├── .gitignore ├── .pylintrc ├── README.md ├── bin ├── cluster.py ├── create_tifs.sh ├── cross_validate.py ├── fig_intro.py ├── fig_pipeline.py ├── generate_figs.py ├── nuclei.py ├── plot_model.py ├── variance_bootstrap.py └── visualize.py ├── example.cfg ├── setup.cfg ├── setup.py ├── stnet ├── __init__.py ├── __main__.py ├── __version__.py ├── cmd │ ├── __init__.py │ ├── prepare │ │ ├── __init__.py │ │ └── spatial.py │ ├── print_spatial.py │ └── run_spatial.py ├── config.py ├── datasets │ ├── __init__.py │ └── spatial.py ├── main.py ├── parser.py ├── transforms │ ├── __init__.py │ ├── eight_symmetry.py │ └── unnormalize.py └── utils │ ├── __init__.py │ ├── ensembl.py │ ├── histology.py │ ├── logging.py │ ├── nn.py │ ├── openslide.py │ └── util.py └── tox.ini /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bryanhe/ST-Net/HEAD/.gitignore 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