├── .gitignore ├── NAMESPACE ├── .Rbuildignore ├── data ├── emt.rda ├── hypoxia.rda ├── invasion.rda ├── stemness.rda ├── apoptosis.rda ├── cell_cycle.rda ├── dna_damage.rda ├── dna_repair.rda ├── metastasis.rda ├── quiescence.rda ├── angiogenesis.rda ├── inflammation.rda ├── proliferation.rda ├── differentiation.rda └── available_pathways.rda ├── man ├── available_pathways.Rd └── cancersea.Rd ├── DESCRIPTION ├── vignettes └── cancerseavignette.Rmd ├── data-raw ├── cancersea-data-build.R ├── Apoptosis.txt ├── Quiescence.txt ├── Angiogenesis.txt ├── Hypoxia.txt ├── Proliferation.txt ├── EMT.txt ├── Invasion.txt ├── DNA_damage.txt ├── Inflammation.txt ├── DNA_repair.txt ├── Cell_Cycle.txt ├── Metastasis.txt ├── Stemness.txt └── Differentiation.txt ├── README.md └── R └── cancersea.R /.gitignore: -------------------------------------------------------------------------------- 1 | inst/doc 2 | -------------------------------------------------------------------------------- /NAMESPACE: -------------------------------------------------------------------------------- 1 | # Generated by roxygen2: do not edit by hand 2 | 3 | -------------------------------------------------------------------------------- /.Rbuildignore: -------------------------------------------------------------------------------- 1 | ^.*\.Rproj$ 2 | ^\.Rproj\.user$ 3 | ^data-raw$ 4 | -------------------------------------------------------------------------------- /data/emt.rda: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/camlab-bioml/cancersea/HEAD/data/emt.rda -------------------------------------------------------------------------------- /data/hypoxia.rda: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/camlab-bioml/cancersea/HEAD/data/hypoxia.rda -------------------------------------------------------------------------------- /data/invasion.rda: 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/data/differentiation.rda: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/camlab-bioml/cancersea/HEAD/data/differentiation.rda -------------------------------------------------------------------------------- /data/available_pathways.rda: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/camlab-bioml/cancersea/HEAD/data/available_pathways.rda -------------------------------------------------------------------------------- /man/available_pathways.Rd: -------------------------------------------------------------------------------- 1 | % Generated by roxygen2: do not edit by hand 2 | % Please edit documentation in R/cancersea.R 3 | \docType{data} 4 | \name{available_pathways} 5 | \alias{available_pathways} 6 | \title{Available cancer-related pathways in this package} 7 | \format{An object of class \code{character} of length 14.} 8 | \usage{ 9 | available_pathways 10 | } 11 | \description{ 12 | Available cancer-related pathways in this package 13 | } 14 | \keyword{datasets} 15 | -------------------------------------------------------------------------------- /DESCRIPTION: -------------------------------------------------------------------------------- 1 | Package: cancersea 2 | Type: Package 3 | Title: Curated gene sets from CancerSEA 4 | Version: 0.1.0 5 | Authors@R: person("Kieran", "Campbell", email = "kieranrcampbell@gmail.com", role = c("aut", "cre")) 6 | Description: Contains curated gene sets as tibbles from the CancerSEA database 7 | (http://biocc.hrbmu.edu.cn/CancerSEA/goDownload) 8 | License: N/A 9 | Encoding: UTF-8 10 | LazyData: true 11 | RoxygenNote: 7.0.2 12 | Depends: 13 | tibble 14 | Suggests: 15 | knitr, 16 | rmarkdown 17 | VignetteBuilder: knitr 18 | -------------------------------------------------------------------------------- /vignettes/cancerseavignette.Rmd: -------------------------------------------------------------------------------- 1 | --- 2 | title: "CancerSEA curated gene sets" 3 | output: rmarkdown::html_vignette 4 | vignette: > 5 | %\VignetteIndexEntry{CancerSEA curated gene sets} 6 | %\VignetteEngine{knitr::rmarkdown} 7 | %\VignetteEncoding{UTF-8} 8 | --- 9 | 10 | ```{r, include = FALSE} 11 | knitr::opts_chunk$set( 12 | collapse = TRUE, 13 | comment = "#>" 14 | ) 15 | ``` 16 | 17 | ```{r setup} 18 | suppressPackageStartupMessages({ 19 | library(cancersea) 20 | library(tibble) 21 | }) 22 | ``` 23 | 24 | # Find available pathways 25 | 26 | ```{r} 27 | data("available_pathways") 28 | available_pathways 29 | ``` 30 | 31 | # Get the gene se for a given pathway 32 | 33 | Note that genes are only those positively associated with each pathway (ie upregulated). 34 | 35 | ```{r} 36 | data("angiogenesis") 37 | angiogenesis 38 | ``` 39 | 40 | # Technical 41 | 42 | ```{r} 43 | sessionInfo() 44 | ``` 45 | 46 | -------------------------------------------------------------------------------- /data-raw/cancersea-data-build.R: -------------------------------------------------------------------------------- 1 | 2 | ## To be run in package root 3 | 4 | 5 | #' Build the lists from the raw data files downloaded from 6 | #' http://biocc.hrbmu.edu.cn/CancerSEA/goDownload 7 | 8 | library(stringr) 9 | library(readr) 10 | 11 | read_one_pathway <- function(path) { 12 | df <- read_tsv(path) 13 | names(df) <- c("ensembl_gene_id", "symbol") 14 | df 15 | } 16 | 17 | base_dir <- 'data-raw' 18 | 19 | files <- dir(base_dir, pattern = 'txt') 20 | 21 | pathway_names <- sub(".txt", "", files, fixed = TRUE) 22 | pathway_names <- str_to_lower(pathway_names) 23 | 24 | dfs <- lapply(file.path(base_dir, files), read_one_pathway) 25 | names(dfs) <- pathway_names 26 | 27 | for(p in seq_along(dfs)) { 28 | assign(pathway_names[p], dfs[[p]]) 29 | save(list = pathway_names[p], file = file.path("data", paste0(pathway_names[p], ".rda"))) 30 | } 31 | 32 | available_pathways <- pathway_names 33 | 34 | save(available_pathways, file = "data/available_pathways.rda") 35 | 36 | 37 | 38 | -------------------------------------------------------------------------------- /man/cancersea.Rd: -------------------------------------------------------------------------------- 1 | % Generated by roxygen2: do not edit by hand 2 | % Please edit documentation in R/cancersea.R 3 | \docType{data} 4 | \name{angiogenesis} 5 | \alias{angiogenesis} 6 | \alias{apoptosis} 7 | \alias{cell_cycle} 8 | \alias{differentiation} 9 | \alias{dna_damage} 10 | \alias{dna_repair} 11 | \alias{emt} 12 | \alias{hypoxia} 13 | \alias{inflammation} 14 | \alias{invasion} 15 | \alias{metastasis} 16 | \alias{proliferation} 17 | \alias{quiescence} 18 | \alias{stemness} 19 | \title{Curated CancerSEA gene sets} 20 | \format{A tibble with columns ensembl_gene_id and symbol} 21 | \source{ 22 | \url{http://biocc.hrbmu.edu.cn/CancerSEA/goDownload} 23 | } 24 | \usage{ 25 | angiogenesis 26 | 27 | apoptosis 28 | 29 | cell_cycle 30 | 31 | differentiation 32 | 33 | dna_damage 34 | 35 | dna_repair 36 | 37 | emt 38 | 39 | hypoxia 40 | 41 | inflammation 42 | 43 | invasion 44 | 45 | metastasis 46 | 47 | proliferation 48 | 49 | quiescence 50 | 51 | stemness 52 | } 53 | \description{ 54 | To load, call \code{data(pathway_name)}. 