├── .Rbuildignore ├── .github ├── .gitignore └── workflows │ └── R-CMD-check.yaml ├── .gitignore ├── CRAN-RELEASE ├── DESCRIPTION ├── LICENSE ├── NAMESPACE ├── R ├── classes.R ├── data.R ├── impulse_fitting.R ├── impulse_plotting.R ├── model_comparison.R └── simulation.R ├── README.Rmd ├── README.md ├── cran-comments.md ├── data └── example_timecourse.rda ├── impulse.Rproj ├── man ├── auto_config_tf.Rd ├── estimate_one_timecourse_params_tf.Rd ├── estimate_timecourse_params_tf.Rd ├── example_timecourse.Rd ├── figures │ ├── README-sigmoid_impulse_compare-1.png │ ├── impulse.png │ └── sigmoid.png ├── fit_timecourse.Rd ├── impulse_sigmoid_comparison.Rd ├── kinetics_plotting.Rd ├── reduce_best_timecourse_params.Rd ├── simulate_parameters.Rd ├── simulate_timecourses.Rd └── validate_priors.Rd ├── tests ├── testthat.R └── testthat │ └── test-impulse_fitting.R └── vignettes ├── .gitignore ├── fitting-timecourses.Rmd └── setting-priors.Rmd /.Rbuildignore: 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