├── Atherosclerosis_Multi_Trait_GWAS ├── GTEx_Tissue_Summary_with_filenames.csv ├── README.md ├── dbsnp_hash_table_maker.py ├── eQTL_config_template.R └── eqtl_colocalizer.R ├── GTEx_v8_Tissue_Summary_with_filenames.csv ├── GTEx_v8_sQTL_Tissue_Summary_with_filenames.csv ├── LICENSE ├── QTL_config_template.R ├── README.md ├── colocquial.R ├── colocquial_in_series ├── QTL_config_template.R ├── colocquial.R ├── colocquial_wrapper_in_series.sh ├── qtl_config.sh ├── summarize_qtl_coloc_PP3_PP4_results.R └── summarize_qtl_results.sh ├── colocquial_wrapper.sh ├── create_tabix_eqtl_catalogue.sh ├── create_tabix_gtex_eqtl_allpairs.sh ├── create_tabix_gtex_eqtl_sigpairs.sh ├── create_tabix_gtex_sqtl_allpairs.sh ├── create_tabix_gtex_sqtl_sigpairs.sh ├── dbsnp_hash_table_maker.py ├── make_significant_pairs_files.R ├── qtl_coloc_template.bsub ├── qtl_config.sh ├── setup_config.R ├── setup_config.sh ├── summarize_qtl_coloc_PP3_PP4_results.R ├── summarize_qtl_results.sh ├── summarize_results.bsub └── test_data ├── BMI_Pulit_README.Rmd ├── BMI_example_lead_SNP_file.txt ├── BMI_example_lead_SNP_file_all.txt └── qtl_config.sh /Atherosclerosis_Multi_Trait_GWAS/GTEx_Tissue_Summary_with_filenames.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bvoightlab/ColocQuiaL/HEAD/Atherosclerosis_Multi_Trait_GWAS/GTEx_Tissue_Summary_with_filenames.csv -------------------------------------------------------------------------------- /Atherosclerosis_Multi_Trait_GWAS/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bvoightlab/ColocQuiaL/HEAD/Atherosclerosis_Multi_Trait_GWAS/README.md -------------------------------------------------------------------------------- /Atherosclerosis_Multi_Trait_GWAS/dbsnp_hash_table_maker.py: -------------------------------------------------------------------------------- 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