├── .gitignore ├── .travis.yml ├── CONTRIBUTORS.md ├── LICENSE ├── README.md ├── deepometry ├── __init__.py ├── command.py ├── commands │ ├── __init__.py │ ├── command_evaluate.py │ ├── command_extract.py │ ├── command_fit.py │ ├── command_parse.py │ └── command_visualize.py ├── data │ ├── checkpoint.hdf5 │ ├── means.csv │ └── training.csv ├── image │ ├── __init__.py │ ├── generator.py │ └── iterator.py ├── model.py ├── parse.py ├── resources │ └── logback.xml ├── utils.py └── visualize.py ├── docs ├── Makefile ├── make.bat └── source │ ├── api.rst │ ├── conf.py │ ├── examples.rst │ ├── index.rst │ └── intro.rst ├── examples ├── evaluate.ipynb ├── extract.ipynb ├── fit.ipynb ├── parse_CIF.ipynb ├── parse_TIF.ipynb └── visualize.ipynb ├── setup.py └── tests ├── __init__.py ├── commands ├── __init__.py ├── test_command_evaluate.py ├── test_command_fit.py └── test_command_parse.py ├── test_model.py └── test_parse.py /.gitignore: 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