├── LICENSE ├── MMD ├── README.md ├── s1_mapped1.txt ├── s1_mapped2.txt ├── s1_type1.txt ├── s1_type2.txt ├── s2_mapped1.txt ├── s2_mapped2.txt ├── s2_type1.txt ├── s2_type2.txt ├── s3_mapped1.txt ├── s3_mapped2.txt ├── s3_type1.txt └── s3_type2.txt ├── PBMC ├── ATAC_celltype.txt ├── ATAC_scaledata.txt ├── ATAC_type.txt ├── README.md ├── RNA_celltype.txt ├── RNA_scaledata.txt ├── RNA_type.txt └── celltype-map.txt ├── Pamona.py ├── README.md ├── SNARE ├── README.md ├── pamona_fracs_atac_rna.txt ├── pamona_fracs_atac_rna_314.txt ├── pamona_fracs_atac_rna_628.txt ├── pamona_fracs_atac_rna_924.txt ├── pamona_fracs_rna_atac.txt ├── pamona_fracs_rna_atac_314.txt ├── pamona_fracs_rna_atac_628.txt ├── pamona_fracs_rna_atac_924.txt ├── proecess.py ├── scatac_feat.npy ├── scot_fracs_atac_rna.txt ├── scot_fracs_rna_atac.txt └── scrna_feat.npy ├── Simulation1 ├── Simulation1_partial1.txt ├── Simulation1_partial2.txt ├── s1_mapped1.txt ├── s1_mapped2.txt ├── s1_type1.txt ├── s1_type2.txt ├── type1_partial.txt └── type2_partial.txt ├── Simulation2 ├── domain1.txt ├── domain2.txt ├── type1.txt └── type2.txt ├── __pycache__ ├── eval.cpython-36.pyc ├── project.cpython-36.pyc ├── utils.cpython-36.pyc └── visualization.cpython-36.pyc ├── eval.py ├── example ├── PBMC.ipynb ├── Simulation1.ipynb ├── Simulation2.ipynb ├── scGEM.ipynb └── scNMT-three-datasets.ipynb ├── scGEM ├── Cheow_expression.csv ├── Cheow_methylation.csv ├── GeneName_experssion.txt ├── GeneName_methylation.txt ├── README.md ├── expression.txt ├── expression_partial.txt ├── expression_type.txt ├── expression_type_partial.txt ├── met_label.txt ├── methlation_type.txt ├── methylation.txt ├── methylation_partial.txt ├── methylation_type_partial.txt └── rna_label.txt ├── scNMT ├── README.md ├── acc_30.txt ├── acc_30_removeE45.txt ├── acc_stage.txt ├── acc_stage_removeE45.txt ├── match_rna.txt ├── met_30.txt ├── met_stage.txt ├── rna_30.txt └── rna_stage.txt ├── utils.py └── visualization.py /LICENSE: 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