brian2/core/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/core/__init__.py -------------------------------------------------------------------------------- /brian2/core/base.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/core/base.py -------------------------------------------------------------------------------- /brian2/core/clocks.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/core/clocks.py -------------------------------------------------------------------------------- /brian2/core/core_preferences.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/core/core_preferences.py -------------------------------------------------------------------------------- /brian2/core/functions.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/core/functions.py -------------------------------------------------------------------------------- /brian2/core/magic.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/core/magic.py -------------------------------------------------------------------------------- /brian2/core/names.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/core/names.py -------------------------------------------------------------------------------- /brian2/core/namespace.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/core/namespace.py -------------------------------------------------------------------------------- /brian2/core/network.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/core/network.py -------------------------------------------------------------------------------- /brian2/core/operations.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/core/operations.py -------------------------------------------------------------------------------- /brian2/core/preferences.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/core/preferences.py -------------------------------------------------------------------------------- /brian2/core/spikesource.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/core/spikesource.py -------------------------------------------------------------------------------- /brian2/core/tracking.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/core/tracking.py -------------------------------------------------------------------------------- /brian2/core/variables.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/core/variables.py -------------------------------------------------------------------------------- /brian2/devices/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/devices/__init__.py -------------------------------------------------------------------------------- /brian2/devices/cpp_standalone/GSLcodeobject.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/devices/cpp_standalone/GSLcodeobject.py -------------------------------------------------------------------------------- /brian2/devices/cpp_standalone/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/devices/cpp_standalone/__init__.py -------------------------------------------------------------------------------- /brian2/devices/cpp_standalone/brianlib/clocks.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/devices/cpp_standalone/brianlib/clocks.h -------------------------------------------------------------------------------- /brian2/devices/cpp_standalone/brianlib/common_math.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/devices/cpp_standalone/brianlib/common_math.h -------------------------------------------------------------------------------- /brian2/devices/cpp_standalone/brianlib/dynamic_array.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/devices/cpp_standalone/brianlib/dynamic_array.h -------------------------------------------------------------------------------- /brian2/devices/cpp_standalone/codeobject.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/devices/cpp_standalone/codeobject.py -------------------------------------------------------------------------------- /brian2/devices/cpp_standalone/device.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/devices/cpp_standalone/device.py -------------------------------------------------------------------------------- /brian2/devices/cpp_standalone/templates/common_group.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/devices/cpp_standalone/templates/common_group.cpp -------------------------------------------------------------------------------- /brian2/devices/cpp_standalone/templates/common_synapses.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/devices/cpp_standalone/templates/common_synapses.cpp -------------------------------------------------------------------------------- /brian2/devices/cpp_standalone/templates/group_variable_set.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/devices/cpp_standalone/templates/group_variable_set.cpp -------------------------------------------------------------------------------- /brian2/devices/cpp_standalone/templates/group_variable_set_conditional.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/devices/cpp_standalone/templates/group_variable_set_conditional.cpp -------------------------------------------------------------------------------- /brian2/devices/cpp_standalone/templates/main.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/devices/cpp_standalone/templates/main.cpp -------------------------------------------------------------------------------- /brian2/devices/cpp_standalone/templates/makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/devices/cpp_standalone/templates/makefile -------------------------------------------------------------------------------- /brian2/devices/cpp_standalone/templates/network.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/devices/cpp_standalone/templates/network.cpp -------------------------------------------------------------------------------- /brian2/devices/cpp_standalone/templates/objects.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/devices/cpp_standalone/templates/objects.cpp -------------------------------------------------------------------------------- /brian2/devices/cpp_standalone/templates/ratemonitor.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/devices/cpp_standalone/templates/ratemonitor.cpp -------------------------------------------------------------------------------- /brian2/devices/cpp_standalone/templates/reset.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/devices/cpp_standalone/templates/reset.cpp -------------------------------------------------------------------------------- /brian2/devices/cpp_standalone/templates/run.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/devices/cpp_standalone/templates/run.cpp -------------------------------------------------------------------------------- /brian2/devices/cpp_standalone/templates/spatialstateupdate.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/devices/cpp_standalone/templates/spatialstateupdate.cpp -------------------------------------------------------------------------------- /brian2/devices/cpp_standalone/templates/spikegenerator.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/devices/cpp_standalone/templates/spikegenerator.cpp -------------------------------------------------------------------------------- /brian2/devices/cpp_standalone/templates/spikemonitor.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/devices/cpp_standalone/templates/spikemonitor.cpp -------------------------------------------------------------------------------- /brian2/devices/cpp_standalone/templates/statemonitor.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/devices/cpp_standalone/templates/statemonitor.cpp -------------------------------------------------------------------------------- /brian2/devices/cpp_standalone/templates/stateupdate.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/devices/cpp_standalone/templates/stateupdate.cpp -------------------------------------------------------------------------------- /brian2/devices/cpp_standalone/templates/summed_variable.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/devices/cpp_standalone/templates/summed_variable.cpp -------------------------------------------------------------------------------- /brian2/devices/cpp_standalone/templates/synapses.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/devices/cpp_standalone/templates/synapses.cpp -------------------------------------------------------------------------------- /brian2/devices/cpp_standalone/templates/synapses_classes.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/devices/cpp_standalone/templates/synapses_classes.cpp -------------------------------------------------------------------------------- /brian2/devices/cpp_standalone/templates/synapses_create_array.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/devices/cpp_standalone/templates/synapses_create_array.cpp -------------------------------------------------------------------------------- /brian2/devices/cpp_standalone/templates/synapses_create_generator.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/devices/cpp_standalone/templates/synapses_create_generator.cpp -------------------------------------------------------------------------------- /brian2/devices/cpp_standalone/templates/synapses_push_spikes.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/devices/cpp_standalone/templates/synapses_push_spikes.cpp -------------------------------------------------------------------------------- /brian2/devices/cpp_standalone/templates/threshold.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/devices/cpp_standalone/templates/threshold.cpp -------------------------------------------------------------------------------- /brian2/devices/cpp_standalone/templates/win_makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/devices/cpp_standalone/templates/win_makefile -------------------------------------------------------------------------------- /brian2/devices/cpp_standalone/templates_GSL/stateupdate.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/devices/cpp_standalone/templates_GSL/stateupdate.cpp -------------------------------------------------------------------------------- /brian2/devices/device.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/devices/device.py -------------------------------------------------------------------------------- /brian2/equations/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/equations/__init__.py -------------------------------------------------------------------------------- /brian2/equations/codestrings.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/equations/codestrings.py -------------------------------------------------------------------------------- /brian2/equations/equations.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/equations/equations.py -------------------------------------------------------------------------------- /brian2/equations/refractory.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/equations/refractory.py -------------------------------------------------------------------------------- /brian2/equations/unitcheck.