55 | } 56 | \keyword{datasets} 57 | -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- 1 | # cancersea: a simple R data package for curated cancer pathway-specific gene lists 2 | 3 | A curated package of gene sets involved in cancer biology, taken from the CancerSEA database at http://biocc.hrbmu.edu.cn/CancerSEA/goDownload 4 | 5 | Note that genes are those positively correlated (ie upregulated) with each process. 6 | 7 | ## Getting started 8 | 9 | View avilable pathways: 10 | 11 | ```r 12 | library(cancersea) 13 | data('available_pathways') 14 | available_pathways 15 | 16 | [1] "angiogenesis" "apoptosis" "cell_cycle" "differentiation" "dna_damage" 17 | [6] "dna_repair" "emt" "hypoxia" "inflammation" "invasion" 18 | [11] "metastasis" "proliferation" "quiescence" "stemness" 19 | ``` 20 | 21 | Then view a particular pathway: 22 | 23 | ```r 24 | data('angiogenesis') 25 | 26 | # A tibble: 6 x 2 27 | ensembl_gene_id symbol 28 | 29 | 1 ENSG00000139567 ACVRL1 30 | 2 ENSG00000101384 JAG1 31 | 3 ENSG00000154188 ANGPT1 32 | 4 ENSG00000091879 ANGPT2 33 | 5 ENSG00000174059 CD34 34 | 6 ENSG00000070831 CDC42 35 | ``` 36 | 37 | 38 | -------------------------------------------------------------------------------- /R/cancersea.R: -------------------------------------------------------------------------------- 1 | 2 | #' Available cancer-related pathways in this package 3 | #' 4 | #' 5 | "available_pathways" 6 | 7 | #' Curated CancerSEA gene sets 8 | #' 9 | #' To load, call \code{data(pathway_name)}. 10 | #' 11 | #' 12 | #' @format A tibble with columns ensembl_gene_id and symbol 13 | #' 14 | #' @source \url{http://biocc.hrbmu.edu.cn/CancerSEA/goDownload} 15 | #' 16 | #' @rdname cancersea 17 | "angiogenesis" 18 | 19 | #' Curated CancerSEA gene sets 20 | #' @rdname cancersea 21 | "apoptosis" 22 | 23 | #' Curated CancerSEA gene sets 24 | #' @rdname cancersea 25 | "cell_cycle" 26 | 27 | #' Curated CancerSEA gene sets 28 | #' @rdname cancersea 29 | "differentiation" 30 | 31 | #' Curated CancerSEA gene sets 32 | #' @rdname cancersea 33 | "dna_damage" 34 | 35 | #' Curated CancerSEA gene sets 36 | #' @rdname cancersea 37 | "dna_repair" 38 | 39 | #' Curated CancerSEA gene sets 40 | #' @rdname cancersea 41 | "emt" 42 | 43 | #' Curated CancerSEA gene sets 44 | #' @rdname cancersea 45 | "hypoxia" 46 | 47 | #' Curated CancerSEA gene sets 48 | #' @rdname cancersea 49 | "inflammation" 50 | 51 | #' Curated CancerSEA gene sets 52 | #' @rdname cancersea 53 | "invasion" 54 | 55 | #' Curated CancerSEA gene sets 56 | #' @rdname cancersea 57 | "metastasis" 58 | 59 | #' Curated CancerSEA gene sets 60 | #' @rdname cancersea 61 | "proliferation" 62 | 63 | #' Curated CancerSEA gene sets 64 | #' @rdname cancersea 65 | "quiescence" 66 | 67 | #' Curated CancerSEA gene sets 68 | #' @rdname cancersea 69 | "stemness" 70 | -------------------------------------------------------------------------------- /data-raw/Apoptosis.txt: -------------------------------------------------------------------------------- 1 | EnsembleID GeneName 2 | ENSG00000120868 APAF1 3 | ENSG00000128272 ATF4 4 | ENSG00000149311 ATM 5 | ENSG00000030110 BAK1 6 | ENSG00000015475 BID 7 | ENSG00000176720 BOK 8 | ENSG00000139618 BRCA2 9 | ENSG00000106144 CASP2 10 | ENSG00000196954 CASP4 11 | ENSG00000132906 CASP9 12 | ENSG00000167657 DAPK3 13 | ENSG00000175197 DDIT3 14 | ENSG00000007968 E2F2 15 | ENSG00000100393 EP300 16 | ENSG00000148180 GSN 17 | ENSG00000163565 IFI16 18 | ENSG00000122641 INHBA 19 | ENSG00000170421 KRT8 20 | ENSG00000168961 LGALS9 21 | ENSG00000100968 NFATC4 22 | ENSG00000089041 P2RX7 23 | ENSG00000141682 PMAIP1 24 | ENSG00000070501 POLB 25 | ENSG00000137713 PPP2R1B 26 | ENSG00000078304 PPP2R5C 27 | ENSG00000134243 SORT1 28 | ENSG00000136603 SKIL 29 | ENSG00000104375 STK3 30 | ENSG00000101109 STK4 31 | ENSG00000100234 TIMP3 32 | ENSG00000067182 TNFRSF1A 33 | ENSG00000028137 TNFRSF1B 34 | ENSG00000143514 TP53BP2 35 | ENSG00000127334 DYRK2 36 | ENSG00000169372 CRADD 37 | ENSG00000142867 BCL10 38 | ENSG00000156709 AIFM1 39 | ENSG00000153094 BCL2L11 40 | ENSG00000087470 DNM1L 41 | ENSG00000185825 BCAP31 42 | ENSG00000184990 SIVA1 43 | ENSG00000213190 MLLT11 44 | ENSG00000129465 RIPK3 45 | ENSG00000100603 SNW1 46 | ENSG00000088808 PPP1R13B 47 | ENSG00000174307 PHLDA3 48 | ENSG00000176046 NUPR1 49 | ENSG00000105327 BBC3 50 | ENSG00000136305 CIDEB 51 | ENSG00000146072 TNFRSF21 52 | ENSG00000103490 PYCARD 53 | ENSG00000089486 CDIP1 54 | ENSG00000123689 G0S2 55 | ENSG00000164054 SHISA5 56 | ENSG00000006327 TNFRSF12A 57 | ENSG00000186153 WWOX 58 | ENSG00000168209 DDIT4 59 | ENSG00000048028 USP28 60 | ENSG00000165943 MOAP1 61 | ENSG00000181026 AEN 62 | ENSG00000110108 TMEM109 63 | ENSG00000256053 APOPT1 64 | ENSG00000104081 BMF 65 | ENSG00000136848 DAB2IP 66 | ENSG00000160570 DEDD2 67 | ENSG00000180953 ST20 68 | -------------------------------------------------------------------------------- /data-raw/Quiescence.txt: -------------------------------------------------------------------------------- 1 | EnsembleID GeneName 2 | ENSG00000012779 ALOX5 3 | ENSG00000164111 ANXA5 4 | ENSG00000109321 AREG 5 | ENSG00000095794 CREM 6 | ENSG00000145708 CRHBP 7 | ENSG00000134531 EMP1 8 | ENSG00000126860 EVI2A 9 | ENSG00000162645 GBP2 10 | ENSG00000163739 CXCL1 11 | ENSG00000081041 CXCL2 12 | ENSG00000163734 CXCL3 13 | ENSG00000164116 GUCY1A1 14 | ENSG00000189060 H1F0 15 | ENSG00000244734 HBB 16 | ENSG00000136630 HLX 17 | ENSG00000125538 IL1B 18 | ENSG00000169429 CXCL8 19 | ENSG00000122641 INHBA 20 | ENSG00000169245 CXCL10 21 | ENSG00000177606 JUN 22 | ENSG00000169908 TM4SF1 23 | ENSG00000171843 MLLT3 24 | ENSG00000153234 NR4A2 25 | ENSG00000197632 SERPINB2 26 | ENSG00000184226 PCDH9 27 | ENSG00000183395 PMCH 28 | ENSG00000073756 PTGS2 29 | ENSG00000081237 PTPRC 30 | ENSG00000090104 RGS1 31 | ENSG00000112077 RHAG 32 | ENSG00000135452 TSPAN31 33 | ENSG00000108700 CCL8 34 | ENSG00000172724 CCL19 35 | ENSG00000115009 CCL20 36 | ENSG00000124875 CXCL6 37 | ENSG00000169248 CXCL11 38 | ENSG00000163735 CXCL5 39 | ENSG00000136527 TRA2B 40 | ENSG00000115306 SPTBN1 41 | ENSG00000197321 SVIL 42 | ENSG00000148737 TCF7L2 43 | ENSG00000003436 TFPI 44 | ENSG00000140682 TGFB1I1 45 | ENSG00000146242 TPBG 46 | ENSG00000117586 TNFSF4 47 | ENSG00000114416 FXR1 48 | ENSG00000180530 NRIP1 49 | ENSG00000180573 HIST1H2AC 50 | ENSG00000184678 HIST2H2BE 51 | ENSG00000110841 PPFIBP1 52 | ENSG00000121858 TNFSF10 53 | ENSG00000115604 IL18R1 54 | ENSG00000112299 VNN1 55 | ENSG00000115165 CYTIP 56 | ENSG00000123240 OPTN 57 | ENSG00000149573 MPZL2 58 | ENSG00000156234 CXCL13 59 | ENSG00000102908 NFAT5 60 | ENSG00000139278 GLIPR1 61 | ENSG00000157110 RBPMS 62 | ENSG00000187239 FNBP1 63 | ENSG00000185022 MAFF 64 | ENSG00000164548 TRA2A 65 | ENSG00000197253 TPSB2 66 | ENSG00000205189 ZBTB10 