├── .gitignore ├── LICENSE ├── README.md ├── data ├── hdf │ └── README.md └── pickle │ └── README.md ├── environment.yml ├── figures └── README ├── models ├── aln │ ├── aln-precalc │ │ ├── README │ │ ├── precompute_quantities │ │ │ ├── calculate_quantities_cascade.py │ │ │ ├── methods_cascade.py │ │ │ └── params.py │ │ └── quantities_cascade.h5 │ ├── defaultParameters.py │ └── timeIntegration.py ├── brian2 │ ├── loadparams.py │ ├── network_sim.py │ ├── utils.py │ └── utils_net.py └── utils │ ├── aEIF_extended.py │ ├── fitparams.py │ ├── functions.py │ ├── paths.py │ ├── pypet_parameters.py │ └── runModels.py ├── notebooks ├── fig2 │ ├── bifurcation-diagrams-aln-adex.ipynb │ └── timeseries.ipynb ├── fig3 │ ├── adex-grid-adaptation-bifurcation.ipynb │ └── aln-grid-adaptation-bifurcation.ipynb ├── fig4 │ └── stimulus_aln-adex.ipynb ├── fig5 │ └── frequency-entrainment-aln-adex.ipynb ├── fig6 │ └── phase-entrainment-aln-adex.ipynb └── supplementary │ ├── 1v-per-m-field-effect-on-resting-potential.ipynb │ ├── adex-grid-J-bifurcation.ipynb │ ├── aln-grid-J-bifurcation.ipynb │ ├── electric-field-amplitudes.ipynb │ ├── finite_size_effect_on_bifurcation_diagrams.ipynb │ ├── finite_size_effect_on_oscillation.ipynb │ ├── plot-transfer-functions.ipynb │ └── spiking_network_microscopic_dynamics.ipynb └── resources ├── figure1.jpg ├── figure2.jpg ├── figure3.jpg └── figure4.jpg /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/caglarcakan/stimulus_neural_populations/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/caglarcakan/stimulus_neural_populations/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: 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