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/equations/unitcheck.py -------------------------------------------------------------------------------- /brian2/groups/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/groups/__init__.py -------------------------------------------------------------------------------- /brian2/groups/group.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/groups/group.py -------------------------------------------------------------------------------- /brian2/groups/neurongroup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/groups/neurongroup.py -------------------------------------------------------------------------------- /brian2/groups/subgroup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/groups/subgroup.py -------------------------------------------------------------------------------- /brian2/hears.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/hears.py -------------------------------------------------------------------------------- /brian2/importexport/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/importexport/__init__.py -------------------------------------------------------------------------------- /brian2/importexport/dictlike.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/importexport/dictlike.py -------------------------------------------------------------------------------- /brian2/importexport/importexport.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/importexport/importexport.py -------------------------------------------------------------------------------- /brian2/input/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/input/__init__.py -------------------------------------------------------------------------------- /brian2/input/binomial.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/input/binomial.py -------------------------------------------------------------------------------- /brian2/input/poissongroup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/input/poissongroup.py -------------------------------------------------------------------------------- /brian2/input/poissoninput.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/input/poissoninput.py -------------------------------------------------------------------------------- /brian2/input/spikegeneratorgroup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/input/spikegeneratorgroup.py -------------------------------------------------------------------------------- /brian2/input/timedarray.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/input/timedarray.py -------------------------------------------------------------------------------- /brian2/memory/.gitignore: -------------------------------------------------------------------------------- 1 | cythondynamicarray.cpp 2 | -------------------------------------------------------------------------------- /brian2/memory/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /brian2/memory/cythondynamicarray.pyx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/memory/cythondynamicarray.pyx -------------------------------------------------------------------------------- /brian2/memory/dynamicarray.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/memory/dynamicarray.py -------------------------------------------------------------------------------- /brian2/monitors/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/monitors/__init__.py -------------------------------------------------------------------------------- /brian2/monitors/ratemonitor.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/monitors/ratemonitor.py -------------------------------------------------------------------------------- /brian2/monitors/spikemonitor.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/monitors/spikemonitor.py -------------------------------------------------------------------------------- /brian2/monitors/statemonitor.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/monitors/statemonitor.py -------------------------------------------------------------------------------- /brian2/numpy_.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/numpy_.py -------------------------------------------------------------------------------- /brian2/only.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/only.py -------------------------------------------------------------------------------- /brian2/parsing/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /brian2/parsing/bast.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/parsing/bast.py -------------------------------------------------------------------------------- /brian2/parsing/dependencies.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/parsing/dependencies.py -------------------------------------------------------------------------------- /brian2/parsing/expressions.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/parsing/expressions.py -------------------------------------------------------------------------------- /brian2/parsing/functions.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/parsing/functions.py -------------------------------------------------------------------------------- /brian2/parsing/rendering.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/parsing/rendering.py -------------------------------------------------------------------------------- /brian2/parsing/statements.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/parsing/statements.py -------------------------------------------------------------------------------- /brian2/parsing/sympytools.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/parsing/sympytools.py -------------------------------------------------------------------------------- /brian2/random/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /brian2/spatialneuron/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/spatialneuron/__init__.py -------------------------------------------------------------------------------- /brian2/spatialneuron/morphology.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/spatialneuron/morphology.py -------------------------------------------------------------------------------- /brian2/spatialneuron/mp_ma_40984_gc2.CNG.swc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/spatialneuron/mp_ma_40984_gc2.CNG.swc -------------------------------------------------------------------------------- /brian2/spatialneuron/spatialneuron.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/spatialneuron/spatialneuron.py -------------------------------------------------------------------------------- /brian2/sphinxext/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/sphinxext/__init__.py -------------------------------------------------------------------------------- /brian2/sphinxext/briandoc.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/sphinxext/briandoc.py -------------------------------------------------------------------------------- /brian2/sphinxext/docscrape.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/sphinxext/docscrape.py -------------------------------------------------------------------------------- /brian2/sphinxext/docscrape_sphinx.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/sphinxext/docscrape_sphinx.py -------------------------------------------------------------------------------- /brian2/sphinxext/examplefinder.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/sphinxext/examplefinder.py -------------------------------------------------------------------------------- /brian2/sphinxext/generate_examples.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/sphinxext/generate_examples.py -------------------------------------------------------------------------------- /brian2/sphinxext/generate_reference.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/sphinxext/generate_reference.py -------------------------------------------------------------------------------- /brian2/stateupdaters/GSL.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/stateupdaters/GSL.py -------------------------------------------------------------------------------- /brian2/stateupdaters/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/stateupdaters/__init__.py -------------------------------------------------------------------------------- /brian2/stateupdaters/base.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/stateupdaters/base.py -------------------------------------------------------------------------------- /brian2/stateupdaters/exact.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/stateupdaters/exact.py -------------------------------------------------------------------------------- /brian2/stateupdaters/explicit.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/stateupdaters/explicit.py -------------------------------------------------------------------------------- /brian2/stateupdaters/exponential_euler.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/stateupdaters/exponential_euler.py -------------------------------------------------------------------------------- /brian2/synapses/.gitignore: -------------------------------------------------------------------------------- 1 | cythonspikequeue.cpp 2 | -------------------------------------------------------------------------------- /brian2/synapses/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/synapses/__init__.py -------------------------------------------------------------------------------- /brian2/synapses/cythonspikequeue.pyx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/synapses/cythonspikequeue.pyx -------------------------------------------------------------------------------- /brian2/synapses/parse_synaptic_generator_syntax.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/synapses/parse_synaptic_generator_syntax.py -------------------------------------------------------------------------------- /brian2/synapses/spikequeue.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/synapses/spikequeue.cpp -------------------------------------------------------------------------------- /brian2/synapses/spikequeue.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/synapses/spikequeue.h -------------------------------------------------------------------------------- /brian2/synapses/spikequeue.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/synapses/spikequeue.py -------------------------------------------------------------------------------- /brian2/synapses/stdint_compat.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/synapses/stdint_compat.h -------------------------------------------------------------------------------- /brian2/synapses/synapses.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/synapses/synapses.py -------------------------------------------------------------------------------- /brian2/tests/.gitignore: -------------------------------------------------------------------------------- 1 | /brian_preferences 2 | -------------------------------------------------------------------------------- /brian2/tests/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/__init__.py -------------------------------------------------------------------------------- /brian2/tests/data/python_spikequeue_test_network_test_store_restore_named.pkl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/data/python_spikequeue_test_network_test_store_restore_named.pkl -------------------------------------------------------------------------------- /brian2/tests/features/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/features/__init__.py -------------------------------------------------------------------------------- /brian2/tests/features/base.