67 | ENSG00000197903 HIST1H2BK 68 | -------------------------------------------------------------------------------- /data-raw/Angiogenesis.txt: -------------------------------------------------------------------------------- 1 | EnsembleID GeneName 2 | ENSG00000139567 ACVRL1 3 | ENSG00000101384 JAG1 4 | ENSG00000154188 ANGPT1 5 | ENSG00000091879 ANGPT2 6 | ENSG00000174059 CD34 7 | ENSG00000070831 CDC42 8 | ENSG00000112062 MAPK14 9 | ENSG00000025708 TYMP 10 | ENSG00000078401 EDN1 11 | ENSG00000125266 EFNB2 12 | ENSG00000179388 EGR3 13 | ENSG00000196411 EPHB4 14 | ENSG00000120899 PTK2B 15 | ENSG00000138685 FGF2 16 | ENSG00000077782 FGFR1 17 | ENSG00000165197 VEGFD 18 | ENSG00000176692 FOXC2 19 | ENSG00000102755 FLT1 20 | ENSG00000037280 FLT4 21 | ENSG00000115414 FN1 22 | ENSG00000112293 GPLD1 23 | ENSG00000123358 NR4A1 24 | ENSG00000125968 ID1 25 | ENSG00000161638 ITGA5 26 | ENSG00000138448 ITGAV 27 | ENSG00000150093 ITGB1 28 | ENSG00000128052 KDR 29 | ENSG00000134013 LOXL2 30 | ENSG00000157227 MMP14 31 | ENSG00000148400 NOTCH1 32 | ENSG00000197461 PDGFA 33 | ENSG00000113721 PDGFRB 34 | ENSG00000119630 PGF 35 | ENSG00000121879 PIK3CA 36 | ENSG00000073756 PTGS2 37 | ENSG00000169398 PTK2 38 | ENSG00000169855 ROBO1 39 | ENSG00000160691 SHC1 40 | ENSG00000112658 SRF 41 | ENSG00000162367 TAL1 42 | ENSG00000241186 TDGF1 43 | ENSG00000120156 TEK 44 | ENSG00000160293 VAV2 45 | ENSG00000112715 VEGFA 46 | ENSG00000150630 VEGFC 47 | ENSG00000156427 FGF18 48 | ENSG00000099250 NRP1 49 | ENSG00000112902 SEMA5A 50 | ENSG00000131477 RAMP2 51 | ENSG00000185043 CIB1 52 | ENSG00000164283 ESM1 53 | ENSG00000070495 JMJD6 54 | ENSG00000164683 HEY1 55 | ENSG00000020181 ADGRA2 56 | ENSG00000166923 GREM1 57 | ENSG00000102359 SRPX2 58 | ENSG00000203883 SOX18 59 | ENSG00000197702 PARVA 60 | ENSG00000173821 RNF213 61 | ENSG00000129173 E2F8 62 | ENSG00000146374 RSPO3 63 | ENSG00000154124 OTULIN 64 | ENSG00000165891 E2F7 65 | ENSG00000183287 CCBE1 66 | ENSG00000164619 BMPER 67 | ENSG00000198435 NRARP 68 | ENSG00000123610 TNFAIP6 69 | ENSG00000038427 VCAN 70 | ENSG00000118785 SPP1 71 | ENSG00000118971 CCND2 72 | ENSG00000145675 PIK3R1 73 | ENSG00000159167 STC1 74 | ENSG00000184916 JAG2 75 | -------------------------------------------------------------------------------- /data-raw/Hypoxia.txt: -------------------------------------------------------------------------------- 1 | EnsembleID GeneName 2 | ENSG00000147872 PLIN2 3 | ENSG00000148926 ADM 4 | ENSG00000170425 ADORA2B 5 | ENSG00000162433 AK4 6 | ENSG00000109107 ALDOC 7 | ENSG00000214274 ANG 8 | ENSG00000162772 ATF3 9 | ENSG00000176171 BNIP3 10 | ENSG00000104765 BNIP3L 11 | ENSG00000107159 CA9 12 | ENSG00000074410 CA12 13 | ENSG00000105974 CAV1 14 | ENSG00000138764 CCNG2 15 | ENSG00000067082 KLF6 16 | ENSG00000120129 DUSP1 17 | ENSG00000169242 EFNA1 18 | ENSG00000111674 ENO2 19 | ENSG00000117525 F3 20 | ENSG00000170345 FOS 21 | ENSG00000113580 NR3C1 22 | ENSG00000104812 GYS1 23 | ENSG00000100644 HIF1A 24 | ENSG00000156515 HK1 25 | ENSG00000159399 HK2 26 | ENSG00000100292 HMOX1 27 | ENSG00000146674 IGFBP3 28 | ENSG00000136244 IL6 29 | ENSG00000177606 JUN 30 | ENSG00000134333 LDHA 31 | ENSG00000113083 LOX 32 | ENSG00000240972 MIF 33 | ENSG00000119950 MXI1 34 | ENSG00000165030 NFIL3 35 | ENSG00000122884 P4HA1 36 | ENSG00000106366 SERPINE1 37 | ENSG00000145730 PAM 38 | ENSG00000100311 PDGFB 39 | ENSG00000152256 PDK1 40 | ENSG00000170525 PFKFB3 41 | ENSG00000114268 PFKFB4 42 | ENSG00000067057 PFKP 43 | ENSG00000119630 PGF 44 | ENSG00000102144 PGK1 45 | ENSG00000079739 PGM1 46 | ENSG00000011422 PLAUR 47 | ENSG00000152952 PLOD2 48 | ENSG00000119938 PPP1R3C 49 | ENSG00000258818 RNASE4 50 | ENSG00000130066 SAT1 51 | ENSG00000117394 SLC2A1 52 | ENSG00000059804 SLC2A3 53 | ENSG00000061656 SPAG4 54 | ENSG00000159167 STC1 55 | ENSG00000120708 TGFBI 56 | ENSG00000111669 TPI1 57 | ENSG00000112715 VEGFA 58 | ENSG00000147852 VLDLR 59 | ENSG00000121966 CXCR4 60 | ENSG00000143847 PPFIA4 61 | ENSG00000134107 BHLHE40 62 | ENSG00000118263 KLF7 63 | ENSG00000113739 STC2 64 | ENSG00000164105 SAP30 65 | ENSG00000072682 P4HA2 66 | ENSG00000118804 STBD1 67 | ENSG00000131016 AKAP12 68 | ENSG00000164442 CITED2 69 | ENSG00000104419 NDRG1 70 | ENSG00000265972 TXNIP 71 | ENSG00000188994 ZNF292 72 | ENSG00000070495 JMJD6 73 | ENSG00000185022 MAFF 74 | ENSG00000114023 FAM162A 75 | ENSG00000135245 HILPDA 76 | ENSG00000197930 ERO1A 77 | ENSG00000167772 ANGPTL4 78 | ENSG00000168209 DDIT4 79 | ENSG00000135766 EGLN1 80 | ENSG00000114796 KLHL24 81 | ENSG00000181458 TMEM45A 82 | ENSG00000115548 KDM3A 83 | ENSG00000186918 ZNF395 84 | ENSG00000129521 EGLN3 85 | -------------------------------------------------------------------------------- /data-raw/Proliferation.txt: -------------------------------------------------------------------------------- 1 | EnsembleID GeneName 2 | ENSG00000156110 ADK 3 | ENSG00000087088 BAX 4 | ENSG00000110092 CCND1 5 | ENSG00000107779 BMPR1A 6 | ENSG00000156970 BUB1B 7 | ENSG00000145386 CCNA2 8 | ENSG00000134057 CCNB1 9 | ENSG00000101017 CD40 10 | ENSG00000170312 CDK1 11 | ENSG00000117399 CDC20 12 | ENSG00000051523 CYBA 13 | ENSG00000164104 HMGB2 14 | ENSG00000115457 IGFBP2 15 | ENSG00000148773 MKI67 16 | ENSG00000184304 PRKD1 17 | ENSG00000120156 TEK 18 | ENSG00000167900 TK1 19 | ENSG00000131747 TOP2A 20 | ENSG00000126787 DLGAP5 21 | ENSG00000165304 MELK 22 | ENSG00000101003 GINS1 23 | ENSG00000118193 KIF14 24 | ENSG00000161800 RACGAP1 25 | ENSG00000066279 ASPM 26 | ENSG00000272398 CD24 27 | ENSG00000006210 CX3CL1 28 | ENSG00000017427 IGF1 29 | ENSG00000019582 CD74 30 | ENSG00000073282 TP63 31 | ENSG00000077782 FGFR1 32 | ENSG00000080166 DCT 33 | ENSG00000081237 PTPRC 34 | ENSG00000089116 LHX5 35 | ENSG00000091831 ESR1 36 | ENSG00000097007 ABL1 37 | ENSG00000100219 XBP1 38 | ENSG00000100311 PDGFB 39 | ENSG00000100644 HIF1A 40 | ENSG00000102245 CD40LG 41 | ENSG00000102678 FGF9 42 | ENSG00000104290 FZD3 43 | ENSG00000104312 RIPK2 44 | ENSG00000105245 NUMBL 45 | ENSG00000105246 EBI3 46 | ENSG00000105989 WNT2 47 | ENSG00000109471 IL2 48 | ENSG00000110944 IL23A 49 | ENSG00000112715 VEGFA 50 | ENSG00000112902 SEMA5A 51 | ENSG00000113520 IL4 52 | ENSG00000114013 CD86 53 | ENSG00000115415 STAT1 54 | ENSG00000115738 ID2 55 | ENSG00000116641 DOCK7 56 | ENSG00000117090 SLAMF1 57 | ENSG00000117586 TNFSF4 58 | ENSG00000125084 WNT1 59 | ENSG00000125657 TNFSF9 60 | ENSG00000125686 MED1 61 | ENSG00000128602 SMO 62 | ENSG00000136869 TLR4 63 | ENSG00000136997 MYC 64 | ENSG00000138795 LEF1 65 | ENSG00000139352 ASCL1 66 | ENSG00000140285 FGF7 67 | ENSG00000143867 OSR1 68 | ENSG00000150782 IL18 69 | ENSG00000154342 WNT3A 70 | ENSG00000154764 WNT7A 71 | ENSG00000162946 DISC1 72 | ENSG00000163217 BMP10 73 | ENSG00000165025 SYK 74 | ENSG00000169194 IL13 75 | ENSG00000171791 BCL2 76 | ENSG00000172201 ID4 77 | ENSG00000173757 STAT5B 78 | ENSG00000174059 CD34 79 | ENSG00000178971 CTC1 80 | ENSG00000184058 