├── .gitignore ├── README.md ├── app-funcs.R ├── app.R ├── cell_types.R ├── cloudbuild.yaml ├── components.R ├── data └── gene_descriptions.txt.gz ├── diffex.R ├── display_labels.R ├── dockerfile ├── dropviz.Rproj ├── dv_label.R ├── exp_sets.txt.template ├── global.R ├── gtag.js ├── html ├── dge-by-class.html ├── dge-by-region.html ├── dge-instructions.html ├── featurette.html ├── landing.html └── team.html ├── image └── shiny-server.sh ├── markers.R ├── metacells-shared.R ├── metacells.R ├── options.R ├── outputOptions.R ├── plot.R ├── prep-all.R ├── prep-components.R ├── prep-expr.R ├── prep-global.R ├── prep-local.sh ├── prep-marker.R ├── prep-metacells.R ├── prep-tSNE.R ├── proxy.R ├── rank-plot.R ├── restart.txt ├── scatter-plot.R ├── shared.R ├── shiny-server ├── dockerfile └── shiny-server.conf ├── staged ├── README.txt ├── globals.Rdata ├── markers │ ├── gene.dict.RDS │ └── top_genes.RDS └── tsne │ ├── global.clusters.bags.Rdata │ ├── global.subclusters.bags.Rdata │ └── local.subclusters.bags.Rdata ├── styles.css ├── tSNE-plot.R ├── tSNE.R ├── team.html ├── user_cluster_selection.R ├── utils └── bag_functions.r └── www ├── HMS.png ├── IMG_20180121_125219868.jpg ├── StanleyCenter-web.png ├── favicon.ico ├── rank-sample.jpg ├── scatter-sample.jpg └── tsne-sample.jpg /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/broadinstitute/dropviz/HEAD/.gitignore -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/broadinstitute/dropviz/HEAD/README.md -------------------------------------------------------------------------------- /app-funcs.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/broadinstitute/dropviz/HEAD/app-funcs.R 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