├── .gitignore ├── LICENSE ├── README.md ├── bin ├── R │ ├── harmony.R │ └── test.R ├── config.py ├── dataset_bonemarrow_ica.py ├── dataset_cordblood_ica.py ├── dataset_cortical.py ├── dataset_hammond_microglia.py ├── dataset_masuda_human_microglia.py ├── dataset_masuda_mouse_microglia.py ├── dataset_mca_adult_brain.py ├── dataset_mca_fetal_brain.py ├── dataset_mca_neonatal_brain.py ├── dataset_mouse_gastr_late_brain.py ├── dataset_pbmc_10x.py ├── dataset_saunders_adult_brain.py ├── dataset_saunders_adult_myeloid.py ├── dataset_zeisel_adolescent_brain.py ├── dataset_zeng_develop_thymus.py ├── draw_graph.py ├── hematopoiesis.py ├── hematopoiesis_cached.py ├── hematopoiesis_dictionary.py ├── microglia.py ├── microglia_cached.py ├── monitor_memory.sh ├── mouse_develop.py ├── mouse_develop_cached.py ├── mouse_develop_dictionary.py ├── overlap_zscore_plot.py ├── process.py ├── subtypes_zeisel_saunders.py └── utils.py ├── conf ├── hematopoiesis.txt └── mouse_develop.txt ├── setup.py └── trajectorama ├── __init__.py ├── _louvain.py ├── pan_dag.py ├── trajectorama.py └── utils.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brianhie/trajectorama/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brianhie/trajectorama/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/brianhie/trajectorama/HEAD/README.md -------------------------------------------------------------------------------- /bin/R/harmony.R: -------------------------------------------------------------------------------- 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