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/features/base.py -------------------------------------------------------------------------------- /brian2/tests/features/input.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/features/input.py -------------------------------------------------------------------------------- /brian2/tests/features/monitors.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/features/monitors.py -------------------------------------------------------------------------------- /brian2/tests/features/neurongroup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/features/neurongroup.py -------------------------------------------------------------------------------- /brian2/tests/features/speed.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/features/speed.py -------------------------------------------------------------------------------- /brian2/tests/features/synapses.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/features/synapses.py -------------------------------------------------------------------------------- /brian2/tests/func_def_cpp.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/func_def_cpp.cpp -------------------------------------------------------------------------------- /brian2/tests/func_def_cpp.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/func_def_cpp.h -------------------------------------------------------------------------------- /brian2/tests/func_def_cython.pxd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/func_def_cython.pxd -------------------------------------------------------------------------------- /brian2/tests/func_def_cython.pyx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/func_def_cython.pyx -------------------------------------------------------------------------------- /brian2/tests/pytest.ini: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/pytest.ini -------------------------------------------------------------------------------- /brian2/tests/rallpack_data/README: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/rallpack_data/README -------------------------------------------------------------------------------- /brian2/tests/rallpack_data/ref_axon.0.neuron: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/rallpack_data/ref_axon.0.neuron -------------------------------------------------------------------------------- /brian2/tests/rallpack_data/ref_axon.x.neuron: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/rallpack_data/ref_axon.x.neuron -------------------------------------------------------------------------------- /brian2/tests/rallpack_data/ref_branch.0: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/rallpack_data/ref_branch.0 -------------------------------------------------------------------------------- /brian2/tests/rallpack_data/ref_branch.x: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/rallpack_data/ref_branch.x -------------------------------------------------------------------------------- /brian2/tests/rallpack_data/ref_cable.0: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/rallpack_data/ref_cable.0 -------------------------------------------------------------------------------- /brian2/tests/rallpack_data/ref_cable.x: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/rallpack_data/ref_cable.x -------------------------------------------------------------------------------- /brian2/tests/test_GSL.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/test_GSL.py -------------------------------------------------------------------------------- /brian2/tests/test_base.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/test_base.py -------------------------------------------------------------------------------- /brian2/tests/test_clocks.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/test_clocks.py -------------------------------------------------------------------------------- /brian2/tests/test_codegen.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/test_codegen.py -------------------------------------------------------------------------------- /brian2/tests/test_codestrings.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/test_codestrings.py -------------------------------------------------------------------------------- /brian2/tests/test_complex_examples.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/test_complex_examples.py -------------------------------------------------------------------------------- /brian2/tests/test_cpp_standalone.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/test_cpp_standalone.py -------------------------------------------------------------------------------- /brian2/tests/test_devices.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/test_devices.py -------------------------------------------------------------------------------- /brian2/tests/test_equations.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/test_equations.py -------------------------------------------------------------------------------- /brian2/tests/test_functions.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/test_functions.py -------------------------------------------------------------------------------- /brian2/tests/test_logger.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/test_logger.py -------------------------------------------------------------------------------- /brian2/tests/test_memory.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/test_memory.py -------------------------------------------------------------------------------- /brian2/tests/test_monitor.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/test_monitor.py -------------------------------------------------------------------------------- /brian2/tests/test_morphology.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/test_morphology.py -------------------------------------------------------------------------------- /brian2/tests/test_namespaces.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/test_namespaces.py -------------------------------------------------------------------------------- /brian2/tests/test_network.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/test_network.py -------------------------------------------------------------------------------- /brian2/tests/test_neurongroup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/test_neurongroup.py -------------------------------------------------------------------------------- /brian2/tests/test_numpy_codegen.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/test_numpy_codegen.py -------------------------------------------------------------------------------- /brian2/tests/test_parsing.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/test_parsing.py -------------------------------------------------------------------------------- /brian2/tests/test_poissongroup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/test_poissongroup.py -------------------------------------------------------------------------------- /brian2/tests/test_poissoninput.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/test_poissoninput.py -------------------------------------------------------------------------------- /brian2/tests/test_preferences.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/test_preferences.py -------------------------------------------------------------------------------- /brian2/tests/test_refractory.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/test_refractory.py -------------------------------------------------------------------------------- /brian2/tests/test_spatialneuron.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/test_spatialneuron.py -------------------------------------------------------------------------------- /brian2/tests/test_spikegenerator.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/test_spikegenerator.py -------------------------------------------------------------------------------- /brian2/tests/test_spikequeue.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/test_spikequeue.py -------------------------------------------------------------------------------- /brian2/tests/test_stateupdaters.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/test_stateupdaters.py -------------------------------------------------------------------------------- /brian2/tests/test_subgroup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/test_subgroup.py -------------------------------------------------------------------------------- /brian2/tests/test_synapses.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/test_synapses.py -------------------------------------------------------------------------------- /brian2/tests/test_templates/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /brian2/tests/test_templates/fake_package_1/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /brian2/tests/test_templates/fake_package_1/templates/A.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/test_templates/fake_package_1/templates/A.txt -------------------------------------------------------------------------------- /brian2/tests/test_templates/fake_package_1/templates/B.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/test_templates/fake_package_1/templates/B.txt -------------------------------------------------------------------------------- /brian2/tests/test_templates/fake_package_1/templates/C.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/test_templates/fake_package_1/templates/C.txt -------------------------------------------------------------------------------- /brian2/tests/test_templates/fake_package_1/templates/D.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/test_templates/fake_package_1/templates/D.txt -------------------------------------------------------------------------------- /brian2/tests/test_templates/fake_package_2/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /brian2/tests/test_templates/fake_package_2/templates/A.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/test_templates/fake_package_2/templates/A.txt -------------------------------------------------------------------------------- /brian2/tests/test_templates/fake_package_2/templates/D.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/test_templates/fake_package_2/templates/D.txt -------------------------------------------------------------------------------- /brian2/tests/test_templates/test_templates.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/test_templates/test_templates.py -------------------------------------------------------------------------------- /brian2/tests/test_thresholder.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/test_thresholder.py -------------------------------------------------------------------------------- /brian2/tests/test_timedarray.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/test_timedarray.py -------------------------------------------------------------------------------- /brian2/tests/test_units.