├── .gitignore ├── Homework _Aug_25.ipynb ├── README.md ├── figs └── poster.jpg ├── network_models ├── CANN.py ├── EI_balance_network.py ├── EI_balance_network_Ecurrent.py ├── ESN.py ├── __init__.py ├── decision_making_rate_model.py └── decision_making_spiking_model.py ├── neuron_models ├── AdEx_model.py ├── ExpIF_QIF_dudt_compare.py ├── ExpIF_model.py ├── FRNeuron.py ├── GIF_model.py ├── HH_generate_data.py ├── HH_mhn_V_curve.py ├── HH_model.py ├── HindmarshRose_model.py ├── Izhikevich_model.py ├── LIF_model.py ├── QIF_model.py ├── __init__.py ├── __pycache__ │ ├── ExpIF_model.cpython-38.pyc │ ├── LIF_model.cpython-38.pyc │ ├── QIF_model.cpython-38.pyc │ └── __init__.cpython-38.pyc ├── cable_delay.py └── theta_model.py ├── requirements.txt └── synapse_models ├── AMPA.py ├── AMPA2.py ├── BCM.py ├── EPSC_IPSC.py ├── GABA_A.py ├── GABA_A2.py ├── GABA_B.py ├── GapJunction.py ├── Hebb.py ├── NMDA.py ├── NMDA2.py ├── NMDA3.py ├── Oja.py ├── STDP.py ├── STP.py ├── __init__.py ├── alpha.py ├── delta.py ├── dual_exponential.py ├── exponential.py ├── hebb_oja_compare.py ├── plot_stdp.py └── run_synapse.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/c-xy17/NeuralModeling/HEAD/.gitignore -------------------------------------------------------------------------------- /Homework _Aug_25.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/c-xy17/NeuralModeling/HEAD/Homework _Aug_25.ipynb -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/c-xy17/NeuralModeling/HEAD/README.md -------------------------------------------------------------------------------- /figs/poster.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/c-xy17/NeuralModeling/HEAD/figs/poster.jpg -------------------------------------------------------------------------------- /network_models/CANN.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/c-xy17/NeuralModeling/HEAD/network_models/CANN.py -------------------------------------------------------------------------------- /network_models/EI_balance_network.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/c-xy17/NeuralModeling/HEAD/network_models/EI_balance_network.py -------------------------------------------------------------------------------- /network_models/EI_balance_network_Ecurrent.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/c-xy17/NeuralModeling/HEAD/network_models/EI_balance_network_Ecurrent.py -------------------------------------------------------------------------------- /network_models/ESN.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/c-xy17/NeuralModeling/HEAD/network_models/ESN.py -------------------------------------------------------------------------------- /network_models/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /network_models/decision_making_rate_model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/c-xy17/NeuralModeling/HEAD/network_models/decision_making_rate_model.py -------------------------------------------------------------------------------- /network_models/decision_making_spiking_model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/c-xy17/NeuralModeling/HEAD/network_models/decision_making_spiking_model.py -------------------------------------------------------------------------------- /neuron_models/AdEx_model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/c-xy17/NeuralModeling/HEAD/neuron_models/AdEx_model.py -------------------------------------------------------------------------------- /neuron_models/ExpIF_QIF_dudt_compare.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/c-xy17/NeuralModeling/HEAD/neuron_models/ExpIF_QIF_dudt_compare.py -------------------------------------------------------------------------------- /neuron_models/ExpIF_model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/c-xy17/NeuralModeling/HEAD/neuron_models/ExpIF_model.py -------------------------------------------------------------------------------- /neuron_models/FRNeuron.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/c-xy17/NeuralModeling/HEAD/neuron_models/FRNeuron.py -------------------------------------------------------------------------------- /neuron_models/GIF_model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/c-xy17/NeuralModeling/HEAD/neuron_models/GIF_model.py -------------------------------------------------------------------------------- /neuron_models/HH_generate_data.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/c-xy17/NeuralModeling/HEAD/neuron_models/HH_generate_data.py -------------------------------------------------------------------------------- /neuron_models/HH_mhn_V_curve.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/c-xy17/NeuralModeling/HEAD/neuron_models/HH_mhn_V_curve.py -------------------------------------------------------------------------------- /neuron_models/HH_model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/c-xy17/NeuralModeling/HEAD/neuron_models/HH_model.py -------------------------------------------------------------------------------- /neuron_models/HindmarshRose_model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/c-xy17/NeuralModeling/HEAD/neuron_models/HindmarshRose_model.py -------------------------------------------------------------------------------- /neuron_models/Izhikevich_model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/c-xy17/NeuralModeling/HEAD/neuron_models/Izhikevich_model.py -------------------------------------------------------------------------------- /neuron_models/LIF_model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/c-xy17/NeuralModeling/HEAD/neuron_models/LIF_model.py -------------------------------------------------------------------------------- /neuron_models/QIF_model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/c-xy17/NeuralModeling/HEAD/neuron_models/QIF_model.py -------------------------------------------------------------------------------- /neuron_models/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /neuron_models/__pycache__/ExpIF_model.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/c-xy17/NeuralModeling/HEAD/neuron_models/__pycache__/ExpIF_model.cpython-38.pyc -------------------------------------------------------------------------------- /neuron_models/__pycache__/LIF_model.