├── .coveragerc ├── .github └── workflows │ └── flake8.yml ├── .gitignore ├── .travis.yml ├── ChangeLog.md ├── LICENSE ├── MANIFEST.in ├── Makefile ├── README.md ├── ci ├── conda_requirements.txt └── pip_requirements.txt ├── data └── tiny-test │ ├── alt-map.txt │ ├── map.txt │ ├── otu_table.biom │ ├── otu_table.txt │ └── taxonomy.qza ├── ipynb ├── Sourcetracking using a Gibbs Sampler.ipynb ├── Sourcetracking-using-QIIME2.ipynb ├── Visualizing results.ipynb └── qiime2-results │ ├── screen-shots │ ├── all-bar-loo.png │ ├── all-bar-noloo.png │ ├── s0-contribution.png │ ├── sewage-contribution.png │ └── tabulate.png │ ├── sourcetracker-loo │ ├── drainwater-sink-assignments-barplot.qzv │ ├── mixing_proportion_stds.qza │ ├── mixing_proportions.qza │ ├── per_sink_assignments.qza │ ├── per_sink_assignments_map.qza │ ├── proportions-barplot.qzv │ ├── seawater-sink-assignments-barplot.qzv │ └── sewage-sink-assignments-barplot.qzv │ └── sourcetracker-noloo │ ├── mixing_proportion_stds.qza │ ├── mixing_proportions.qza │ ├── per_sink_assignments.qza │ ├── per_sink_assignments_map.qza │ ├── per_sink_assignments_map.qzv │ ├── proportions-barplot.qzv │ └── s0-sink-assignments-barplot.qzv ├── setup.py └── sourcetracker ├── __init__.py ├── _cli ├── __init__.py ├── cli.py ├── gibbs.py └── tests │ ├── data │ ├── exp_example1 │ │ ├── mixing_proportions.txt │ │ └── mixing_proportions_stds.txt │ ├── exp_example2 │ │ ├── mixing_proportions.txt │ │ └── mixing_proportions_stds.txt │ ├── exp_example3 │ │ ├── mixing_proportions.txt │ │ └── mixing_proportions_stds.txt │ ├── exp_example4 │ │ ├── mixing_proportions.txt │ │ └── mixing_proportions_stds.txt │ └── exp_example5 │ │ ├── mixing_proportions.txt │ │ └── mixing_proportions_stds.txt │ └── test_standalone_gibbs.py ├── _compare.py ├── _gibbs.py ├── _gibbs_defaults.py ├── _plot.py ├── _q2 ├── __init__.py ├── _format.py ├── _transformer.py ├── _type.py ├── _visualizer.py ├── citations.bib ├── plugin_setup.py └── tests │ ├── data │ ├── 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