├── .cloudbuild ├── seqr-docker.cloudbuild.yaml └── seqr-vlm-docker.cloudbuild.yaml ├── .codacy.yaml ├── .dockerignore ├── .gcloudignore ├── .githooks └── pre-push ├── .github ├── ISSUE_TEMPLATE │ ├── bug_report.md │ ├── config.yml │ └── feature_request.md └── workflows │ ├── dev-release.yaml │ ├── dev-vlm-release.yaml │ ├── docker-lint.yaml │ ├── local-install-tests.yml │ ├── prod-release.yaml │ ├── prod-vlm-release.yaml │ ├── trivy.yml │ ├── unit-tests.yml │ └── vlm-unit-tests.yaml ├── .gitignore ├── .hadolint.yaml ├── CHANGELOG.md ├── INCIDENTS.md ├── LICENSE.txt ├── README.md ├── admin ├── __init__.py └── apps.py ├── clickhouse_search ├── __init__.py ├── apps.py ├── backend │ ├── __init__.py │ ├── base.py │ ├── engines.py │ ├── fields.py │ └── functions.py ├── fixtures │ ├── clickhouse_saved_variants.json │ ├── clickhouse_search.json │ ├── clickhouse_transcripts.json │ └── clinvar_all_variants.json ├── management │ ├── __init__.py │ ├── commands │ │ ├── __init__.py │ │ └── set_saved_variant_key.py │ └── tests │ │ ├── __init__.py │ │ └── set_saved_variant_key_tests.py ├── managers.py ├── migrations │ ├── 0015_remove_gnomadgenomessnvindel_key_and_more.py │ ├── 0016_add_affected_status.py │ ├── 0017_fix_affected_status_column_order.py │ ├── 0018_queue_rebuild_gt_stats_jobs.py │ ├── 0019_projectpartitions.py │ ├── 0020_clinvar_new_reference_data.py │ ├── 0021_affected_status_orderby.py │ ├── 0022_db_gene_id.py │ ├── 0023_add_sex_dict.py │ └── __init__.py ├── models.py ├── search.py ├── search_tests.py └── test_utils.py ├── deploy ├── LOCAL_DEVELOPMENT_INSTALL.md ├── LOCAL_INSTALL.md ├── LOCAL_INSTALL_HELM.md ├── MIGRATE.md ├── READVIZ_SETUP.md ├── docker │ └── seqr │ │ ├── Dockerfile │ │ ├── bashrc │ │ ├── bin │ │ ├── restart_server.sh │ │ ├── start_server.sh │ │ └── stop_server.sh │ │ ├── config │ │ └── gunicorn_config.py │ │ ├── entrypoint.sh │ │ ├── readiness_probe │ │ └── wait_for_routes ├── kubectl_helpers │ ├── HELPERS_README.md │ ├── connect_to.sh │ ├── copy_from.sh │ ├── copy_to.sh │ ├── logs.sh │ ├── port_forward.sh │ ├── redeploy_seqr.sh │ ├── restore_local_db.sh │ ├── set_env.sh │ ├── shell.sh │ ├── status.sh │ ├── troubleshoot.sh │ └── utils │ │ ├── check_context.sh │ │ ├── copy.sh │ │ ├── get_pod_info.sh │ │ └── get_pod_name.sh └── postgres │ └── initdb.sql ├── docker-compose.yml ├── manage.py ├── matchmaker ├── __init__.py ├── apps.py ├── management │ ├── __init__.py │ └── commands │ │ └── __init__.py ├── matchmaker_utils.py ├── migrations │ ├── 0001_initial.py │ ├── 0002_matchmakerresult_originating_submission.py │ ├── 0003_auto_20201123_2111.py │ ├── 0004_alter_matchmakersubmission_individual.py │ ├── 0005_auto_20220921_1913.py │ └── __init__.py ├── models.py └── views │ ├── __init__.py │ ├── external_api.py │ ├── external_api_tests.py │ ├── matchmaker_api.py │ └── matchmaker_api_tests.py ├── panelapp ├── __init__.py ├── apps.py ├── fixtures │ └── panelapp.json ├── management │ ├── __init__.py │ ├── commands │ │ ├── __init__.py │ │ └── import_all_panels.py │ └── tests │ │ └── __init__.py ├── migrations │ ├── 0001_initial.py │ ├── 0002_auto_20210915_1049.py │ ├── 0003_panelapp_aus_domain_migration.py │ └── __init__.py ├── models.py ├── pa_locus_list_api_tests.py ├── panelapp_utils.py └── test_resources │ ├── au_panelapp_genes.json │ ├── au_panelapp_panels_p1.json │ ├── au_panelapp_panels_p2.json │ ├── uk_panelapp_genes.json │ └── uk_panelapp_panels_p1.json ├── reference_data ├── __init__.py ├── admin.py ├── apps.py ├── management │ ├── __init__.py │ ├── commands │ │ ├── __init__.py │ │ └── update_all_reference_data.py │ └── tests │ │ ├── __init__.py │ │ ├── test_utils.py │ │ ├── update_all_reference_data_tests.py │ │ ├── update_clingen_tests.py │ │ ├── update_dbnsfp_gene_tests.py │ │ ├── update_gencc_tests.py │ │ ├── update_gencode_tests.py │ │ ├── update_gene_cn_sensitivity_tests.py │ │ ├── update_gene_constraint_tests.py │ │ ├── update_gene_shet_tests.py │ │ ├── update_hpo_tests.py │ │ ├── update_mgi_tests.py │ │ ├── update_omim_tests.py │ │ └── update_primate_ai_tests.py ├── migrations │ ├── 0001_initial.py │ ├── 0002_auto_20170319_0332.py │ ├── 0003_clinvar.py │ ├── 0004_auto_20170626_1401.py │ ├── 0005_auto_20170627_0318.py │ ├── 0006_auto_20170630_1754.py │ ├── 0007_auto_20180809_2053.py │ ├── 0008_geneexpression.py │ ├── 0009_auto_20180917_2015.py │ ├── 0010_auto_20190319_1518.py │ ├── 0011_primateai.py │ ├── 0012_auto_20190321_1656.py │ ├── 0013_auto_20190404_1953.py │ ├── 0014_auto_20190510_2150.py │ ├── 0015_auto_20190625_1813.py │ ├── 0016_dbnsfpgene_gene_names.py │ ├── 0017_auto_20190909_2102.py │ ├── 0018_genecopynumbersensitivity.py │ ├── 0019_gencc.py │ ├── 0020_clingen.py │ ├── 0021_auto_20221031_2049.py │ ├── 0022_geneshet.py │ ├── 0023_remove_omim_phenotypic_series_number.py │ ├── 0024_auto_20231218_1656.py │ ├── 0025_dataversions.py │ └── __init__.py ├── models.py └── utils │ ├── __init__.py │ ├── dbnsfp_utils.py │ ├── download_utils.py │ ├── download_utils_tests.py │ ├── gencode_utils.py │ └── gene_utils.py ├── requirements-dev.in ├── requirements-dev.txt ├── requirements.in ├── requirements.txt ├── seqr ├── __init__.py ├── admin.py ├── apps.py ├── fixtures │ ├── 1kg_project.json │ ├── README.txt │ ├── new_variant_tag_types.json │ ├── reference_data.json │ ├── report_variants.json │ ├── social_auth.json │ ├── users.json │ ├── variant_searches.json │ └── variant_tag_types.json ├── management │ ├── __init__.py │ ├── commands │ │ ├── __init__.py │ │ ├── add_project_tag.py │ │ ├── check_bam_cram_paths.py │ │ ├── check_for_new_samples_from_pipeline.py │ │ ├── clear_project_tags.py │ │ ├── copy_project_tags.py │ │ ├── deactivate_project_search.py │ │ ├── detect_inactive_privileged_users.py │ │ ├── reload_clinvar_all_variants.py │ │ ├── reload_saved_variant_json.py │ │ ├── resend_welcome_email.py │ │ ├── reset_cached_search_results.py │ │ ├── tag_seqr_prioritized_variants.py │ │ ├── transfer_families_to_different_project.py │ │ ├── update_igv_location.py │ │ ├── update_individuals_sample_qc.py │ │ └── update_mme_contact.py │ └── tests │ │ ├── __init__.py │ │ ├── add_project_tag_tests.py │ │ ├── check_bam_cram_paths_tests.py │ │ ├── check_for_new_samples_from_pipeline_tests.py │ │ ├── clear_project_tags_tests.py │ │ ├── copy_project_tags_tests.py │ │ ├── deactivate_project_search_tests.py │ │ ├── detect_inactive_priveleged_users_tests.py │ │ ├── reload_clinvar_all_variants_tests.py │ │ ├── reload_saved_variant_json_tests.py │ │ ├── resend_welcome_email_tests.py │ │ ├── reset_cached_search_results_tests.py │ │ ├── tag_seqr_prioritized_variants_tests.py │ │ ├── transfer_families_to_different_project_tests.py │ │ ├── update_igv_location_tests.py │ │ ├── update_individuals_sample_qc_tests.py │ │ └── update_mme_contact_tests.py ├── migrations │ ├── 0001_squashed_0067_remove_project_custom_reference_populations.py │ ├── 0002_auto_20191203_1913.py │ ├── 0003_auto_20191203_1130.py │ ├── 0004_auto_20200124_1912.py │ ├── 0005_locuslist_projects.py │ ├── 0006_family_mme_notes.py │ ├── 0007_auto_20200303_1842.py │ ├── 0008_auto_20200317_1716.py │ ├── 0009_auto_20200402_2219.py │ ├── 0010_auto_20200413_2159.py │ ├── 0011_individual_proband_relationship.py │ ├── 0012_auto_20200603_1924.py │ ├── 0013_individual_sv_flags.py │ ├── 0014_userpolicy.py │ ├── 0015_auto_20201112_1617.py │ ├── 0016_auto_20201120_1636.py │ ├── 0017_auto_20201124_1446.py │ ├── 0018_auto_20201202_1553.py │ ├── 0019_auto_20201221_1718.py │ ├── 0020_remove_project_disable_staff_access.py │ ├── 0021_auto_20210125_2221.py │ ├── 0022_auto_20210201_2151.py │ ├── 0023_auto_20210304_2315.py │ ├── 0024_varianttag_metadata.py │ ├── 0025_auto_20210428_1619.py │ ├── 0026_auto_20210521_1836.py │ ├── 0027_family_pedigree_dataset.py │ ├── 0028_auto_20210826_1528.py │ ├── 0029_auto_20210826_1748.py │ ├── 0030_project_enable_hgmd.py │ ├── 0031_project_all_user_demo.py │ ├── 0032_warningmessage.py │ ├── 0033_savedvariant_acmg_classification.py │ ├── 0034_auto_20211208_1645.py │ ├── 0035_variantsearch_order.py │ ├── 0036_auto_20220201_2131.py │ ├── 0037_alter_familyanalysedby_family.py │ ├── 0038_alter_family_analysis_status.py │ ├── 0039_project_is_demo.py │ ├── 0040_familyanalysedby_data_type.py │ ├── 0041_auto_20220502_1614.py │ ├── 0042_alter_sample_dataset_type.py │ ├── 0042_auto_20220621_1852.py │ ├── 0043_merge_20220629_1941.py │ ├── 0044_alter_variantfunctionaldata_functional_data_tag.py │ ├── 0045_project_consent_code.py │ ├── 0046_auto_20220831_2129.py │ ├── 0047_auto_20220908_1851.py │ ├── 0048_phenotypeprioritization.py │ ├── 0049_family_mondo_id.py │ ├── 0050_rnaseqspliceoutlier.py │ ├── 0051_auto_20230426_1615.py │ ├── 0052_rnaseqspliceoutlier_rank.py │ ├── 0053_auto_20230810_1403.py │ ├── 0054_alter_sample_dataset_type.py │ ├── 0055_alter_sample_tissue_type.py │ ├── 0056_alter_family_post_discovery_omim_number.py │ ├── 0057_alter_family_analysis_status.py │ ├── 0058_alter_sample_dataset_type.py │ ├── 