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/test_units.py -------------------------------------------------------------------------------- /brian2/tests/test_utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/test_utils.py -------------------------------------------------------------------------------- /brian2/tests/test_variables.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/test_variables.py -------------------------------------------------------------------------------- /brian2/tests/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/tests/utils.py -------------------------------------------------------------------------------- /brian2/units/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/units/__init__.py -------------------------------------------------------------------------------- /brian2/units/allunits.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/units/allunits.py -------------------------------------------------------------------------------- /brian2/units/constants.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/units/constants.py -------------------------------------------------------------------------------- /brian2/units/fundamentalunits.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/units/fundamentalunits.py -------------------------------------------------------------------------------- /brian2/units/stdunits.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/units/stdunits.py -------------------------------------------------------------------------------- /brian2/units/unitsafefunctions.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/units/unitsafefunctions.py -------------------------------------------------------------------------------- /brian2/utils/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/utils/__init__.py -------------------------------------------------------------------------------- /brian2/utils/arrays.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/utils/arrays.py -------------------------------------------------------------------------------- /brian2/utils/caching.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/utils/caching.py -------------------------------------------------------------------------------- /brian2/utils/environment.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/utils/environment.py -------------------------------------------------------------------------------- /brian2/utils/filelock.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/utils/filelock.py -------------------------------------------------------------------------------- /brian2/utils/filetools.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/utils/filetools.py -------------------------------------------------------------------------------- /brian2/utils/logger.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/utils/logger.py -------------------------------------------------------------------------------- /brian2/utils/stringtools.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/utils/stringtools.py -------------------------------------------------------------------------------- /brian2/utils/topsort.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/brian2/utils/topsort.py -------------------------------------------------------------------------------- /codemeta.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/codemeta.json -------------------------------------------------------------------------------- /dev/benchmarks/.gitignore: -------------------------------------------------------------------------------- 1 | joblib/ 2 | -------------------------------------------------------------------------------- /dev/benchmarks/benchmark_spikequeue.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/dev/benchmarks/benchmark_spikequeue.py -------------------------------------------------------------------------------- /dev/benchmarks/compare_to_brian1.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/dev/benchmarks/compare_to_brian1.py -------------------------------------------------------------------------------- /dev/benchmarks/openmp/CUBA_standalone.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/dev/benchmarks/openmp/CUBA_standalone.py -------------------------------------------------------------------------------- /dev/benchmarks/openmp/STDP_standalone.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/dev/benchmarks/openmp/STDP_standalone.py -------------------------------------------------------------------------------- /dev/benchmarks/openmp/example_standalone.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/dev/benchmarks/openmp/example_standalone.py -------------------------------------------------------------------------------- /dev/benchmarks/openmp/example_standalone_bis.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/dev/benchmarks/openmp/example_standalone_bis.py -------------------------------------------------------------------------------- /dev/benchmarks/openmp/test_openmp_1.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/dev/benchmarks/openmp/test_openmp_1.py -------------------------------------------------------------------------------- /dev/benchmarks/openmp/test_openmp_2.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/dev/benchmarks/openmp/test_openmp_2.py -------------------------------------------------------------------------------- /dev/benchmarks/openmp/test_openmp_3.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/dev/benchmarks/openmp/test_openmp_3.py -------------------------------------------------------------------------------- /dev/benchmarks/openmp/test_openmp_4.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/dev/benchmarks/openmp/test_openmp_4.py -------------------------------------------------------------------------------- /dev/benchmarks/plot_synapse_creation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/dev/benchmarks/plot_synapse_creation.py -------------------------------------------------------------------------------- /dev/benchmarks/processify.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/dev/benchmarks/processify.py -------------------------------------------------------------------------------- /dev/benchmarks/synapse_creation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/dev/benchmarks/synapse_creation.py -------------------------------------------------------------------------------- /dev/benchmarks/synapse_creation_brian1.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/dev/benchmarks/synapse_creation_brian1.py -------------------------------------------------------------------------------- /dev/benchmarks/unit_system.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/dev/benchmarks/unit_system.py -------------------------------------------------------------------------------- /dev/continuous-integration/preferences_for_32_bit: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/dev/continuous-integration/preferences_for_32_bit -------------------------------------------------------------------------------- /dev/continuous-integration/run_simple_test.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/dev/continuous-integration/run_simple_test.py -------------------------------------------------------------------------------- /dev/continuous-integration/run_test_suite.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/dev/continuous-integration/run_test_suite.py -------------------------------------------------------------------------------- /dev/continuous-integration/update_zenodo_swh.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/dev/continuous-integration/update_zenodo_swh.py -------------------------------------------------------------------------------- /dev/jenkins/pylint.rc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/dev/jenkins/pylint.rc -------------------------------------------------------------------------------- /dev/jenkins/run_pylint.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/dev/jenkins/run_pylint.sh -------------------------------------------------------------------------------- /dev/jenkins/test_brian2.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/dev/jenkins/test_brian2.sh -------------------------------------------------------------------------------- /dev/notes_on_passing_variables_to_templates.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/dev/notes_on_passing_variables_to_templates.txt -------------------------------------------------------------------------------- /dev/tools/.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/dev/tools/.gitignore -------------------------------------------------------------------------------- /dev/tools/docs/build_dash_docset.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/dev/tools/docs/build_dash_docset.py -------------------------------------------------------------------------------- /dev/tools/docs/build_html_brian2.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/dev/tools/docs/build_html_brian2.py -------------------------------------------------------------------------------- /dev/tools/docs/build_tutorials.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/dev/tools/docs/build_tutorials.py -------------------------------------------------------------------------------- /dev/tools/docs/create_multicompartment_diagrams.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/dev/tools/docs/create_multicompartment_diagrams.py -------------------------------------------------------------------------------- /dev/tools/docs/create_multicompartment_trees.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/dev/tools/docs/create_multicompartment_trees.py -------------------------------------------------------------------------------- /dev/tools/docs/quick_rebuild_html_brian2.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/dev/tools/docs/quick_rebuild_html_brian2.py -------------------------------------------------------------------------------- /dev/tools/docs/run_doctests.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/dev/tools/docs/run_doctests.py -------------------------------------------------------------------------------- /dev/tools/first_commit.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/dev/tools/first_commit.sh -------------------------------------------------------------------------------- /dev/tools/release/release.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/dev/tools/release/release.py -------------------------------------------------------------------------------- /dev/tools/repo_stats.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/dev/tools/repo_stats.py -------------------------------------------------------------------------------- /dev/tools/run_examples.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/dev/tools/run_examples.py -------------------------------------------------------------------------------- /dev/tools/run_feature_tests.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/dev/tools/run_feature_tests.py -------------------------------------------------------------------------------- /dev/tools/run_speed_tests.