├── .editorconfig ├── .github └── workflows │ ├── README.md │ ├── pr-close-signal.yaml │ ├── pr-comment.yaml │ ├── pr-post-remove-branch.yaml │ ├── pr-preflight.yaml │ ├── pr-receive.yaml │ ├── sandpaper-main.yaml │ ├── sandpaper-version.txt │ ├── update-cache.yaml │ └── update-workflows.yaml ├── .gitignore ├── AUTHORS ├── CITATION ├── CODE_OF_CONDUCT.md ├── CONTRIBUTING.md ├── LICENSE.md ├── README.md ├── config.yaml ├── episodes ├── 01-intro-to-rnaseq.Rmd ├── 02-setup.Rmd ├── 03-import-annotate.Rmd ├── 04-exploratory-qc.Rmd ├── 05-differential-expression.Rmd ├── 06-extra-design.Rmd ├── 07-gene-set-analysis.Rmd ├── 08-next-steps.Rmd ├── data │ ├── GSE96870_coldata_all.csv │ ├── GSE96870_coldata_cerebellum.csv │ ├── GSE96870_counts_cerebellum.csv │ └── GSE96870_rowranges.tsv ├── download_data.R └── fig │ ├── 02_setup │ ├── data_folder.png │ ├── folders_working_dir.png │ ├── rstudio_console.png │ └── rstudio_project.png │ ├── alternative_splicing_sub.png │ ├── 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