0059_project_subscribers.py │ ├── 0060_alter_family_analysis_status.py │ ├── 0061_auto_20240313_1939.py │ ├── 0062_individual_solve_status.py │ ├── 0063_dynamicanalysisgroup.py │ ├── 0064_alter_phenotypeprioritization.py │ ├── 0065_family_external_data.py │ ├── 0066_family_post_discovery_mondo_id.py │ ├── 0067_alter_variantfunctionaldata_functional_data_tag.py │ ├── 0068_project_vlm_contact_email.py │ ├── 0069_remove_sample_dataset_type_and_more.py │ ├── 0070_remove_rnasample_dataset_type_and_more.py │ ├── 0071_igvsample_index_file_path.py │ ├── 0072_alter_sample_dataset_type.py │ ├── 0073_alter_variantfunctionaldata_functional_data_tag.py │ ├── 0074_alter_individual_add_primary_biosample_types.py │ ├── 0075_alter_individual_primary_biosample.py │ ├── 0076_alter_individual_sex.py │ ├── 0077_alter_rnasample_tissue_type.py │ ├── 0078_rename_submit_to_clinvar_variantnote_report.py │ ├── 0079_alter_family_analysis_status.py │ ├── 0080_savedvariant_dataset_type_savedvariant_genotypes_and_more.py │ ├── 0081_savedvariant_gene_ids.py │ └── __init__.py ├── models.py ├── static │ ├── fonts │ │ ├── icon-overrides.eot │ │ ├── icon-overrides.svg │ │ ├── icon-overrides.ttf │ │ └── icon-overrides.woff │ └── images │ │ ├── landing_page_icon1.png │ │ ├── landing_page_icon2.png │ │ ├── landing_page_icon3.png │ │ ├── table_excel.png │ │ └── table_tsv.png ├── testrunner.py ├── urls.py ├── utils │ ├── __init__.py │ ├── communication_utils.py │ ├── file_utils.py │ ├── file_utils_tests.py │ ├── gene_utils.py │ ├── logging_utils.py │ ├── middleware.py │ ├── redis_utils.py │ ├── redis_utils_tests.py │ ├── search │ │ ├── __init__.py │ │ ├── add_data_utils.py │ │ ├── constants.py │ │ ├── elasticsearch │ │ │ ├── __init__.py │ │ │ ├── constants.py │ │ │ ├── es_gene_agg_search.py │ │ │ ├── es_search.py │ │ │ ├── es_utils.py │ │ │ └── es_utils_tests.py │ │ ├── search_utils_tests.py │ │ └── utils.py │ ├── social_auth_pipeline.py │ ├── social_auth_pipeline_tests.py │ ├── vcf_utils.py │ ├── xpos_utils.py │ └── xpos_utils_tests.py └── views │ ├── __init__.py │ ├── apis │ ├── __init__.py │ ├── analysis_group_api.py │ ├── analysis_group_api_tests.py │ ├── anvil_workspace_api.py │ ├── anvil_workspace_api_tests.py │ ├── auth_api.py │ ├── auth_api_tests.py │ ├── awesomebar_api.py │ ├── awesomebar_api_tests.py │ ├── case_review_api.py │ ├── case_review_api_tests.py │ ├── dashboard_api.py │ ├── dashboard_api_tests.py │ ├── data_manager_api.py │ ├── data_manager_api_tests.py │ ├── dataset_api.py │ ├── dataset_api_tests.py │ ├── family_api.py │ ├── family_api_tests.py │ ├── feature_updates_api.py │ ├── feature_updates_api_tests.py │ ├── gene_api.py │ ├── gene_api_tests.py │ ├── igv_api.py │ ├── igv_api_tests.py │ ├── individual_api.py │ ├── individual_api_tests.py │ ├── locus_list_api.py │ ├── locus_list_api_tests.py │ ├── project_api.py │ ├── project_api_tests.py │ ├── project_categories_api.py │ ├── project_categories_api_tests.py │ ├── report_api.py │ ├── report_api_tests.py │ ├── saved_variant_api.py │ ├── saved_variant_api_tests.py │ ├── summary_data_api.py │ ├── summary_data_api_tests.py │ ├── superuser_api.py │ ├── superuser_api_tests.py │ ├── users_api.py │ ├── users_api_tests.py │ ├── variant_search_api.py │ └── variant_search_api_tests.py │ ├── react_app.py │ ├── react_app_tests.py │ ├── status.py │ ├── status_tests.py │ └── utils │ ├── __init__.py │ ├── airtable_utils.py │ ├── anvil_metadata_utils.py │ ├── dataset_utils.py │ ├── export_utils.py │ ├── export_utils_tests.py │ ├── file_utils.py │ ├── file_utils_tests.py │ ├── individual_utils.py │ ├── json_to_orm_utils.py │ ├── json_utils.py │ ├── note_utils.py │ ├── orm_to_json_utils.py │ ├── orm_to_json_utils_tests.py │ ├── pedigree_info_utils.py │ ├── permissions_utils.py │ ├── project_context_utils.py │ ├── terra_api_utils.py │ ├── terra_api_utils_tests.py │ ├── test_utils.py │ ├── variant_utils.py │ └── vlm_utils.py ├── settings ├── settings.py ├── test_local_deployment.sh ├── ui ├── .env ├── .eslintignore ├── .eslintrc ├── .project ├── .settings │ ├── .jsdtscope │ ├── org.eclipse.wst.jsdt.ui.superType.container │ └── org.eclipse.wst.jsdt.ui.superType.name ├── .stylelintrc ├── @types │ ├── remove-markdown.d.ts │ └── timeout-as-promise.d.ts ├── Makefile ├── app.html ├── app.jsx ├── config │ ├── README.md │ ├── d3-bundle.js │ ├── env.js │ ├── jest │ │ ├── cssTransform.js │ │ └── fileTransform.js │ ├── paths.js │ ├── polyfills.js │ ├── webpack.config.dev.js │ ├── webpack.config.dev.js~ │ ├── webpack.config.prod.js │ └── webpackDevServer.config.js ├── create_jsx_test.py ├── package-lock.json ├── package.json ├── pages │ ├── AnvilWorkspace │ │ └── LoadWorkspaceData.jsx │ ├── Dashboard │ │ ├── Dashboard.jsx │ │ ├── Dashboard.test.js │ │ ├── components │ │ │ ├── CategoryIndicator.jsx │ │ │ ├── CategoryIndicator.test.js │ │ │ ├── ComputedColoredIcon.jsx │ │ │ ├── CreateProjectButton.jsx │ │ │ ├── EditProjectCategoriesModal.jsx │ │ │ ├── EditProjectCategoriesModal.test.js │ │ │ ├── FilterSelector.jsx │ │ │ ├── FilterSelector.test.js │ │ │ ├── ProjectEllipsisMenu.jsx │ │ │ └── ProjectEllipsisMenu.test.js │ │ ├── constants.js │ │ ├── fixtures.js │ │ ├── reducers.js │ │ ├── selectors.js │ │ └── selectors.test.js │ ├── DataManagement │ │ ├── DataManagement.jsx │ │ ├── components │ │ │ ├── AddIGV.jsx │ │ │ ├── ElasticsearchStatus.jsx │ │ │ ├── LoadData.jsx │ │ │ ├── PhenotypePrioritization.jsx │ │ │ ├── RnaSeq.jsx │ │ │ ├── TriggerSearchDataUpdatePages.jsx │ │ │ └── Users.jsx │ │ ├── reducers.js │ │ └── selectors.js │ ├── Login │ │ ├── Login.jsx │ │ ├── components │ │ │ ├── AcceptPolicies.jsx │ │ │ ├── AcceptPolicies.test.js │ │ │ ├── ForgotPassword.jsx │ │ │ ├── ForgotPassword.test.js │ │ │ ├── Login.jsx │ │ │ ├── Login.test.js │ │ │ ├── LoginError.jsx │ │ │ ├── SetPassword.jsx │ │ │ ├── SetPassword.test.js │ │ │ └── UserFormLayout.jsx │ │ ├── reducers.js │ │ └── selectors.js │ ├── Project │ │ ├── Project.jsx │ │ ├── components │ │ │ ├── AnalysisGroupButtons.jsx │ │ │ ├── AnalysisGroupButtons.test.js │ │ │ ├── AnalysisGroups.jsx │ │ │ ├── CaseReview.jsx │ │ │ ├── CaseReview.test.js │ │ │ ├── CreateVariantButton.jsx │ │ │ ├── CreateVariantsButton.test.js │ │ │ ├── EditDatasetButton.test.js │ │ │ ├── EditDatasetsButton.jsx │ │ │ ├── FamilyPage.jsx │ │ │ ├── FamilyPage.test.js │ │ │ ├── FamilyTable │ │ │ │ ├── CaseReviewStatusDropdown.jsx │ │ │ │ ├── CaseReviewStatusDropdown.test.js │ │ │ │ ├── CollapsableLayout.jsx │ │ │ │ ├── FamilyTable.jsx │ │ │ │ ├── FamilyTable.test.js │ │ │ │ ├── IndividualRow.jsx │ │ │ │ ├── IndividualRow.test.js │ │ │ │ └── header │ │ │ │ │ ├── SortDirectionToggle.jsx │ │ │ │ │ ├── SortDirectionToggle.test.js │ │ │ │ │ ├── TableHeaderRow.jsx │ │ │ │ │ └── TableHeaderRow.test.js │ │ │ ├── GeneLists.jsx │ │ │ ├── HpoTerms.jsx │ │ │ ├── Matchmaker.jsx │ │ │ ├── Matchmaker.test.js │ │ │ ├── PageHeader.jsx │ │ │ ├── PageHeader.test.js │ │ │ ├── PhenotypePrioritizedGenes.jsx │ │ │ ├── ProjectCollaborators.jsx │ │ │ ├── ProjectCollaborators.test.js │ │ │ ├── ProjectNotifications.jsx │ │ │ ├── ProjectOverview.jsx │ │ │ ├── ProjectPageUI.jsx │ │ │ ├── ProjectPageUI.test.js │ │ │ ├── RnaSeqOutliers.jsx │ │ │ ├── RnaSeqResultPage.jsx │ │ │ ├── SavedVariants.jsx │ │ │ ├── SelectSavedVariantsTable.jsx │ │ │ ├── VariantTagTypeBar.jsx │ │ │ ├── VariantTags.jsx │ │ │ └── edit-families-and-individuals │ │ │ │ ├── BulkEditForm.jsx │ │ │ │ ├── EditFamiliesAndIndividualsButton.jsx │ │ │ │ ├── EditFamiliesForm.jsx │ │ │ │ ├── EditIndividualMetadataButton.jsx │ │ │ │ ├── EditIndividualsForm.jsx │ │ │ │ └── ImportGregorMetadata.jsx │ │ ├── constants.js │ │ ├── fixtures.js │ │ ├── reducers.js │ │ ├── selectors.js │ │ └── selectors.test.js │ ├── Public │ │ ├── PublicRoutes.jsx │ │ └── components │ │ │ ├── Faq.jsx │ │ │ ├── FeatureUpdates.jsx │ │ │ ├── LandingPage.jsx │ │ │ ├── MatchmakerDisclaimer.jsx │ │ │ ├── MatchmakerInfo.jsx │ │ │ ├── PrivacyPolicy.jsx │ │ │ └── TermsOfService.jsx │ ├── Report │ │ ├── Report.jsx │ │ ├── components │ │ │ ├── Anvil.jsx │ │ │ ├── FamilyMetadata.jsx │ │ │ ├── Gregor.jsx │ │ │ ├── SeqrStats.jsx │ │ │ └── VariantMetadata.jsx │ │ ├── reducers.js │ │ └── selectors.js │ ├── Search │ │ ├── VariantSearch.jsx │ │ ├── components │ │ │ ├── GeneBreakdown.jsx │ │ │ ├── GeneBreakdown.test.js │ │ │ ├── PageHeader.jsx │ │ │ ├── PageHeader.test.js │ │ │ ├── SavedSearch.jsx │ │ │ ├── SavedSearch.test.js │ │ │ ├── SearchDisplayForm.jsx │ │ │ ├── VariantSearchForm.jsx │ │ │ ├── VariantSearchForm.test.js │ │ │ ├── VariantSearchFormContent.jsx │ │ │ ├── VariantSearchFormContent.test.js │ │ │ ├── VariantSearchFormPanelConfigs.jsx │ │ │ ├── VariantSearchFormPanels.jsx │ │ │ ├── VariantSearchResults.jsx │ │ │ ├── VariantSearchResults.test.js │ │ │ └── filters │ │ │ │ ├── CustomInheritanceFilter.jsx │ │ │ │ ├── CustomInheritanceFilter.test.js │ │ │ │ ├── FrequencyFilter.jsx │ │ │ │ ├── FrequencyFilter.test.js │ │ │ │ ├── LabeledSlider.jsx │ │ │ │ ├── LocusListItemsFilter.jsx │ │ │ │ ├── LocusListSelector.jsx │ │ │ │ ├── LocusListSelector.test.js │ │ │ │ ├── PaLocusListSelector.jsx │ │ │ │ ├── PaMoiSelector.jsx │ │ │ │ ├── ProjectFamiliesField.jsx │ │ │ │ ├── ProjectFamiliesField.test.js │ │ │ │ ├── ProjectFamiliesFilter.jsx │ │ │ │ └── ProjectsField.jsx │ │ ├── constants.js │ │ ├── fixtures.js │ │ ├── reducers.js │ │ ├── selectors.js │ │ └── selectors.test.js │ └── SummaryData │ │ ├── SummaryData.jsx │ │ ├── components │ │ ├── ExternalAnalysis.jsx │ │ ├── GeneInfoSearch.jsx │ │ ├── GeneVariantLookup.jsx │ │ ├── Hpo.jsx │ │ ├── IndividualMetadata.jsx │ │ ├── IndividualMetadata.test.js │ │ ├── LocusLists.jsx │ │ ├── Matchmaker.jsx │ │ ├── SavedVariants.jsx │ │ ├── SuccessStory.jsx │ │ └── VariantLookup.jsx │ │ ├── constants.js │ │ ├── reducers.js │ │ └── selectors.js ├── patches │ └── pedigreejs+2.0.0-rc2.patch ├── redux │ ├── rootReducer.js │ ├── selectors.js │ ├── selectors.test.js │ └── utils │ │ ├── configureStore.js │ │ ├── modalReducer.js │ │ ├── reducerFactories.js │ │ ├── reducerFactories.test.js │ │ └── reducerUtils.js ├── scripts │ ├── README.md │ ├── build.js │ ├── start.js │ └── test.js ├── shared │ ├── components │ │ ├── DataLoader.jsx │ │ ├── LocusListLoader.jsx │ │ ├── PopupWithModal.jsx │ │ ├── QueryParamEditor.jsx │ │ ├── QueryParamEditor.test.js │ │ ├── Spacers.jsx │ │ ├── Spacers.test.js │ │ ├── StateDataLoader.jsx │ │ ├── StyledComponents.jsx │ │ ├── buttons │ │ │ ├── CopyToClipboardButton.jsx │ │ │ ├── DeleteButton.jsx │ │ │ ├── DeleteButton.test.js │ │ │ ├── DispatchRequestButton.jsx │ │ │ ├── DispatchRequestButton.test.js │ │ │ ├── EditProjectButton.jsx │ │ │ ├── ExportTableButton.jsx │ │ │ ├── ExportTableButton.test.js │ │ │ ├── FamilyLink.jsx │ │ │ ├── LocusListButtons.jsx │ │ │ ├── LocusListButtons.test.js │ │ │ ├── SearchResultsLink.jsx │ │ │ ├── SendEmailButton.jsx │ │ │ ├── ShowGeneModal.jsx │ │ │ ├── ShowGeneModal.test.js │ │ │ ├── UpdateButton.jsx │ │ │ └── UpdateButton.test.js │ │ ├── form │ │ │ ├── AnvilFileSelector.jsx │ │ │ ├── BulkUploadForm.jsx │ │ │ ├── ButtonPanel.jsx │ │ │ ├── EditRecordsForm.jsx │ │ │ ├── FormHelpers.jsx │ │ │ ├── FormWizard.jsx │ │ │ ├── FormWrapper.jsx │ │ │ ├── IGVUploadField.jsx │ │ │ ├── Inputs.jsx │ │ │ ├── Inputs.test.js │ │ │ ├── LoadOptionsSelect.jsx │ │ │ ├── PhiWarningUploadField.jsx │ │ │ ├── README │ │ │ ├── RichTextEditor.jsx │ │ │ ├── StateChangeForm.jsx │ │ │ ├── XHRUploaderField.jsx │ │ │ └── XHRUploaderWithEvents.jsx │ │ ├── graph │ │ │ ├── Gtex.jsx │ │ │ ├── GtexLauncher.jsx │ │ │ ├── HorizontalStackedBar.jsx │ │ │ ├── HorizontalStackedBar.test.js │ │ │ ├── IGV.jsx │ │ │ ├── README │ │ │ └── d3Utils.jsx │ │ ├── icons │ │ │ ├── PedigreeIcon.jsx │ │ │ └── PedigreeIcon.test.js │ │ ├── modal │ │ │ ├── Modal.jsx │ │ │ ├── Modal.test.js │ │ │ └── README │ │ ├── page │ │ │ ├── AcceptCookies.jsx │ │ │ ├── AwesomeBar.jsx │ │ │ ├── AwesomeBar.test.js │ │ │ ├── BaseLayout.jsx │ │ │ ├── BaseLayout.test.js │ │ │ ├── Errors.jsx │ │ │ ├── Footer.jsx │ │ │ ├── Footer.test.js │ │ │ ├── Header.jsx │ │ │ ├── Header.test.js │ │ │ ├── PageHeader.jsx │ │ │ ├── PageHeaderLayout.jsx │ │ │ ├── ProjectSelector.jsx │ │ │ ├── README │ │ │ ├── SubmitFormPage.jsx │ │ │ ├── UploadFormPage.jsx │ │ │ ├── WarningMessages.jsx │ │ │ └── __snapshots__ │ │ │ │ └── AwesomeBar.test.js.snap │ │ ├── panel │ │ │ ├── HpoPanel.jsx │ │ │ ├── HpoPanel.test.js │ │ │ ├── LoadWorkspaceDataForm.jsx │ │ │ ├── LoadWorkspaceDataForm.test.js │ │ │ ├── MatchmakerPanel.jsx │ │ │ ├── MatchmakerPanel.test.js │ │ │ ├── README │ │ │ ├── RequestStatus.jsx │ │ │ ├── RequestStatus.test.js │ │ │ ├── acmg │ │ │ │ ├── AcmgCategoryCriteriaScore.jsx │ │ │ │ ├── AcmgCriteria.jsx │ │ │ │ ├── AcmgCriteriaDropDownOptions.jsx │ │ │ │ ├── AcmgModal.jsx │ │ │ │ └── AcmgRuleSpecification.jsx │ │ │ ├── family │ │ │ │ ├── Family.jsx │ │ │ │ ├── Family.test.js │ │ │ │ ├── FamilyFields.jsx │ │ │ │ ├── FamilyLayout.jsx │ │ │ │ ├── FamilyReads.jsx │ │ │ │ ├── FamilyReads.test.js │ │ │ │ └── constants.js │ │ │ ├── fixtures.js │ │ │ ├── genes │ │ │ │ ├── GeneDetail.jsx │ │ │ │ ├── GeneDetail.test.js │ │ │ │ ├── LocusListDetail.jsx │ │ │ │ └── LocusListDetail.test.js │ │ │ ├── sample.jsx │ │ │ ├── variants │ │ │ │ ├── Annotations.jsx │ │ │ │ ├── Annotations.test.js │ │ │ │ ├── ClinGenVciLink.jsx │ │ │ │ ├── FamilyVariantTags.jsx │ │ │ │ ├── FamilyVariantTags.test.js │ │ │ │ ├── Frequencies.jsx │ │ │ │ ├── Frequencies.test.js │ │ │ │ ├── Pathogenicity.jsx │ │ │ │ ├── Pathogenicity.test.js │ │ │ │ ├── Predictions.jsx │ │ │ │ ├── Predictions.test.js │ │ │ │ ├── RnaSeqTpm.jsx │ │ │ │ ├── RnaSeqTpm.test.js │ │ │ │ ├── SavedVariants.jsx │ │ │ │ ├── SavedVariants.test.js │ │ │ │ ├── Transcripts.jsx │ │ │ │ ├── Transcripts.test.js │ │ │ │ ├── VariantClassify.jsx │ │ │ │ ├── VariantGene.jsx │ │ │ │ ├── VariantGene.test.js │ │ │ │ ├── VariantIndividuals.jsx │ │ │ │ ├── VariantIndividuals.test.js │ │ │ │ ├── VariantUtils.jsx │ │ │ │ ├── Variants.jsx │ │ │ │ ├── Variants.test.js │ │ │ │ ├── selectors.js │ │ │ │ └── selectors.test.js │ │ │ ├── view-fields │ │ │ │ ├── BaseFieldView.jsx │ │ │ │ ├── ListFieldView.jsx │ │ │ │ ├── ListFieldView.test.js │ │ │ │ ├── NoteListFieldView.jsx │ │ │ │ ├── NullableBoolFieldView.jsx │ │ │ │ ├── NullableBoolFieldView.test.js │ │ │ │ ├── OptionFieldView.jsx │ │ │ │ ├── OptionFieldView.test.js │ │ │ │ ├── README │ │ │ │ ├── SingleFieldView.jsx │ │ │ │ ├── TagFieldView.jsx │ │ │ │ ├── TagFieldView.test.js │ │ │ │ ├── TextFieldView.jsx │ │ │ │ └── TextFieldView.test.js │ │ │ └── view-pedigree-image │ │ │ │ ├── LazyPedigreeImagePanel.jsx │ │ │ │ ├── PedigreeImageButtons.jsx │ │ │ │ ├── PedigreeImagePanel.jsx │ │ │ │ └── PedigreeImagePanel.test.js │ │ └── table │ │ │ ├── DataTable.jsx │ │ │ ├── DataTable.test.js │ │ │ ├── LoadReportTable.jsx │ │ │ ├── LocusListTabels.test.js │ │ │ ├── LocusListTables.jsx │ │ │ ├── RnaSeqJunctionOutliersTable.jsx │ │ │ └── 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