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/dev/tools/run_speed_tests.py -------------------------------------------------------------------------------- /dev/tools/run_tests.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/dev/tools/run_tests.py -------------------------------------------------------------------------------- /dev/tools/run_tests_long_and_standalone.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/dev/tools/run_tests_long_and_standalone.py -------------------------------------------------------------------------------- /dev/tools/run_tests_standalone.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/dev/tools/run_tests_standalone.py -------------------------------------------------------------------------------- /dev/tools/run_tests_standalone_with_openmp.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/dev/tools/run_tests_standalone_with_openmp.py -------------------------------------------------------------------------------- /dev/tools/static_codegen/units.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/dev/tools/static_codegen/units.py -------------------------------------------------------------------------------- /dev/tools/static_codegen/units_template.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/dev/tools/static_codegen/units_template.py -------------------------------------------------------------------------------- /dev/tools/tests/run_tests_cython.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/dev/tools/tests/run_tests_cython.py -------------------------------------------------------------------------------- /dev/tools/tests/run_tests_cython_long.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/dev/tools/tests/run_tests_cython_long.py -------------------------------------------------------------------------------- /dev/tools/tests/run_tests_numpy.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/dev/tools/tests/run_tests_numpy.py -------------------------------------------------------------------------------- /dev/tools/tests/run_tests_numpy_long.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/dev/tools/tests/run_tests_numpy_long.py -------------------------------------------------------------------------------- /dev/tools/windows_build_inplace.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/dev/tools/windows_build_inplace.py -------------------------------------------------------------------------------- /docker/Dockerfile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docker/Dockerfile -------------------------------------------------------------------------------- /docker/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docker/README.md -------------------------------------------------------------------------------- /docs_sphinx/.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/.gitignore -------------------------------------------------------------------------------- /docs_sphinx/_static/.gitignore: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /docs_sphinx/_static/brian-logo.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/_static/brian-logo.png -------------------------------------------------------------------------------- /docs_sphinx/advanced/custom_events.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/advanced/custom_events.pdf -------------------------------------------------------------------------------- /docs_sphinx/advanced/custom_events.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/advanced/custom_events.rst -------------------------------------------------------------------------------- /docs_sphinx/advanced/custom_events.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/advanced/custom_events.svg -------------------------------------------------------------------------------- /docs_sphinx/advanced/functions.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/advanced/functions.rst -------------------------------------------------------------------------------- /docs_sphinx/advanced/how_brian_works.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/advanced/how_brian_works.rst -------------------------------------------------------------------------------- /docs_sphinx/advanced/index.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/advanced/index.rst -------------------------------------------------------------------------------- /docs_sphinx/advanced/interface.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/advanced/interface.rst -------------------------------------------------------------------------------- /docs_sphinx/advanced/logging.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/advanced/logging.rst -------------------------------------------------------------------------------- /docs_sphinx/advanced/namespaces.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/advanced/namespaces.rst -------------------------------------------------------------------------------- /docs_sphinx/advanced/preferences.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/advanced/preferences.rst -------------------------------------------------------------------------------- /docs_sphinx/advanced/random.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/advanced/random.rst -------------------------------------------------------------------------------- /docs_sphinx/advanced/scheduling.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/advanced/scheduling.rst -------------------------------------------------------------------------------- /docs_sphinx/advanced/state_update.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/advanced/state_update.rst -------------------------------------------------------------------------------- /docs_sphinx/conf.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/conf.py -------------------------------------------------------------------------------- /docs_sphinx/conftest.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/conftest.py -------------------------------------------------------------------------------- /docs_sphinx/developer/GSL.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/developer/GSL.rst -------------------------------------------------------------------------------- /docs_sphinx/developer/codegen.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/developer/codegen.rst -------------------------------------------------------------------------------- /docs_sphinx/developer/codegen_code_paths.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/developer/codegen_code_paths.png -------------------------------------------------------------------------------- /docs_sphinx/developer/codegen_code_paths.pptx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/developer/codegen_code_paths.pptx -------------------------------------------------------------------------------- /docs_sphinx/developer/devices.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/developer/devices.rst -------------------------------------------------------------------------------- /docs_sphinx/developer/equations_namespaces.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/developer/equations_namespaces.rst -------------------------------------------------------------------------------- /docs_sphinx/developer/functions.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/developer/functions.rst -------------------------------------------------------------------------------- /docs_sphinx/developer/guidelines/defensive_programming.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/developer/guidelines/defensive_programming.rst -------------------------------------------------------------------------------- /docs_sphinx/developer/guidelines/documentation.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/developer/guidelines/documentation.rst -------------------------------------------------------------------------------- /docs_sphinx/developer/guidelines/index.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/developer/guidelines/index.rst -------------------------------------------------------------------------------- /docs_sphinx/developer/guidelines/logging.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/developer/guidelines/logging.rst -------------------------------------------------------------------------------- /docs_sphinx/developer/guidelines/representation.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/developer/guidelines/representation.rst -------------------------------------------------------------------------------- /docs_sphinx/developer/guidelines/style.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/developer/guidelines/style.rst -------------------------------------------------------------------------------- /docs_sphinx/developer/guidelines/testing.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/developer/guidelines/testing.rst -------------------------------------------------------------------------------- /docs_sphinx/developer/guidelines/workflow.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/developer/guidelines/workflow.rst -------------------------------------------------------------------------------- /docs_sphinx/developer/index.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/developer/index.rst -------------------------------------------------------------------------------- /docs_sphinx/developer/oldcodegen.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/developer/oldcodegen.rst -------------------------------------------------------------------------------- /docs_sphinx/developer/openmp.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/developer/openmp.rst -------------------------------------------------------------------------------- /docs_sphinx/developer/preferences.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/developer/preferences.rst -------------------------------------------------------------------------------- /docs_sphinx/developer/standalone.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/developer/standalone.rst -------------------------------------------------------------------------------- /docs_sphinx/developer/units.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/developer/units.rst -------------------------------------------------------------------------------- /docs_sphinx/developer/variables_indices.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/developer/variables_indices.rst -------------------------------------------------------------------------------- /docs_sphinx/index.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/index.rst -------------------------------------------------------------------------------- /docs_sphinx/introduction/brian1_to_2/brian1hears_bridge.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/introduction/brian1_to_2/brian1hears_bridge.rst -------------------------------------------------------------------------------- /docs_sphinx/introduction/brian1_to_2/container.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/introduction/brian1_to_2/container.rst -------------------------------------------------------------------------------- /docs_sphinx/introduction/brian1_to_2/index.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/introduction/brian1_to_2/index.rst -------------------------------------------------------------------------------- /docs_sphinx/introduction/brian1_to_2/inputs.