├── LICENSE.md ├── README.md ├── Test_data.txt ├── bin ├── notice.txt └── zip.exe ├── docs ├── 1_Introduction_into_Protigy.pdf ├── 2_Protigy_data_formats_and_upload.pdf ├── 3_Protigy_local_installation.pdf ├── Volcano.vs.Excel.pdf └── description-column-headers.xlsx ├── global.R ├── ppi ├── BIOGRID-HUMAN-3.4.147.mitab.rds ├── core.psimitab.rds ├── homo_sapiens.mitab.interactions.rds └── ppi.RData ├── protigy.Rproj ├── readme.html ├── rsconnect └── rstudio-connect.broadapps.org │ └── manidr │ └── protigy.dcf ├── server.R ├── src ├── gct-io.R ├── helptext.R ├── linear_model.R ├── manage_sessions.R ├── modT.R ├── my_io.R ├── pheatmap.R └── plots.R ├── ui.R └── www ├── BroadProteomicsLogo.png ├── custom.css ├── help.jpg ├── logo_latest.png ├── logo_legacy.png ├── logo_v4.png ├── piwik_obsolete.js └── style.css /LICENSE.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/broadinstitute/protigy/HEAD/LICENSE.md 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