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/c-xy17/NeuralModeling/HEAD/neuron_models/__pycache__/LIF_model.cpython-38.pyc -------------------------------------------------------------------------------- /neuron_models/__pycache__/QIF_model.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/c-xy17/NeuralModeling/HEAD/neuron_models/__pycache__/QIF_model.cpython-38.pyc -------------------------------------------------------------------------------- /neuron_models/__pycache__/__init__.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/c-xy17/NeuralModeling/HEAD/neuron_models/__pycache__/__init__.cpython-38.pyc -------------------------------------------------------------------------------- /neuron_models/cable_delay.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/c-xy17/NeuralModeling/HEAD/neuron_models/cable_delay.py -------------------------------------------------------------------------------- /neuron_models/theta_model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/c-xy17/NeuralModeling/HEAD/neuron_models/theta_model.py -------------------------------------------------------------------------------- /requirements.txt: -------------------------------------------------------------------------------- 1 | brainpy>=2.2.0 -------------------------------------------------------------------------------- /synapse_models/AMPA.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/c-xy17/NeuralModeling/HEAD/synapse_models/AMPA.py -------------------------------------------------------------------------------- /synapse_models/AMPA2.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/c-xy17/NeuralModeling/HEAD/synapse_models/AMPA2.py -------------------------------------------------------------------------------- /synapse_models/BCM.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/c-xy17/NeuralModeling/HEAD/synapse_models/BCM.py -------------------------------------------------------------------------------- /synapse_models/EPSC_IPSC.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/c-xy17/NeuralModeling/HEAD/synapse_models/EPSC_IPSC.py -------------------------------------------------------------------------------- /synapse_models/GABA_A.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/c-xy17/NeuralModeling/HEAD/synapse_models/GABA_A.py -------------------------------------------------------------------------------- /synapse_models/GABA_A2.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/c-xy17/NeuralModeling/HEAD/synapse_models/GABA_A2.py -------------------------------------------------------------------------------- /synapse_models/GABA_B.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/c-xy17/NeuralModeling/HEAD/synapse_models/GABA_B.py -------------------------------------------------------------------------------- /synapse_models/GapJunction.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/c-xy17/NeuralModeling/HEAD/synapse_models/GapJunction.py -------------------------------------------------------------------------------- /synapse_models/Hebb.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/c-xy17/NeuralModeling/HEAD/synapse_models/Hebb.py -------------------------------------------------------------------------------- /synapse_models/NMDA.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/c-xy17/NeuralModeling/HEAD/synapse_models/NMDA.py -------------------------------------------------------------------------------- /synapse_models/NMDA2.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/c-xy17/NeuralModeling/HEAD/synapse_models/NMDA2.py -------------------------------------------------------------------------------- /synapse_models/NMDA3.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/c-xy17/NeuralModeling/HEAD/synapse_models/NMDA3.py -------------------------------------------------------------------------------- /synapse_models/Oja.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/c-xy17/NeuralModeling/HEAD/synapse_models/Oja.py -------------------------------------------------------------------------------- /synapse_models/STDP.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/c-xy17/NeuralModeling/HEAD/synapse_models/STDP.py -------------------------------------------------------------------------------- /synapse_models/STP.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/c-xy17/NeuralModeling/HEAD/synapse_models/STP.py -------------------------------------------------------------------------------- /synapse_models/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /synapse_models/alpha.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/c-xy17/NeuralModeling/HEAD/synapse_models/alpha.py -------------------------------------------------------------------------------- /synapse_models/delta.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/c-xy17/NeuralModeling/HEAD/synapse_models/delta.py -------------------------------------------------------------------------------- /synapse_models/dual_exponential.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/c-xy17/NeuralModeling/HEAD/synapse_models/dual_exponential.py -------------------------------------------------------------------------------- /synapse_models/exponential.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/c-xy17/NeuralModeling/HEAD/synapse_models/exponential.py -------------------------------------------------------------------------------- /synapse_models/hebb_oja_compare.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/c-xy17/NeuralModeling/HEAD/synapse_models/hebb_oja_compare.py -------------------------------------------------------------------------------- /synapse_models/plot_stdp.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/c-xy17/NeuralModeling/HEAD/synapse_models/plot_stdp.py -------------------------------------------------------------------------------- /synapse_models/run_synapse.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/c-xy17/NeuralModeling/HEAD/synapse_models/run_synapse.py --------------------------------------------------------------------------------