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/introduction/brian1_to_2/inputs.rst -------------------------------------------------------------------------------- /docs_sphinx/introduction/brian1_to_2/library.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/introduction/brian1_to_2/library.rst -------------------------------------------------------------------------------- /docs_sphinx/introduction/brian1_to_2/monitors.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/introduction/brian1_to_2/monitors.rst -------------------------------------------------------------------------------- /docs_sphinx/introduction/brian1_to_2/multicompartmental.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/introduction/brian1_to_2/multicompartmental.rst -------------------------------------------------------------------------------- /docs_sphinx/introduction/brian1_to_2/networks_and_clocks.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/introduction/brian1_to_2/networks_and_clocks.rst -------------------------------------------------------------------------------- /docs_sphinx/introduction/brian1_to_2/neurongroup.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/introduction/brian1_to_2/neurongroup.rst -------------------------------------------------------------------------------- /docs_sphinx/introduction/brian1_to_2/preferences.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/introduction/brian1_to_2/preferences.rst -------------------------------------------------------------------------------- /docs_sphinx/introduction/brian1_to_2/synapses.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/introduction/brian1_to_2/synapses.rst -------------------------------------------------------------------------------- /docs_sphinx/introduction/changes.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/introduction/changes.rst -------------------------------------------------------------------------------- /docs_sphinx/introduction/code_of_conduct.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/introduction/code_of_conduct.rst -------------------------------------------------------------------------------- /docs_sphinx/introduction/compatibility.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/introduction/compatibility.rst -------------------------------------------------------------------------------- /docs_sphinx/introduction/index.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/introduction/index.rst -------------------------------------------------------------------------------- /docs_sphinx/introduction/install.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/introduction/install.rst -------------------------------------------------------------------------------- /docs_sphinx/introduction/known_issues.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/introduction/known_issues.rst -------------------------------------------------------------------------------- /docs_sphinx/introduction/release_notes.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/introduction/release_notes.rst -------------------------------------------------------------------------------- /docs_sphinx/introduction/scripts.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/introduction/scripts.rst -------------------------------------------------------------------------------- /docs_sphinx/introduction/support.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/introduction/support.rst -------------------------------------------------------------------------------- /docs_sphinx/user/computation.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/user/computation.rst -------------------------------------------------------------------------------- /docs_sphinx/user/converting_from_integrated_form.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/user/converting_from_integrated_form.rst -------------------------------------------------------------------------------- /docs_sphinx/user/equations.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/user/equations.rst -------------------------------------------------------------------------------- /docs_sphinx/user/images/cylinder.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/user/images/cylinder.pdf -------------------------------------------------------------------------------- /docs_sphinx/user/images/cylinder.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/user/images/cylinder.svg -------------------------------------------------------------------------------- /docs_sphinx/user/images/function_plot.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/user/images/function_plot.png -------------------------------------------------------------------------------- /docs_sphinx/user/images/morphology_deterministic_coords.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/user/images/morphology_deterministic_coords.png -------------------------------------------------------------------------------- /docs_sphinx/user/images/morphology_random_section_1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/user/images/morphology_random_section_1.png -------------------------------------------------------------------------------- /docs_sphinx/user/images/morphology_random_section_2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/user/images/morphology_random_section_2.png -------------------------------------------------------------------------------- /docs_sphinx/user/images/morphology_random_section_3.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/user/images/morphology_random_section_3.png -------------------------------------------------------------------------------- /docs_sphinx/user/images/morphology_random_section_compartment_1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/user/images/morphology_random_section_compartment_1.png -------------------------------------------------------------------------------- /docs_sphinx/user/images/morphology_random_section_compartment_2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/user/images/morphology_random_section_compartment_2.png -------------------------------------------------------------------------------- /docs_sphinx/user/images/morphology_random_section_compartment_3.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/user/images/morphology_random_section_compartment_3.png -------------------------------------------------------------------------------- /docs_sphinx/user/images/section.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/user/images/section.pdf -------------------------------------------------------------------------------- /docs_sphinx/user/images/section.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/user/images/section.svg -------------------------------------------------------------------------------- /docs_sphinx/user/images/soma.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/user/images/soma.pdf -------------------------------------------------------------------------------- /docs_sphinx/user/images/soma.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/user/images/soma.svg -------------------------------------------------------------------------------- /docs_sphinx/user/import.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/user/import.rst -------------------------------------------------------------------------------- /docs_sphinx/user/index.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/user/index.rst -------------------------------------------------------------------------------- /docs_sphinx/user/input.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/user/input.rst -------------------------------------------------------------------------------- /docs_sphinx/user/models.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/user/models.rst -------------------------------------------------------------------------------- /docs_sphinx/user/multicompartmental.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/user/multicompartmental.rst -------------------------------------------------------------------------------- /docs_sphinx/user/numerical_integration.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/user/numerical_integration.rst -------------------------------------------------------------------------------- /docs_sphinx/user/plotting_functions.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/user/plotting_functions.rst -------------------------------------------------------------------------------- /docs_sphinx/user/recording.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/user/recording.rst -------------------------------------------------------------------------------- /docs_sphinx/user/refractoriness.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/user/refractoriness.rst -------------------------------------------------------------------------------- /docs_sphinx/user/running.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/user/running.rst -------------------------------------------------------------------------------- /docs_sphinx/user/synapses.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/user/synapses.rst -------------------------------------------------------------------------------- /docs_sphinx/user/units.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/docs_sphinx/user/units.rst -------------------------------------------------------------------------------- /examples/.gitignore: -------------------------------------------------------------------------------- 1 | /STDP_standalone 2 | /barrelcortex 3 | /brian_preferences 4 | -------------------------------------------------------------------------------- /examples/COBAHH.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/COBAHH.py -------------------------------------------------------------------------------- /examples/CUBA.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/CUBA.py -------------------------------------------------------------------------------- /examples/IF_curve_Hodgkin_Huxley.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/IF_curve_Hodgkin_Huxley.py -------------------------------------------------------------------------------- /examples/IF_curve_LIF.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/IF_curve_LIF.py -------------------------------------------------------------------------------- /examples/adaptive_threshold.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/adaptive_threshold.py -------------------------------------------------------------------------------- /examples/advanced/COBAHH_approximated.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/advanced/COBAHH_approximated.py -------------------------------------------------------------------------------- /examples/advanced/Ornstein_Uhlenbeck.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/advanced/Ornstein_Uhlenbeck.py -------------------------------------------------------------------------------- /examples/advanced/compare_GSL_to_conventional.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/advanced/compare_GSL_to_conventional.py -------------------------------------------------------------------------------- /examples/advanced/custom_events.