├── .Rbuildignore ├── .gitignore ├── .hgignore ├── .travis.yml ├── DESCRIPTION ├── LICENSE ├── NAMESPACE ├── R └── cgdsr.R ├── README.md ├── cgdsr.Rproj ├── inst └── tests │ └── test_cgdsr.R ├── man ├── cgdsr-CGDS.Rd ├── cgdsr-getCancerStudies.Rd ├── cgdsr-getCaseLists.Rd ├── cgdsr-getClinicalData.Rd ├── cgdsr-getGeneticProfiles.Rd ├── cgdsr-getMutationData.Rd ├── cgdsr-getProfileData.Rd ├── cgdsr-package.Rd ├── cgdsr-plot.Rd ├── cgdsr-processURL.Rd ├── cgdsr-setPlotErrorMsg.Rd ├── cgdsr-setVerbose.Rd └── cgdsr-test.Rd ├── tests └── runTests.R └── vignettes └── cgdsr.Rnw /.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cBioPortal/cgdsr/HEAD/.Rbuildignore -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cBioPortal/cgdsr/HEAD/.gitignore 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