├── .Rbuildignore ├── .gitignore ├── DESCRIPTION ├── NAMESPACE ├── NEWS ├── NEWS.md ├── R ├── Arroyo.R ├── HEC.R ├── HidingAnAxis.R ├── HivePlotData.R ├── HiveR-package.R ├── adj2HPD.R ├── animateHive.R ├── chkHPD.R ├── dot2HPD.R ├── drawHiveSpline.R ├── edge2HPD.R ├── manipAxis.R ├── mineHPD.R ├── plot3dHive.R ├── plotHive.R ├── ranHiveData.R ├── rcsr.R ├── sph2cart.R └── sumHPD.R ├── README.md ├── data ├── Arroyo.RData ├── HEC.RData └── Safari.RData ├── inst └── extdata │ ├── E_coli │ ├── E_coli_P.dot │ ├── E_coli_TF.dot │ ├── EdgeInst_P.csv │ ├── EdgeInst_TF.csv │ ├── NodeInst_P.csv │ ├── NodeLabels_P.csv │ └── README │ └── Misc │ ├── BlueEye.jpg │ ├── BrownEye.jpg │ ├── GreenEye.jpg │ ├── HECgraphics.txt │ ├── HECnodes.txt │ ├── HECticks.txt │ ├── HazelEye.jpg │ └── README └── man ├── Arroyo.Rd ├── HEC.Rd ├── HidingAnAxis.Rd ├── HivePlotData.Rd ├── HiveR-package.Rd ├── adj2HPD.Rd ├── animateHive.Rd ├── chkHPD.Rd ├── dot2HPD.Rd ├── drawHiveSpline.Rd ├── edge2HPD.Rd ├── manipAxis.Rd 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