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/advanced/custom_events.py -------------------------------------------------------------------------------- /examples/advanced/exprel_function.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/advanced/exprel_function.py -------------------------------------------------------------------------------- /examples/advanced/float_32_64_benchmark.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/advanced/float_32_64_benchmark.py -------------------------------------------------------------------------------- /examples/advanced/modelfitting_sbi.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/advanced/modelfitting_sbi.py -------------------------------------------------------------------------------- /examples/advanced/opencv_movie.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/advanced/opencv_movie.py -------------------------------------------------------------------------------- /examples/advanced/stochastic_odes.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/advanced/stochastic_odes.py -------------------------------------------------------------------------------- /examples/compartmental/bipolar_cell.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/compartmental/bipolar_cell.py -------------------------------------------------------------------------------- /examples/compartmental/bipolar_with_inputs.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/compartmental/bipolar_with_inputs.py -------------------------------------------------------------------------------- /examples/compartmental/bipolar_with_inputs2.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/compartmental/bipolar_with_inputs2.py -------------------------------------------------------------------------------- /examples/compartmental/cylinder.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/compartmental/cylinder.py -------------------------------------------------------------------------------- /examples/compartmental/hh_with_spikes.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/compartmental/hh_with_spikes.py -------------------------------------------------------------------------------- /examples/compartmental/hodgkin_huxley_1952.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/compartmental/hodgkin_huxley_1952.py -------------------------------------------------------------------------------- /examples/compartmental/infinite_cable.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/compartmental/infinite_cable.py -------------------------------------------------------------------------------- /examples/compartmental/lfp.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/compartmental/lfp.py -------------------------------------------------------------------------------- /examples/compartmental/morphotest.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/compartmental/morphotest.py -------------------------------------------------------------------------------- /examples/compartmental/rall.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/compartmental/rall.py -------------------------------------------------------------------------------- /examples/compartmental/spike_initiation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/compartmental/spike_initiation.py -------------------------------------------------------------------------------- /examples/coupled_oscillators.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/coupled_oscillators.py -------------------------------------------------------------------------------- /examples/frompapers/.gitignore: -------------------------------------------------------------------------------- 1 | /barrelcortex 2 | -------------------------------------------------------------------------------- /examples/frompapers/Brette_2004.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Brette_2004.py -------------------------------------------------------------------------------- /examples/frompapers/Brette_2012/Fig1.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Brette_2012/Fig1.py -------------------------------------------------------------------------------- /examples/frompapers/Brette_2012/Fig3AB.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Brette_2012/Fig3AB.py -------------------------------------------------------------------------------- /examples/frompapers/Brette_2012/Fig3CF.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Brette_2012/Fig3CF.py -------------------------------------------------------------------------------- /examples/frompapers/Brette_2012/Fig4.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Brette_2012/Fig4.py -------------------------------------------------------------------------------- /examples/frompapers/Brette_2012/Fig5A.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Brette_2012/Fig5A.py -------------------------------------------------------------------------------- /examples/frompapers/Brette_2012/README.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Brette_2012/README.txt -------------------------------------------------------------------------------- /examples/frompapers/Brette_2012/params.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Brette_2012/params.py -------------------------------------------------------------------------------- /examples/frompapers/Brette_Gerstner_2005.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Brette_Gerstner_2005.py -------------------------------------------------------------------------------- /examples/frompapers/Brette_Guigon_2003.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Brette_Guigon_2003.py -------------------------------------------------------------------------------- /examples/frompapers/Brunel_2000.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Brunel_2000.py -------------------------------------------------------------------------------- /examples/frompapers/Brunel_Hakim_1999.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Brunel_Hakim_1999.py -------------------------------------------------------------------------------- /examples/frompapers/Brunel_Wang_2001.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Brunel_Wang_2001.py -------------------------------------------------------------------------------- /examples/frompapers/Clopath_et_al_2010_homeostasis.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Clopath_et_al_2010_homeostasis.py -------------------------------------------------------------------------------- /examples/frompapers/Clopath_et_al_2010_no_homeostasis.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Clopath_et_al_2010_no_homeostasis.py -------------------------------------------------------------------------------- /examples/frompapers/Destexhe_et_al_1998.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Destexhe_et_al_1998.py -------------------------------------------------------------------------------- /examples/frompapers/Diehl_Cook_2015.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Diehl_Cook_2015.py -------------------------------------------------------------------------------- /examples/frompapers/Diesmann_et_al_1999.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Diesmann_et_al_1999.py -------------------------------------------------------------------------------- /examples/frompapers/Graupner_Brunel_2012.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Graupner_Brunel_2012.py -------------------------------------------------------------------------------- /examples/frompapers/Hindmarsh_Rose_1984.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Hindmarsh_Rose_1984.py -------------------------------------------------------------------------------- /examples/frompapers/Izhikevich_2003.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Izhikevich_2003.py -------------------------------------------------------------------------------- /examples/frompapers/Izhikevich_2007.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Izhikevich_2007.py -------------------------------------------------------------------------------- /examples/frompapers/Jansen_Rit_1995_single_column.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Jansen_Rit_1995_single_column.py -------------------------------------------------------------------------------- /examples/frompapers/Kremer_et_al_2011_barrel_cortex.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Kremer_et_al_2011_barrel_cortex.py -------------------------------------------------------------------------------- /examples/frompapers/Maass_Natschlaeger_Markram_2002.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Maass_Natschlaeger_Markram_2002.py -------------------------------------------------------------------------------- /examples/frompapers/Morris_Lecar_1981.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Morris_Lecar_1981.py -------------------------------------------------------------------------------- /examples/frompapers/Naud_et_al_2008_adex_firing_patterns.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Naud_et_al_2008_adex_firing_patterns.py -------------------------------------------------------------------------------- /examples/frompapers/Nicola_Clopath_2017.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Nicola_Clopath_2017.py -------------------------------------------------------------------------------- /examples/frompapers/Platkiewicz_Brette_2011.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Platkiewicz_Brette_2011.py -------------------------------------------------------------------------------- /examples/frompapers/Rossant_et_al_2011bis.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Rossant_et_al_2011bis.py -------------------------------------------------------------------------------- /examples/frompapers/Rothman_Manis_2003.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Rothman_Manis_2003.py -------------------------------------------------------------------------------- /examples/frompapers/Spreizer_et_al_2019/Spreizer_et_al_2019.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Spreizer_et_al_2019/Spreizer_et_al_2019.py -------------------------------------------------------------------------------- /examples/frompapers/Spreizer_et_al_2019/perlin1.npy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Spreizer_et_al_2019/perlin1.npy -------------------------------------------------------------------------------- /examples/frompapers/Spreizer_et_al_2019/perlin2.npy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Spreizer_et_al_2019/perlin2.npy -------------------------------------------------------------------------------- /examples/frompapers/Spreizer_et_al_2019/perlin3.npy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Spreizer_et_al_2019/perlin3.npy -------------------------------------------------------------------------------- /examples/frompapers/Spreizer_et_al_2019/perlin4.npy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Spreizer_et_al_2019/perlin4.npy -------------------------------------------------------------------------------- /examples/frompapers/Spreizer_et_al_2019/perlin5.npy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Spreizer_et_al_2019/perlin5.npy -------------------------------------------------------------------------------- /examples/frompapers/Stimberg_et_al_2018/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Stimberg_et_al_2018/README.md -------------------------------------------------------------------------------- /examples/frompapers/Stimberg_et_al_2018/example_1_COBA.