TBX1 81 | ENSG00000185950 IRS2 82 | ENSG00000186827 TNFRSF4 83 | ENSG00000189403 HMGB1 84 | ENSG00000198026 ZNF335 85 | ENSG00000198435 NRARP 86 | ENSG00000204217 BMPR2 87 | ENSG00000204305 AGER 88 | ENSG00000240972 MIF 89 | ENSG00000271503 CCL5 90 | -------------------------------------------------------------------------------- /data-raw/EMT.txt: -------------------------------------------------------------------------------- 1 | EnsembleID GeneName 2 | ENSG00000182492 BGN 3 | ENSG00000140937 CDH11 4 | ENSG00000170558 CDH2 5 | ENSG00000164692 COL1A2 6 | ENSG00000168542 COL3A1 7 | ENSG00000204262 COL5A2 8 | ENSG00000118523 CTGF 9 | ENSG00000162733 DDR2 10 | ENSG00000143369 ECM1 11 | ENSG00000078098 FAP 12 | ENSG00000140092 FBLN5 13 | ENSG00000166147 FBN1 14 | ENSG00000176692 FOXC2 15 | ENSG00000163430 FSTL1 16 | ENSG00000133937 GSC 17 | ENSG00000170961 HAS2 18 | ENSG00000141753 IGFBP4 19 | ENSG00000196611 MMP1 20 | ENSG00000087245 MMP2 21 | ENSG00000101335 MYL9 22 | ENSG00000175745 NR2F1 23 | ENSG00000106333 PCOLCE 24 | ENSG00000133110 POSTN 25 | ENSG00000116132 PRRX1 26 | ENSG00000163661 PTX3 27 | ENSG00000117152 RGS4 28 | ENSG00000124216 SNAI1 29 | ENSG00000152377 SPOCK1 30 | ENSG00000149591 TAGLN 31 | ENSG00000167552 TUBA1A 32 | ENSG00000122691 TWIST1 33 | ENSG00000026025 VIM 34 | ENSG00000114251 WNT5A 35 | ENSG00000107796 ACTA2 36 | ENSG00000012048 BRCA1 37 | ENSG00000149257 SERPINH1 38 | ENSG00000115163 CENPA 39 | ENSG00000108821 COL1A1 40 | ENSG00000187498 COL4A1 41 | ENSG00000142173 COL6A2 42 | ENSG00000038427 VCAN 43 | ENSG00000164733 CTSB 44 | ENSG00000153071 DAB2 45 | ENSG00000156136 DCK 46 | ENSG00000163520 FBLN2 47 | ENSG00000115414 FN1 48 | ENSG00000180447 GAS1 49 | ENSG00000100644 HIF1A 50 | ENSG00000072571 HMMR 51 | ENSG00000041982 TNC 52 | ENSG00000138448 ITGAV 53 | ENSG00000139329 LUM 54 | ENSG00000112118 MCM3 55 | ENSG00000166508 MCM7 56 | ENSG00000148773 MKI67 57 | ENSG00000157227 MMP14 58 | ENSG00000135318 NT5E 59 | ENSG00000115758 ODC1 60 | ENSG00000134853 PDGFRA 61 | ENSG00000011422 PLAUR 62 | ENSG00000168938 PPIC 63 | ENSG00000166033 HTRA1 64 | ENSG00000080839 RBL1 65 | ENSG00000124875 CXCL6 66 | ENSG00000115884 SDC1 67 | ENSG00000137575 SDCBP 68 | ENSG00000102265 TIMP1 69 | ENSG00000171617 ENC1 70 | ENSG00000258947 TUBB3 71 | ENSG00000142731 PLK4 72 | ENSG00000091651 ORC6 73 | ENSG00000011426 ANLN 74 | ENSG00000162545 CAMK2N1 75 | ENSG00000145293 ENOPH1 76 | ENSG00000026508 CD44 77 | ENSG00000134013 LOXL2 78 | ENSG00000069702 TGFBR3 79 | ENSG00000002745 WNT16 80 | ENSG00000105989 WNT2 81 | ENSG00000106799 TGFBR1 82 | ENSG00000107831 FGF8 83 | ENSG00000115109 EPB41L5 84 | ENSG00000130558 OLFM1 85 | ENSG00000135547 HEY2 86 | ENSG00000138795 LEF1 87 | ENSG00000157554 ERG 88 | ENSG00000164683 HEY1 89 | ENSG00000166292 TMEM100 90 | ENSG00000169242 EFNA1 91 | ENSG00000196154 S100A4 92 | -------------------------------------------------------------------------------- /data-raw/Invasion.txt: -------------------------------------------------------------------------------- 1 | EnsembleID GeneName 2 | ENSG00000106624 AEBP1 3 | ENSG00000085662 AKR1B1 4 | ENSG00000123505 AMD1 5 | ENSG00000005022 SLC25A5 6 | ENSG00000116459 ATP5PB 7 | ENSG00000107262 BAG1 8 | ENSG00000182492 BGN 9 | ENSG00000173369 C1QB 10 | ENSG00000122786 CALD1 11 | ENSG00000042493 CAPG 12 | ENSG00000105173 CCNE1 13 | ENSG00000140937 CDH11 14 | ENSG00000173207 CKS1B 15 | ENSG00000123975 CKS2 16 | ENSG00000108821 COL1A1 17 | ENSG00000164692 COL1A2 18 | ENSG00000168542 COL3A1 19 | ENSG00000130635 COL5A1 20 | ENSG00000204262 COL5A2 21 | ENSG00000142173 COL6A2 22 | ENSG00000163359 COL6A3 23 | ENSG00000123500 COL10A1 24 | ENSG00000060718 COL11A1 25 | ENSG00000105664 COMP 26 | ENSG00000124207 CSE1L 27 | ENSG00000038427 VCAN 28 | ENSG00000143387 CTSK 29 | ENSG00000153071 DAB2 30 | ENSG00000108654 DDX5 31 | ENSG00000151617 EDNRA 32 | ENSG00000078098 FAP 33 | ENSG00000166147 FBN1 34 | ENSG00000115414 FN1 35 | ENSG00000087460 GNAS 36 | ENSG00000164032 H2AFZ 37 | ENSG00000164104 HMGB2 38 | ENSG00000153187 HNRNPU 39 | ENSG00000133835 HSD17B4 40 | ENSG00000142871 CYR61 41 | ENSG00000122641 INHBA 42 | ENSG00000091136 LAMB1 43 | ENSG00000135862 LAMC1 44 | ENSG00000100097 LGALS1 45 | ENSG00000113083 LOX 46 | ENSG00000134013 LOXL2 47 | ENSG00000139329 LUM 48 | ENSG00000087245 MMP2 49 | ENSG00000099953 MMP11 50 | ENSG00000099783 HNRNPM 51 | ENSG00000099795 NDUFB7 52 | ENSG00000065978 YBX1 53 | ENSG00000113721 PDGFRB 54 | ENSG00000122861 PLAU 55 | ENSG00000116132 PRRX1 56 | ENSG00000100941 PNN 57 | ENSG00000168938 PPIC 58 | ENSG00000184500 PROS1 59 | ENSG00000106588 PSMA2 60 | ENSG00000159377 PSMB4 61 | ENSG00000117152 RGS4 62 | ENSG00000019549 SNAI2 63 | ENSG00000152377 SPOCK1 64 | ENSG00000120708 TGFBI 65 | ENSG00000186340 THBS2 66 | ENSG00000154096 THY1 67 | ENSG00000123610 TNFAIP6 68 | ENSG00000169139 UBE2V2 69 | ENSG00000148848 ADAM12 70 | ENSG00000197614 MFAP5 71 | ENSG00000198542 ITGBL1 72 | ENSG00000115129 TP53I3 73 | ENSG00000074590 NUAK1 74 | ENSG00000152795 HNRNPDL 75 | ENSG00000115514 TXNDC9 76 | ENSG00000128606 LRRC17 77 | ENSG00000216490 IFI30 78 | ENSG00000133110 POSTN 79 | ENSG00000108468 CBX1 80 | ENSG00000087303 NID2 81 | ENSG00000133818 RRAS2 82 | ENSG00000125970 RALY 83 | ENSG00000179918 SEPHS2 84 | ENSG00000164683 HEY1 85 | ENSG00000101825 MXRA5 86 | ENSG00000162745 OLFML2B 87 | ENSG00000249992 TMEM158 88 | ENSG00000018408 WWTR1 89 | ENSG00000166923 GREM1 90 | ENSG00000086991 NOX4 91 | ENSG00000111729 CLEC4A 92 | ENSG00000005243 COPZ2 93 | ENSG00000106819 ASPN 94 | ENSG00000103888 CEMIP 95 | ENSG00000103196 CRISPLD2 96 | ENSG00000176014 TUBB6 97 | ENSG00000172061 LRRC15 98 | ENSG00000196230 TUBB 99 | -------------------------------------------------------------------------------- /data-raw/DNA_damage.txt: -------------------------------------------------------------------------------- 1 | EnsembleID GeneName 2 | ENSG00000012048 BRCA1 3 | ENSG00000020922 MRE11 4 | ENSG00000053254 FOXN3 5 | ENSG00000064393 HIPK2 6 | ENSG00000067066 SP100 7 | ENSG00000068878 PSME4 8 | ENSG00000072133 RPS6KA6 9 | ENSG00000073282 TP63 10 | ENSG00000075218 GTSE1 11 | ENSG00000078304 PPP2R5C 12 | ENSG00000078900 TP73 13 | ENSG00000080802 CNOT4 14 | ENSG00000086061 DNAJA1 15 | ENSG00000087088 BAX 16 | ENSG00000087206 UIMC1 17 | ENSG00000087586 AURKA 18 | ENSG00000088038 CNOT3 19 | ENSG00000090097 PCBP4 20 | ENSG00000090447 TFAP4 21 | ENSG00000101412 E2F1 22 | ENSG00000102760 RGCC 23 | ENSG00000103479 RBL2 24 | ENSG00000104320 NBN 25 | ENSG00000104499 GML 26 | ENSG00000105393 BABAM1 27 | ENSG00000106144 CASP2 28 | ENSG00000108465 CDK5RAP3 29 | ENSG00000110092 CCND1 30 | ENSG00000111206 FOXM1 31 | ENSG00000111276 CDKN1B 32 | ENSG00000111596 CNOT2 33 | ENSG00000111653 ING4 34 | ENSG00000113300 CNOT6 35 | ENSG00000114126 TFDP2 36 | ENSG00000114670 NEK11 37 | ENSG00000115233 PSMD14 38 | ENSG00000116017 ARID3A 39 | ENSG00000116670 MAD2L2 40 | ENSG00000116717 GADD45A 41 | ENSG00000117614 SYF2 42 | ENSG00000117748 RPA2 43 | ENSG00000118495 PLAGL1 44 | ENSG00000122257 RBBP6 45 | ENSG00000123374 CDK2 46 | ENSG00000124762 CDKN1A 47 | ENSG00000124766 SOX4 48 | ENSG00000125107 CNOT1 49 | ENSG00000126457 PRMT1 50 | ENSG00000129473 BCL2L2 51 | ENSG00000132646 PCNA 52 | ENSG00000132819 RBM38 53 | ENSG00000134057 CCNB1 54 | ENSG00000135090 TAOK3 55 | ENSG00000135679 MDM2 56 | ENSG00000138767 CNOT6L 57 | ENSG00000139618 BRCA2 58 | ENSG00000140464 PML 59 | ENSG00000140525 FANCI 60 | ENSG00000141510 TP53 61 | ENSG00000141682 PMAIP1 62 | ENSG00000142453 CARM1 63 | ENSG00000143476 DTL 64 | ENSG00000143947 RPS27A 65 | ENSG00000144580 CNOT9 66 | ENSG00000145386 CCNA2 67 | ENSG00000145632 PLK2 68 | ENSG00000149115 TNKS1BP1 69 | ENSG00000149273 RPS3 70 | ENSG00000149311 ATM 71 | ENSG00000149554 CHEK1 72 | ENSG00000149948 HMGA2 73 | ENSG00000150991 UBC 74 | ENSG00000151849 CENPJ 75 | ENSG00000154767 XPC 76 | ENSG00000155508 CNOT8 77 | ENSG00000158019 BABAM2 78 | ENSG00000158402 CDC25C 79 | ENSG00000158435 CNOT11 80 | ENSG00000159388 BTG2 81 | ENSG00000161642 ZNF385A 82 | ENSG00000162607 USP1 83 | ENSG00000163322 ABRAXAS1 84 | ENSG00000163961 RNF168 85 | ENSG00000164808 SPIDR 86 | ENSG00000165891 E2F7 87 | ENSG00000169372 CRADD 88 | ENSG00000170312 CDK1 89 | ENSG00000170315 UBB 90 | ENSG00000170855 TRIAP1 91 | ENSG00000172613 RAD9A 92 | ENSG00000172977 KAT5 93 | ENSG00000173846 PLK3 94 | ENSG00000175054 ATR 95 | ENSG00000175793 SFN 96 | ENSG00000177374 HIC1 97 | ENSG00000177595 PIDD1 98 | ENSG00000177889 UBE2N 99 | ENSG00000181163 NPM1 100 | ENSG00000182973 CNOT10 101 | ENSG00000183765 CHEK2 102 | ENSG00000184481 FOXO4 103 | ENSG00000185499 MUC1 104 | ENSG00000185515 BRCC3 105 | ENSG00000197299 BLM 106 | ENSG00000198176 TFDP1 107 | ENSG00000198625 MDM4 108 | ENSG00000198791 CNOT7 109 | ENSG00000205250 E2F4 110 | ENSG00000221983 UBA52 111 | ENSG00000253729 PRKDC 112 | -------------------------------------------------------------------------------- /data-raw/Inflammation.txt: -------------------------------------------------------------------------------- 1 | EnsembleID GeneName 2 | ENSG00000125845 BMP2 3 | ENSG00000013725 CD6 4 | ENSG00000172216 CEBPB 5 | ENSG00000126353 CCR7 6 | ENSG00000184371 CSF1 7 | ENSG00000117525 F3 8 | ENSG00000131187 F12 9 | ENSG00000158869 FCER1G 10 | ENSG00000086062 B4GALT1 11 | ENSG00000126262 FFAR2 12 | ENSG00000163739 CXCL1 13 | ENSG00000081041 CXCL2 14 | ENSG00000163734 CXCL3 15 | ENSG00000090339 ICAM1 16 | ENSG00000115008 IL1A 17 | ENSG00000125538 IL1B 18 | ENSG00000136244 IL6 19 | ENSG00000169429 CXCL8 20 | ENSG00000113302 IL12B 21 | ENSG00000049249 TNFRSF9 22 | ENSG00000150782 IL18 23 | ENSG00000169245 CXCL10 24 | ENSG00000134070 IRAK2 25 | ENSG00000164344 KLKB1 26 | ENSG00000109320 NFKB1 27 | ENSG00000077150 NFKB2 28 | ENSG00000173391 OLR1 29 | ENSG00000099985 OSM 30 | ENSG00000106366 SERPINE1 31 | ENSG00000034152 MAP2K3 32 | ENSG00000073756 PTGS2 33 | ENSG00000163661 PTX3 34 | ENSG00000162924 REL 35 | ENSG00000173039 RELA 36 | ENSG00000104856 RELB 37 | ENSG00000143546 S100A8 38 | ENSG00000108691 CCL2 39 | ENSG00000277632 CCL3 40 | ENSG00000275302 CCL4 41 | ENSG00000271503 CCL5 42 | ENSG00000108688 CCL7 43 | ENSG00000108700 CCL8 44 | ENSG00000275385 CCL18 45 | ENSG00000115009 CCL20 46 | ENSG00000274736 CCL23 47 | ENSG00000124875 CXCL6 48 | ENSG00000169248 CXCL11 49 | ENSG00000137801 THBS1 50 | ENSG00000137462 TLR2 51 | ENSG00000232810 TNF 52 | ENSG00000117586 TNFSF4 53 | ENSG00000162692 VCAM1 54 | ENSG00000114251 WNT5A 55 | ENSG00000104312 RIPK2 56 | ENSG00000176170 SPHK1 57 | ENSG00000121797 CCRL2 58 | ENSG00000145623 OSMR 59 | ENSG00000172575 RASGRP1 60 | ENSG00000145901 TNIP1 61 | ENSG00000132510 KDM6B 62 | ENSG00000196664 TLR7 63 | ENSG00000110944 IL23A 64 | ENSG00000168884 TNIP2 65 | ENSG00000163874 ZC3H12A 66 | ENSG00000121807 CCR2 67 | ENSG00000102794 ACOD1 68 | ENSG00000101384 JAG1 69 | ENSG00000070961 ATP2B1 70 | ENSG00000121594 CD80 71 | ENSG00000026508 CD44 72 | ENSG00000108342 CSF3 73 | ENSG00000196352 CD55 74 | ENSG00000078401 EDN1 75 | ENSG00000124882 EREG 76 | ENSG00000151726 ACSL1 77 | ENSG00000196371 FUT4 78 | ENSG00000131979 GCH1 79 | ENSG00000147257 GPC3 80 | ENSG00000115594 IL1R1 81 | ENSG00000105855 ITGB8 82 | ENSG00000128342 LIF 83 | ENSG00000277443 MARCKS 84 | ENSG00000100906 NFKBIA 85 | ENSG00000131669 NINJ1 86 | ENSG00000197632 SERPINB2 87 | ENSG00000011422 PLAUR 88 | ENSG00000143333 RGS16 89 | ENSG00000124145 SDC4 90 | ENSG00000110436 SLC1A2 91 | ENSG00000075618 FSCN1 92 | ENSG00000126561 STAT5A 93 | ENSG00000185215 TNFAIP2 94 | ENSG00000159388 BTG2 95 | ENSG00000175592 FOSL1 96 | ENSG00000184602 SNN 97 | ENSG00000162407 PLPP3 98 | ENSG00000125657 TNFSF9 99 | ENSG00000137331 IER3 100 | ENSG00000137860 SLC28A2 101 | ENSG00000125733 TRIP10 102 | ENSG00000189067 LITAF 103 | ENSG00000105835 NAMPT 104 | ENSG00000054523 KIF1B 105 | ENSG00000184014 DENND5A 106 | ENSG00000160223 ICOSLG 107 | ENSG00000087074 PPP1R15A 108 | ENSG00000185022 MAFF 109 | ENSG00000064393 HIPK2 110 | ENSG00000123689 G0S2 111 | ENSG00000136048 DRAM1 112 | ENSG00000145777 TSLP 113 | ENSG00000137393 RNF144B 114 | -------------------------------------------------------------------------------- /data-raw/DNA_repair.txt: -------------------------------------------------------------------------------- 1 | EnsembleID GeneName 2 | ENSG00000002016 RAD52 3 | ENSG00000005075 POLR2J 4 | ENSG00000005156 LIG3 5 | ENSG00000009413 REV3L 6 | ENSG00000012048 BRCA1 7 | ENSG00000012061 ERCC1 8 | ENSG00000020426 MNAT1 9 | ENSG00000020922 MRE11 10 | ENSG00000035928 RFC1 11 | ENSG00000042088 TDP1 12 | ENSG00000048392 RRM2B 13 | ENSG00000049167 ERCC8 14 | ENSG00000049541 RFC2 15 | ENSG00000062822 POLD1 16 | ENSG00000065057 NTHL1 17 | ENSG00000067369 TP53BP1 18 | ENSG00000070501 POLB 19 | ENSG00000073050 XRCC1 20 | ENSG00000076924 XAB2 21 | ENSG00000077514 POLD3 22 | ENSG00000079246 XRCC5 23 | ENSG00000080345 RIF1 24 | ENSG00000083093 PALB2 25 | ENSG00000096717 SIRT1 26 | ENSG00000099817 POLR2E 27 | ENSG00000100142 POLR2F 28 | ENSG00000100479 POLE2 29 | ENSG00000100823 APEX1 30 | ENSG00000101751 POLI 31 | ENSG00000101868 POLA1 32 | ENSG00000102978 POLR2C 33 | ENSG00000103152 MPG 34 | ENSG00000104320 NBN 35 | ENSG00000104884 ERCC2 36 | ENSG00000105258 POLR2I 37 | ENSG00000105486 LIG1 38 | ENSG00000106399 RPA3 39 | ENSG00000106628 POLD2 40 | ENSG00000108384 RAD51C 41 | ENSG00000110768 GTF2H1 42 | ENSG00000111247 RAD51AP1 43 | ENSG00000111358 GTF2H3 44 | ENSG00000111445 RFC5 45 | ENSG00000112039 FANCE 46 | ENSG00000113522 RAD50 47 | ENSG00000114026 OGG1 48 | ENSG00000115392 FANCL 49 | ENSG00000116670 MAD2L2 50 | ENSG00000117748 RPA2 51 | ENSG00000119318 RAD23B 52 | ENSG00000122008 POLK 53 | ENSG00000123415 SMUG1 54 | ENSG00000124535 WRNIP1 55 | ENSG00000126215 XRCC3 56 | ENSG00000129071 MBD4 57 | ENSG00000130997 POLN 58 | ENSG00000132383 RPA1 59 | ENSG00000132646 