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Stimberg_et_al_2018/example_1_COBA.py -------------------------------------------------------------------------------- /examples/frompapers/Stimberg_et_al_2018/example_2_gchi_astrocyte.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Stimberg_et_al_2018/example_2_gchi_astrocyte.py -------------------------------------------------------------------------------- /examples/frompapers/Stimberg_et_al_2018/example_3_io_synapse.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Stimberg_et_al_2018/example_3_io_synapse.py -------------------------------------------------------------------------------- /examples/frompapers/Stimberg_et_al_2018/example_4_rsmean.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Stimberg_et_al_2018/example_4_rsmean.py -------------------------------------------------------------------------------- /examples/frompapers/Stimberg_et_al_2018/example_4_synrel.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Stimberg_et_al_2018/example_4_synrel.py -------------------------------------------------------------------------------- /examples/frompapers/Stimberg_et_al_2018/example_5_astro_ring.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Stimberg_et_al_2018/example_5_astro_ring.py -------------------------------------------------------------------------------- /examples/frompapers/Stimberg_et_al_2018/example_6_COBA_with_astro.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Stimberg_et_al_2018/example_6_COBA_with_astro.py -------------------------------------------------------------------------------- /examples/frompapers/Stimberg_et_al_2018/figures.mplstyle: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Stimberg_et_al_2018/figures.mplstyle -------------------------------------------------------------------------------- /examples/frompapers/Stimberg_et_al_2018/plot_utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Stimberg_et_al_2018/plot_utils.py -------------------------------------------------------------------------------- /examples/frompapers/Stimberg_et_al_2019/example_3_bisection.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Stimberg_et_al_2019/example_3_bisection.py -------------------------------------------------------------------------------- /examples/frompapers/Stimberg_et_al_2019/example_3_bisection_standalone.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Stimberg_et_al_2019/example_3_bisection_standalone.py -------------------------------------------------------------------------------- /examples/frompapers/Sturzl_et_al_2000.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Sturzl_et_al_2000.py -------------------------------------------------------------------------------- /examples/frompapers/Tetzlaff_2015.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Tetzlaff_2015.py -------------------------------------------------------------------------------- /examples/frompapers/Touboul_Brette_2008.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Touboul_Brette_2008.py -------------------------------------------------------------------------------- /examples/frompapers/Tsodyks_Pawelzik_Markram_1998.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Tsodyks_Pawelzik_Markram_1998.py -------------------------------------------------------------------------------- /examples/frompapers/Tsodyks_Uziel_Markram_2000.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Tsodyks_Uziel_Markram_2000.py -------------------------------------------------------------------------------- /examples/frompapers/Vogels_et_al_2011.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Vogels_et_al_2011.py -------------------------------------------------------------------------------- /examples/frompapers/Wang_2002.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Wang_2002.py -------------------------------------------------------------------------------- /examples/frompapers/Wang_Buszaki_1996.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/frompapers/Wang_Buszaki_1996.py -------------------------------------------------------------------------------- /examples/multiprocessing/01_using_cython.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/multiprocessing/01_using_cython.py -------------------------------------------------------------------------------- /examples/multiprocessing/02_using_standalone.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/multiprocessing/02_using_standalone.py -------------------------------------------------------------------------------- /examples/multiprocessing/03_standalone_joblib.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/multiprocessing/03_standalone_joblib.py -------------------------------------------------------------------------------- /examples/network_operation_stop.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/network_operation_stop.py -------------------------------------------------------------------------------- /examples/non_reliability.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/non_reliability.py -------------------------------------------------------------------------------- /examples/phase_locking.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/phase_locking.py -------------------------------------------------------------------------------- /examples/reliability.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/reliability.py -------------------------------------------------------------------------------- /examples/standalone/.gitignore: -------------------------------------------------------------------------------- 1 | /STDP_standalone 2 | /CUBA 3 | -------------------------------------------------------------------------------- /examples/standalone/STDP_standalone.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/standalone/STDP_standalone.py -------------------------------------------------------------------------------- /examples/standalone/cuba_openmp.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/standalone/cuba_openmp.py -------------------------------------------------------------------------------- /examples/standalone/simple_case.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/standalone/simple_case.py -------------------------------------------------------------------------------- /examples/standalone/simple_case_build.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/standalone/simple_case_build.py -------------------------------------------------------------------------------- /examples/standalone/standalone_multiple_processes.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/standalone/standalone_multiple_processes.py -------------------------------------------------------------------------------- /examples/standalone/standalone_multiplerun.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/standalone/standalone_multiplerun.py -------------------------------------------------------------------------------- /examples/synapses/STDP.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/synapses/STDP.py -------------------------------------------------------------------------------- /examples/synapses/continuous_interaction.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/synapses/continuous_interaction.py -------------------------------------------------------------------------------- /examples/synapses/efficient_gaussian_connectivity.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/synapses/efficient_gaussian_connectivity.py -------------------------------------------------------------------------------- /examples/synapses/gapjunctions.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/synapses/gapjunctions.py -------------------------------------------------------------------------------- /examples/synapses/homeostatic_stdp_at_inhibitory_synapes.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/synapses/homeostatic_stdp_at_inhibitory_synapes.py -------------------------------------------------------------------------------- /examples/synapses/jeffress.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/synapses/jeffress.py -------------------------------------------------------------------------------- /examples/synapses/licklider.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/synapses/licklider.py -------------------------------------------------------------------------------- /examples/synapses/nonlinear.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/synapses/nonlinear.py -------------------------------------------------------------------------------- /examples/synapses/spatial_connections.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/synapses/spatial_connections.py -------------------------------------------------------------------------------- /examples/synapses/spike_based_homeostasis.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/synapses/spike_based_homeostasis.py -------------------------------------------------------------------------------- /examples/synapses/state_variables.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/synapses/state_variables.py -------------------------------------------------------------------------------- /examples/synapses/synapses.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/examples/synapses/synapses.py -------------------------------------------------------------------------------- /pyproject.toml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/pyproject.toml -------------------------------------------------------------------------------- /rtd-requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/rtd-requirements.txt -------------------------------------------------------------------------------- /setup.cfg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/setup.cfg -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/setup.py -------------------------------------------------------------------------------- /tutorials/1-intro-to-brian-neurons.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/tutorials/1-intro-to-brian-neurons.ipynb -------------------------------------------------------------------------------- /tutorials/2-intro-to-brian-synapses.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/tutorials/2-intro-to-brian-synapses.ipynb -------------------------------------------------------------------------------- /tutorials/3-intro-to-brian-simulations.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/tutorials/3-intro-to-brian-simulations.ipynb -------------------------------------------------------------------------------- /tutorials/brian.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/tutorials/brian.png -------------------------------------------------------------------------------- /versions.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brian-team/brian2/HEAD/versions.md --------------------------------------------------------------------------------