PCNA 60 | ENSG00000132781 MUTYH 61 | ENSG00000133119 RFC3 62 | ENSG00000134058 CDK7 63 | ENSG00000134480 CCNH 64 | ENSG00000134574 DDB2 65 | ENSG00000135945 REV1 66 | ENSG00000136492 BRIP1 67 | ENSG00000136936 XPA 68 | ENSG00000139372 TDG 69 | ENSG00000139618 BRCA2 70 | ENSG00000141510 TP53 71 | ENSG00000143799 PARP1 72 | ENSG00000143947 RPS27A 73 | ENSG00000144231 POLR2D 74 | ENSG00000144554 FANCD2 75 | ENSG00000147400 CETN2 76 | ENSG00000147669 POLR2K 77 | ENSG00000149136 SSRP1 78 | ENSG00000149311 ATM 79 | ENSG00000152422 XRCC4 80 | ENSG00000152669 CCNO 81 | ENSG00000154767 XPC 82 | ENSG00000158169 FANCC 83 | ENSG00000163161 ERCC3 84 | ENSG00000163882 POLR2H 85 | ENSG00000163918 RFC4 86 | ENSG00000164104 HMGB2 87 | ENSG00000165392 WRN 88 | ENSG00000166169 POLL 89 | ENSG00000166199 ALKBH3 90 | ENSG00000167986 DDB1 91 | ENSG00000168002 POLR2G 92 | ENSG00000168496 FEN1 93 | ENSG00000169139 UBE2V2 94 | ENSG00000170430 MGMT 95 | ENSG00000170734 POLH 96 | ENSG00000174371 EXO1 97 | ENSG00000174405 LIG4 98 | ENSG00000175054 ATR 99 | ENSG00000175482 POLD4 100 | ENSG00000175595 ERCC4 101 | ENSG00000177084 POLE 102 | ENSG00000177302 TOP3A 103 | ENSG00000177889 UBE2N 104 | ENSG00000181544 FANCB 105 | ENSG00000182185 RAD51B 106 | ENSG00000183161 FANCF 107 | ENSG00000185379 RAD51D 108 | ENSG00000187741 FANCA 109 | ENSG00000187790 FANCM 110 | ENSG00000188486 H2AFX 111 | ENSG00000189046 ALKBH2 112 | ENSG00000189403 HMGB1 113 | ENSG00000196419 XRCC6 114 | ENSG00000196584 XRCC2 115 | ENSG00000197299 BLM 116 | ENSG00000213780 GTF2H4 117 | ENSG00000221829 FANCG 118 | ENSG00000221983 UBA52 119 | ENSG00000253729 PRKDC 120 | ENSG00000272047 GTF2H5 121 | -------------------------------------------------------------------------------- /data-raw/Cell_Cycle.txt: -------------------------------------------------------------------------------- 1 | EnsembleID GeneName 2 | ENSG00000011426 ANLN 3 | ENSG00000143401 ANP32E 4 | ENSG00000156802 ATAD2 5 | ENSG00000087586 AURKA 6 | ENSG00000136492 BRIP1 7 | ENSG00000118412 CASP8AP2 8 | ENSG00000094916 CBX5 9 | ENSG00000145386 CCNA2 10 | ENSG00000157456 CCNB2 11 | ENSG00000110092 CCND1 12 | ENSG00000105173 CCNE1 13 | ENSG00000175305 CCNE2 14 | ENSG00000158402 CDC25C 15 | ENSG00000093009 CDC45 16 | ENSG00000094804 CDC6 17 | ENSG00000184661 CDCA2 18 | ENSG00000111665 CDCA3 19 | ENSG00000134690 CDCA8 20 | ENSG00000115163 CENPA 21 | ENSG00000138778 CENPE 22 | ENSG00000159259 CHAF1B 23 | ENSG00000169607 CKAP2L 24 | ENSG00000175216 CKAP5 25 | ENSG00000173207 CKS1B 26 | ENSG00000123975 CKS2 27 | ENSG00000092853 CLSPN 28 | ENSG00000228716 DHFR 29 | ENSG00000126787 DLGAP5 30 | ENSG00000136982 DSCC1 31 | ENSG00000143476 DTL 32 | ENSG00000114346 ECT2 33 | ENSG00000174371 EXO1 34 | ENSG00000168496 FEN1 35 | ENSG00000139354 GAS2L3 36 | ENSG00000131153 GINS2 37 | ENSG00000075218 GTSE1 38 | ENSG00000119969 HELLS 39 | ENSG00000123485 HJURP 40 | ENSG00000072571 HMMR 41 | ENSG00000138160 KIF11 42 | ENSG00000137807 KIF23 43 | ENSG00000142945 KIF2C 44 | ENSG00000143815 LBR 45 | ENSG00000104738 MCM4 46 | ENSG00000100297 MCM5 47 | ENSG00000076003 MCM6 48 | ENSG00000148773 MKI67 49 | ENSG00000132780 NASP 50 | ENSG00000010292 NCAPD2 51 | ENSG00000080986 NDC80 52 | ENSG00000117650 NEK2 53 | ENSG00000143228 NUF2 54 | ENSG00000137804 NUSAP1 55 | ENSG00000132646 PCNA 56 | ENSG00000101868 POLA1 57 | ENSG00000077514 POLD3 58 | ENSG00000198056 PRIM1 59 | ENSG00000134222 PSRC1 60 | ENSG00000164611 PTTG1 61 | ENSG00000164754 RAD21 62 | ENSG00000111247 RAD51AP1 63 | ENSG00000100401 RANGAP1 64 | ENSG00000049541 RFC2 65 | ENSG00000163918 RFC4 66 | ENSG00000117748 RPA2 67 | ENSG00000167325 RRM1 68 | ENSG00000171848 RRM2 69 | ENSG00000163950 SLBP 70 | ENSG00000113810 SMC4 71 | ENSG00000013810 TACC3 72 | ENSG00000075131 TIPIN 73 | ENSG00000120802 TMPO 74 | ENSG00000131747 TOP2A 75 | ENSG00000112742 TTK 76 | ENSG00000188229 TUBB4B 77 | ENSG00000176890 TYMS 78 | ENSG00000012963 UBR7 79 | ENSG00000276043 UHRF1 80 | ENSG00000076248 UNG 81 | ENSG00000162607 USP1 82 | ENSG00000092470 WDR76 83 | ENSG00000014138 POLA2 84 | ENSG00000023909 GCLM 85 | ENSG00000029993 HMGB3 86 | ENSG00000035499 DEPDC1B 87 | ENSG00000068489 PRR11 88 | ENSG00000069275 NUCKS1 89 | ENSG00000075188 NUP37 90 | ENSG00000077152 UBE2T 91 | ENSG00000091651 ORC6 92 | ENSG00000100162 CENPM 93 | ENSG00000100749 VRK1 94 | ENSG00000101224 CDC25B 95 | ENSG00000101447 FAM83D 96 | ENSG00000105011 ASF1B 97 | ENSG00000109519 GRPEL1 98 | ENSG00000111445 RFC5 99 | ENSG00000112081 SRSF3 100 | ENSG00000121211 MND1 101 | ENSG00000122952 ZWINT 102 | ENSG00000131462 TUBG1 103 | ENSG00000132199 ENOSF1 104 | ENSG00000132341 RAN 105 | ENSG00000133119 RFC3 106 | ENSG00000133740 E2F5 107 | ENSG00000135334 AKIRIN2 108 | ENSG00000135451 TROAP 109 | ENSG00000136122 BORA 110 | ENSG00000140451 PIF1 111 | ENSG00000140525 FANCI 112 | ENSG00000145220 LYAR 113 | ENSG00000146670 CDCA5 114 | ENSG00000149636 DSN1 115 | ENSG00000162063 CCNF 116 | ENSG00000164045 CDC25A 117 | ENSG00000164105 SAP30 118 | ENSG00000164649 CDCA7L 119 | ENSG00000164941 INTS8 120 | ENSG00000166508 MCM7 121 | ENSG00000167670 CHAF1A 122 | ENSG00000168078 PBK 123 | ENSG00000168393 DTYMK 124 | ENSG00000169188 APEX2 125 | ENSG00000170759 KIF5B 126 | ENSG00000171241 SHCBP1 127 | ENSG00000174442 ZWILCH 128 | ENSG00000182481 KPNA2 129 | ENSG00000188486 H2AFX 130 | ENSG00000189060 H1F0 131 | ENSG00000196230 TUBB 132 | ENSG00000197061 HIST1H4C 133 | ENSG00000198901 PRC1 134 | ENSG00000203760 CENPW 135 | ENSG00000204568 MRPS18B 136 | ENSG00000204899 MZT1 137 | ENSG00000237649 KIFC1 138 | ENSG00000079616 KIF22 139 | -------------------------------------------------------------------------------- /data-raw/Metastasis.txt: -------------------------------------------------------------------------------- 1 | EnsembleID GeneName 2 | ENSG00000144476 ACKR3 3 | ENSG00000081051 AFP 4 | ENSG00000106541 AGR2 5 | ENSG00000142208 AKT1 6 | ENSG00000165092 ALDH1A1 7 | ENSG00000167772 ANGPTL4 8 | ENSG00000135046 ANXA1 9 | ENSG00000182718 ANXA2 10 | ENSG00000161798 AQP5 11 | ENSG00000162772 ATF3 12 | ENSG00000087586 AURKA 13 | ENSG00000167601 AXL 14 | ENSG00000166710 B2M 15 | ENSG00000168283 BMI1 16 | ENSG00000125845 BMP2 17 | ENSG00000157764 BRAF 18 | ENSG00000172270 BSG 19 | ENSG00000107159 CA9 20 | ENSG00000115355 CCDC88A 21 | ENSG00000110092 CCND1 22 | ENSG00000126353 CCR7 23 | ENSG00000272398 CD24 24 | ENSG00000120217 CD274 25 | ENSG00000026508 CD44 26 | ENSG00000163814 CDCP1 27 | ENSG00000079112 CDH17 28 | ENSG00000170558 CDH2 29 | ENSG00000079385 CEACAM1 30 | ENSG00000105388 CEACAM5 31 | ENSG00000213719 CLIC1 32 | ENSG00000132693 CRP 33 | ENSG00000118523 CTGF 34 | ENSG00000198561 CTNND1 35 | ENSG00000164733 CTSB 36 | ENSG00000143387 CTSK 37 | ENSG00000135047 CTSL 38 | ENSG00000085733 CTTN 39 | ENSG00000107562 CXCL12 40 | ENSG00000081041 CXCL2 41 | ENSG00000169429 CXCL8 42 | ENSG00000180871 CXCR2 43 | ENSG00000142871 CYR61 44 | ENSG00000162733 DDR2 45 | ENSG00000138798 EGF 46 | ENSG00000146648 EGFR 47 | ENSG00000120738 EGR1 48 | ENSG00000116016 EPAS1 49 | ENSG00000119888 EPCAM 50 | ENSG00000141736 ERBB2 51 | ENSG00000065361 ERBB3 52 | ENSG00000091831 ESR1 53 | ENSG00000140009 ESR2 54 | ENSG00000106462 EZH2 55 | ENSG00000092820 EZR 56 | ENSG00000164251 F2RL1 57 | ENSG00000077782 FGFR1 58 | ENSG00000132589 FLOT2 59 | ENSG00000102755 FLT1 60 | ENSG00000037280 FLT4 61 | ENSG00000115414 FN1 62 | ENSG00000176692 FOXC2 63 | ENSG00000111206 FOXM1 64 | ENSG00000111087 GLI1 65 | ENSG00000019991 HGF 66 | ENSG00000100644 HIF1A 67 | ENSG00000137309 HMGA1 68 | ENSG00000149948 HMGA2 69 | ENSG00000173083 HPSE 70 | ENSG00000125968 ID1 71 | ENSG00000131203 IDO1 72 | ENSG00000140443 IGF1R 73 | ENSG00000136231 IGF2BP3 74 | ENSG00000136244 IL6 75 | ENSG00000005884 ITGA3 76 | ENSG00000161638 ITGA5 77 | ENSG00000091409 ITGA6 78 | ENSG00000138448 ITGAV 79 | ENSG00000150093 ITGB1 80 | ENSG00000259207 ITGB3 81 | ENSG00000101384 JAG1 82 | ENSG00000128052 KDR 83 | ENSG00000133703 KRAS 84 | ENSG00000171345 KRT19 85 | ENSG00000198910 L1CAM 86 | ENSG00000058085 LAMC2 87 | ENSG00000002834 LASP1 88 | ENSG00000131981 LGALS3 89 | ENSG00000113083 LOX 90 | ENSG00000134013 LOXL2 91 | ENSG00000183742 MACC1 92 | ENSG00000076706 MCAM 93 | ENSG00000135679 MDM2 94 | ENSG00000105976 MET 95 | ENSG00000240972 MIF 96 | ENSG00000148773 MKI67 97 | ENSG00000196549 MME 98 | ENSG00000196611 MMP1 99 | ENSG00000099953 MMP11 100 | ENSG00000137745 MMP13 101 | ENSG00000157227 MMP14 102 | ENSG00000087245 MMP2 103 | ENSG00000149968 MMP3 104 | ENSG00000137673 MMP7 105 | ENSG00000100985 MMP9 106 | ENSG00000147065 MSN 107 | ENSG00000164078 MST1R 108 | ENSG00000182979 MTA1 109 | ENSG00000147649 MTDH 110 | ENSG00000185499 MUC1 111 | ENSG00000136997 MYC 112 | ENSG00000111859 NEDD9 113 | ENSG00000148400 NOTCH1 114 | ENSG00000148053 NTRK2 115 | ENSG00000132646 PCNA 116 | ENSG00000134853 PDGFRA 117 | ENSG00000162493 PDPN 118 | ENSG00000121879 PIK3CA 119 | ENSG00000067225 PKM 120 | ENSG00000122861 PLAU 121 | ENSG00000011422 PLAUR 122 | ENSG00000133110 POSTN 123 | ENSG00000163558 PRKCI 124 | ENSG00000007062 PROM1 125 | ENSG00000167653 PSCA 126 | ENSG00000073756 PTGS2 127 | ENSG00000087494 PTHLH 128 | ENSG00000169398 PTK2 129 | ENSG00000184489 PTP4A3 130 | ENSG00000164611 PTTG1 131 | ENSG00000089159 PXN 132 | ENSG00000132698 RAB25 133 | ENSG00000136238 RAC1 134 | ENSG00000173039 RELA 135 | ENSG00000155366 RHOC 136 | ENSG00000067900 ROCK1 137 | ENSG00000196154 S100A4 138 | ENSG00000182568 SATB1 139 | ENSG00000137575 SDCBP 140 | ENSG00000007908 SELE 141 | ENSG00000174175 SELP 142 | ENSG00000117394 SLC2A1 143 | ENSG00000124216 SNAI1 144 | ENSG00000019549 SNAI2 145 | ENSG00000173267 SNCG 146 | ENSG00000124766 SOX4 147 | ENSG00000113140 SPARC 148 | ENSG00000118785 SPP1 149 | ENSG00000197122 SRC 150 | ENSG00000168610 STAT3 151 | ENSG00000117632 STMN1 152 | ENSG00000164362 TERT 153 | ENSG00000120708 TGFBI 154 | ENSG00000198959 TGM2 155 | ENSG00000102265 TIMP1 156 | ENSG00000137648 TMPRSS4 157 | ENSG00000120659 TNFSF11 158 | ENSG00000025708 TYMP 159 | ENSG00000038427 VCAN 160 | ENSG00000112715 VEGFA 161 | ENSG00000150630 VEGFC 162 | ENSG00000165197 VEGFD 163 | ENSG00000026025 VIM 164 | ENSG00000132970 WASF3 165 | ENSG00000137693 YAP1 166 | ENSG00000148516 ZEB1 167 | ENSG00000169554 ZEB2 168 | -------------------------------------------------------------------------------- /data-raw/Stemness.txt: -------------------------------------------------------------------------------- 1 | EnsembleID GeneName 2 | ENSG00000183077 AFMID 3 | ENSG00000081051 AFP 4 | ENSG00000166825 ANPEP 5 | ENSG00000134982 APC 6 | ENSG00000240583 AQP1 7 | ENSG00000139352 ASCL1 8 | ENSG00000183734 ASCL2 9 | ENSG00000168646 AXIN2 10 | ENSG00000160862 AZGP1 11 | ENSG00000123636 BAZ2B 12 | ENSG00000168283 BMI1 13 | ENSG00000144857 BOC 14 | ENSG00000112308 C6orf62 15 | ENSG00000104267 CA2 16 | ENSG00000162545 CAMK2N1 17 | ENSG00000271503 CCL5 18 | ENSG00000118971 CCND2 19 | ENSG00000091972 CD200 20 | ENSG00000272398 CD24 21 | ENSG00000105383 CD33 22 | ENSG00000004468 CD38 23 | ENSG00000026508 CD44 24 | ENSG00000144354 CDCA7 25 | ENSG00000105810 CDK6 26 | ENSG00000245848 CEBPA 27 | ENSG00000001626 CFTR 28 | ENSG00000171316 CHD7 29 | ENSG00000110880 CORO1C 30 | ENSG00000081041 CXCL2 31 | ENSG00000109851 DBX1 32 | ENSG00000185610 DBX2 33 | ENSG00000119772 DNMT3A 34 | ENSG00000197635 DPP4 35 | ENSG00000164330 EBF1 36 | ENSG00000156508 EEF1A1 37 | ENSG00000146648 EGFR 38 | ENSG00000063046 EIF4B 39 | ENSG00000135638 EMX1 40 | ENSG00000170370 EMX2 41 | ENSG00000106991 ENG 42 | ENSG00000133216 EPHB2 43 | ENSG00000157557 ETS2 44 | ENSG00000006468 ETV1 45 | ENSG00000126860 EVI2A 46 | ENSG00000106462 EZH2 47 | ENSG00000164434 FABP7 48 | ENSG00000162981 FAM84A 49 | ENSG00000162458 FBLIM1 50 | ENSG00000161243 FBXO27 51 | ENSG00000101311 FERMT1 52 | ENSG00000125798 FOXA2 53 | ENSG00000170608 FOXA3 54 | ENSG00000176165 FOXG1 55 | ENSG00000102145 GATA1 56 | ENSG00000179348 GATA2 57 | ENSG00000107485 GATA3 58 | ENSG00000136574 GATA4 59 | ENSG00000131095 GFAP 60 | ENSG00000162676 GFI1 61 | ENSG00000111087 GLI1 62 | ENSG00000147257 GPC3 63 | ENSG00000150625 GPM6A 64 | ENSG00000121957 GPSM2 65 | ENSG00000176153 GPX2 66 | ENSG00000130600 H19 67 | ENSG00000132475 H3F3B 68 | ENSG00000074696 HACD3 69 | ENSG00000145681 HAPLN1 70 | ENSG00000221932 HEPN1 71 | ENSG00000114315 HES1 72 | ENSG00000169045 HNRNPH1 73 | ENSG00000104824 HNRNPL 74 | ENSG00000171476 HOPX 75 | ENSG00000090339 ICAM1 76 | ENSG00000138413 IDH1 77 | ENSG00000185811 IKZF1 78 | ENSG00000177508 IRX3 79 | ENSG00000169896 ITGAM 80 | ENSG00000128052 KDR 81 | ENSG00000157404 KIT 82 | ENSG00000129451 KLK10 83 | ENSG00000186847 KRT14 84 | ENSG00000150457 LATS2 85 | ENSG00000139292 LGR5 86 | ENSG00000205791 LOH12CR2 87 | ENSG00000144749 LRIG1 88 | ENSG00000167656 LY6D 89 | ENSG00000090382 LYZ 90 | ENSG00000251562 MALAT1 91 | ENSG00000172197 MBOAT1 92 | ENSG00000166823 MESP1 93 | ENSG00000188095 MESP2 94 | ENSG00000165819 METTL3 95 | ENSG00000078403 MLLT10 96 | ENSG00000196549 MME 97 | ENSG00000118513 MYB 98 | ENSG00000136997 MYC 99 | ENSG00000111704 NANOG 100 | ENSG00000149294 NCAM1 101 | ENSG00000197168 NEK5 102 | ENSG00000184613 NELL2 103 | ENSG00000123405 NFE2 104 | ENSG00000162599 NFIA 105 | ENSG00000147862 NFIB 106 | ENSG00000183072 NKX2-5 107 | ENSG00000156574 NODAL 108 | ENSG00000135318 NT5E 109 | ENSG00000102837 OLFM4 110 | ENSG00000079482 OPHN1 111 | ENSG00000091651 ORC6 112 | ENSG00000070756 PABPC1 113 | ENSG00000007372 PAX6 114 | ENSG00000204531 POU5F1 115 | ENSG00000007062 PROM1 116 | ENSG00000112655 PTK7 117 | ENSG00000187514 PTMA 118 | ENSG00000081237 PTPRC 119 | ENSG00000144724 PTPRG 120 | ENSG00000151490 PTPRO 121 | ENSG00000105426 PTPRS 122 | ENSG00000106278 PTPRZ1 123 | ENSG00000011478 QPCTL 124 | ENSG00000188060 RAB42 125 | ENSG00000197291 RAMP2-AS1 126 | ENSG00000004534 RBM6 127 | ENSG00000174136 RGMB 128 | ENSG00000108375 RNF43 129 | ENSG00000159216 RUNX1 130 | ENSG00000119335 SET 131 | ENSG00000064651 SLC12A2 132 | ENSG00000175387 SMAD2 133 | ENSG00000112562 SMOC2 134 | ENSG00000182968 SOX1 135 | ENSG00000176887 SOX11 136 | ENSG00000164736 SOX17 137 | ENSG00000181449 SOX2 138 | ENSG00000134595 SOX3 139 | ENSG00000124766 SOX4 140 | ENSG00000125398 SOX9 141 | ENSG00000136206 SPDYE1 142 | ENSG00000170092 SPDYE5 143 | ENSG00000153820 SPHKAP 144 | ENSG00000171943 SRGAP2C 145 | ENSG00000117632 STMN1 146 | ENSG00000104435 STMN2 147 | ENSG00000162367 TAL1 148 | ENSG00000203705 TATDN3 149 | ENSG00000140262 TCF12 150 | ENSG00000196628 TCF4 151 | ENSG00000241186 TDGF1 152 | ENSG00000114126 TFDP2 153 | ENSG00000072274 TFRC 154 | ENSG00000154096 THY1 155 | ENSG00000185361 TNFAIP8L1 156 | ENSG00000103460 TOX3 157 | ENSG00000164548 TRA2A 158 | ENSG00000000003 TSPAN6 159 | ENSG00000174607 UGT8 160 | ENSG00000112715 VEGFA 161 | ENSG00000160062 ZBTB8A 162 | ENSG00000188227 ZNF793 163 | ENSG00000118777 ABCG2 164 | ENSG00000165092 ALDH1A1 165 | ENSG00000184254 ALDH1A3 166 | ENSG00000187957 DNER 167 | ENSG00000105976 MET 168 | -------------------------------------------------------------------------------- /data-raw/Differentiation.txt: -------------------------------------------------------------------------------- 1 | EnsembleID GeneName 2 | ENSG00000097007 ABL1 3 | ENSG00000115170 ACVR1 4 | ENSG00000196839 ADA 5 | ENSG00000135744 AGT 6 | ENSG00000142208 AKT1 7 | ENSG00000135046 ANXA1 8 | ENSG00000172238 ATOH1 9 | ENSG00000157087 ATP2B2 10 | ENSG00000165240 ATP7A 11 | ENSG00000167601 AXL 12 | ENSG00000171791 BCL2 13 | ENSG00000069399 BCL3 14 | ENSG00000057657 PRDM1 15 | ENSG00000125845 BMP2 16 | ENSG00000153162 BMP6 17 | ENSG00000157764 BRAF 18 | ENSG00000064012 CASP8 19 | ENSG00000182533 CAV3 20 | ENSG00000124813 RUNX2 21 | ENSG00000159216 RUNX1 22 | ENSG00000134057 CCNB1 23 | ENSG00000114013 CD86 24 | ENSG00000170312 CDK1 25 | ENSG00000070831 CDC42 26 | ENSG00000170558 CDH2 27 | ENSG00000245848 CEBPA 28 | ENSG00000172216 CEBPB 29 | ENSG00000118260 CREB1 30 | ENSG00000112062 MAPK14 31 | ENSG00000184371 CSF1 32 | ENSG00000182578 CSF1R 33 | ENSG00000164400 CSF2 34 | ENSG00000184845 DRD1 35 | ENSG00000124205 EDN3 36 | ENSG00000136160 EDNRB 37 | ENSG00000142627 EPHA2 38 | ENSG00000135638 EMX1 39 | ENSG00000100393 EP300 40 | ENSG00000178568 ERBB4 41 | ENSG00000104884 ERCC2 42 | ENSG00000107831 FGF8 43 | ENSG00000077782 FGFR1 44 | ENSG00000066468 FGFR2 45 | ENSG00000176692 FOXC2 46 | ENSG00000090554 FLT3LG 47 | ENSG00000198793 MTOR 48 | ENSG00000102145 GATA1 49 | ENSG00000136574 GATA4 50 | ENSG00000141448 GATA6 51 | ENSG00000168621 GDNF 52 | ENSG00000087460 GNAS 53 | ENSG00000196591 HDAC2 54 | ENSG00000123338 NCKAP1L 55 | ENSG00000157168 NRG1 56 | ENSG00000152804 HHEX 57 | ENSG00000100644 HIF1A 58 | ENSG00000189403 HMGB1 59 | ENSG00000129514 FOXA1 60 | ENSG00000106004 HOXA5 61 | ENSG00000017427 IGF1 62 | ENSG00000109471 IL2 63 | ENSG00000077238 IL4R 64 | ENSG00000095752 IL11 65 | ENSG00000113302 IL12B 66 | ENSG00000164136 IL15 67 | ENSG00000166333 ILK 68 | ENSG00000173404 INSM1 69 | ENSG00000137265 IRF4 70 | ENSG00000184916 JAG2 71 | ENSG00000177606 JUN 72 | ENSG00000171223 JUNB 73 | ENSG00000157404 KIT 74 | ENSG00000172037 LAMB2 75 | ENSG00000174697 LEP 76 | ENSG00000100097 LGALS1 77 | ENSG00000168961 LGALS9 78 | ENSG00000273706 LHX1 79 | ENSG00000128342 LIF 80 | ENSG00000160789 LMNA 81 | ENSG00000254087 LYN 82 | ENSG00000141646 SMAD4 83 | ENSG00000068305 MEF2A 84 | ENSG00000081189 MEF2C 85 | ENSG00000049130 KITLG 86 | ENSG00000157227 MMP14 87 | ENSG00000111049 MYF5 88 | ENSG00000111046 MYF6 89 | ENSG00000100345 MYH9 90 | ENSG00000137474 MYO7A 91 | ENSG00000129152 MYOD1 92 | ENSG00000122180 MYOG 93 | ENSG00000101096 NFATC2 94 | ENSG00000147862 NFIB 95 | ENSG00000198400 NTRK1 96 | ENSG00000148053 NTRK2 97 | ENSG00000007168 PAFAH1B1 98 | ENSG00000075891 PAX2 99 | ENSG00000163737 PF4 100 | ENSG00000164093 PITX2 101 | ENSG00000102024 PLS3 102 | ENSG00000091010 POU4F3 103 | ENSG00000132170 PPARG 104 | ENSG00000102882 MAPK3 105 | ENSG00000169032 MAP2K1 106 | ENSG00000117707 PROX1 107 | ENSG00000080815 PSEN1 108 | ENSG00000171522 PTGER4 109 | ENSG00000105894 PTN 110 | ENSG00000179295 PTPN11 111 | ENSG00000106278 PTPRZ1 112 | ENSG00000136238 RAC1 113 | ENSG00000166349 RAG1 114 | ENSG00000139687 RB1 115 | ENSG00000104856 RELB 116 | ENSG00000186350 RXRA 117 | ENSG00000172724 CCL19 118 | ENSG00000168779 SHOX2 119 | ENSG00000124216 SNAI1 120 | ENSG00000142168 SOD1 121 | ENSG00000124766 SOX4 122 | ENSG00000100146 SOX10 123 | ENSG00000176887 SOX11 124 | ENSG00000172845 SP3 125 | ENSG00000066336 SPI1 126 | ENSG00000112658 SRF 127 | ENSG00000173757 STAT5B 128 | ENSG00000118046 STK11 129 | ENSG00000165025 SYK 130 | ENSG00000162367 TAL1 131 | ENSG00000092969 TGFB2 132 | ENSG00000163513 TGFBR2 133 | ENSG00000126351 THRA 134 | ENSG00000136352 NKX2-1 135 | ENSG00000175104 TRAF6 136 | ENSG00000165699 TSC1 137 | ENSG00000112715 VEGFA 138 | ENSG00000154764 WNT7A 139 | ENSG00000061492 WNT8A 140 | ENSG00000085741 WNT11 141 | ENSG00000184937 WT1 142 | ENSG00000115085 ZAP70 143 | ENSG00000163508 EOMES 144 | ENSG00000138623 SEMA7A 145 | ENSG00000120659 TNFSF11 146 | ENSG00000073282 TP63 147 | ENSG00000125657 TNFSF9 148 | ENSG00000168040 FADD 149 | ENSG00000099250 NRP1 150 | ENSG00000007062 PROM1 151 | ENSG00000109062 SLC9A3R1 152 | ENSG00000057663 ATG5 153 | ENSG00000033867 SLC4A7 154 | ENSG00000161021 MAML1 155 | ENSG00000169554 ZEB2 156 | ENSG00000134198 TSPAN2 157 | ENSG00000138802 SEC24B 158 | ENSG00000156127 BATF 159 | ENSG00000126804 ZBTB1 160 | ENSG00000004487 KDM1A 161 | ENSG00000132510 KDM6B 162 | ENSG00000135547 HEY2 163 | ENSG00000180900 SCRIB 164 | ENSG00000149256 TENM4 165 | ENSG00000104164 BLOC1S6 166 | ENSG00000114861 FOXP1 167 | ENSG00000163217 BMP10 168 | ENSG00000162891 IL20 169 | ENSG00000064309 CDON 170 | ENSG00000143951 WDPCP 171 | ENSG00000138795 LEF1 172 | ENSG00000110944 IL23A 173 | ENSG00000112782 CLIC5 174 | ENSG00000128917 DLL4 175 | ENSG00000166292 TMEM100 176 | ENSG00000055732 MCOLN3 177 | ENSG00000110693 SOX6 178 | ENSG00000166823 MESP1 179 | ENSG00000003137 CYP26B1 180 | ENSG00000177706 FAM20C 181 | ENSG00000125850 OVOL2 182 | ENSG00000151748 SAV1 183 | ENSG00000196189 SEMA4A 184 | ENSG00000127152 BCL11B 185 | ENSG00000101882 NKAP 186 | ENSG00000186862 PDZD7 187 | ENSG00000111186 WNT5B 188 | ENSG00000164935 DCSTAMP 189 | ENSG00000158555 GDPD5 190 | ENSG00000184564 SLITRK6 191 | ENSG00000140795 MYLK3 192 | ENSG00000165091 TMC1 193 | ENSG00000149635 OCSTAMP 194 | ENSG00000164509 IL31RA 195 | ENSG00000162594 IL23R 196 | ENSG00000143869 GDF7 197 | ENSG00000119919 NKX2-3 198 | ENSG00000242866 STRC 199 | ENSG00000004848 ARX 200 | ENSG00000180613 GSX2 201 | ENSG00000197753 LHFPL5 202 | ENSG00000101974 ATP11C 203 | --------------------------------------------------------------------------------