├── .github ├── CODE_OF_CONDUCT.rst ├── ISSUE_TEMPLATE │ ├── bug_report.yml │ ├── config.yml │ ├── documentation.yml │ └── feature_request.yml ├── PULL_REQUEST_TEMPLATE.md └── workflows │ ├── add-to-dashboard.yml │ ├── auto-publish.yml │ ├── testing.yml │ └── update-caches.yml ├── .gitignore ├── .pre-commit-config.yaml ├── .readthedocs.yaml ├── CITATION.cff ├── LICENSE ├── MANIFEST.in ├── README.md ├── base_gin_test_config.json ├── codecov.yml ├── docs ├── __init__.py ├── _static │ └── css │ │ └── custom.css ├── api │ ├── interfaces.behavior.rst │ ├── interfaces.ecephys.rst │ ├── interfaces.ophys.rst │ ├── interfaces.rst │ ├── nwbconverter.rst │ ├── tools.roiextractors.rst │ ├── tools.rst │ ├── tools.spikeinterface.rst │ ├── tools.yaml_to_nwb_conversion.rst │ └── utils.rst ├── conf.py ├── conversion_example_gallery.rst ├── conversion_examples_gallery │ ├── __init__.py │ ├── conftest.py │ ├── imaging │ │ ├── hdf5imaging.rst │ │ ├── scanbox.rst │ │ ├── scanimage.rst │ │ └── tiff.rst │ ├── recording │ │ ├── axona.rst │ │ ├── blackrock.rst │ │ ├── intan.rst │ │ ├── neuralynx.rst │ │ ├── neuroscope.rst │ │ ├── openephys.rst │ │ ├── spikegadgets.rst │ │ └── spikeglx.rst │ └── sorting │ │ ├── cellexplorer.rst │ │ ├── kilosort.rst │ │ ├── neuroscope.rst │ │ └── phy.rst ├── developer_guide.rst ├── developer_guide │ ├── build_data_interface.rst │ └── project_structure.rst ├── img │ ├── nwb_conversion_tools_uml.svg │ └── nwb_overview.png ├── index.rst ├── tutorials.rst └── user_guide.rst ├── documentation ├── conversion_guide.py ├── conversion_tools_structure.md ├── converter-gui-operations.png └── converting_data_to_nwb.md ├── images ├── gif_gui_demonstration.gif └── image_diagram.png ├── make_env.yml ├── make_env_testing.yml ├── pyproject.toml ├── requirements-full.txt ├── requirements-minimal.txt ├── requirements-rtd.txt ├── requirements-testing.txt ├── setup.py ├── src └── nwb_conversion_tools │ ├── __init__.py │ ├── basedatainterface.py │ ├── datainterfaces │ ├── __init__.py │ ├── behavior │ │ ├── __init__.py │ │ └── movie │ │ │ ├── __init__.py │ │ │ ├── movie_utils.py │ │ │ └── moviedatainterface.py │ ├── ecephys │ │ ├── __init__.py │ │ ├── axona │ │ │ ├── __init__.py │ │ │ └── axonadatainterface.py │ │ ├── baselfpextractorinterface.py │ │ ├── baserecordingextractorinterface.py │ │ ├── basesortingextractorinterface.py │ │ ├── blackrock │ │ │ ├── __init__.py │ │ │ ├── blackrockdatainterface.py │ │ │ └── header_tools.py │ │ ├── ced │ │ │ ├── __init__.py │ │ │ └── ceddatainterface.py │ │ ├── cellexplorer │ │ │ ├── __init__.py │ │ │ └── cellexplorerdatainterface.py │ │ ├── intan │ │ │ ├── __init__.py │ │ │ └── intandatainterface.py │ │ ├── kilosort │ │ │ ├── __init__.py │ │ │ └── kilosortdatainterface.py │ │ ├── neuralynx │ │ │ ├── __init__.py │ │ │ └── neuralynxdatainterface.py │ │ ├── neuroscope │ │ │ ├── __init__.py │ │ │ ├── neuroscope_utils.py │ │ │ └── neuroscopedatainterface.py │ │ ├── openephys │ │ │ ├── __init__.py │ │ │ └── openephysdatainterface.py │ │ ├── phy │ │ │ ├── __init__.py │ │ │ └── phydatainterface.py │ │ ├── spikegadgets │ │ │ ├── __init__.py │ │ │ └── spikegadgetsdatainterface.py │ │ ├── spikeglx │ │ │ ├── __init__.py │ │ │ ├── spikeglx_utils.py │ │ │ └── spikeglxdatainterface.py │ │ ├── spikeinterface │ │ │ ├── __init__.py │ │ │ └── sipickledatainterfaces.py │ │ └── tutorial │ │ │ ├── __init__.py │ │ │ ├── recordingtutorialdatainterface.py │ │ │ └── sortingtutorialdatainterface.py │ ├── icephys │ │ ├── __init__.py │ │ ├── abf │ │ │ ├── __init__.py │ │ │ └── abfdatainterface.py │ │ └── baseicephysinterface.py │ └── ophys │ │ ├── __init__.py │ │ ├── baseimagingextractorinterface.py │ │ ├── basesegmentationextractorinterface.py │ │ ├── caiman │ │ ├── __init__.py │ │ └── caimandatainterface.py │ │ ├── cnmfe │ │ ├── __init__.py │ │ └── cnmfedatainterface.py │ │ ├── extract │ │ ├── __init__.py │ │ └── extractdatainterface.py │ │ ├── hdf5 │ │ ├── __init__.py │ │ └── hdf5datainterface.py │ │ ├── sbx │ │ ├── __init__.py │ │ └── sbxdatainterface.py │ │ ├── scanimage │ │ ├── __init__.py │ │ └── scanimageimaginginterface.py │ │ ├── sima │ │ ├── __init__.py │ │ └── simadatainterface.py │ │ ├── suite2p │ │ ├── __init__.py │ │ └── suite2pdatainterface.py │ │ └── tiff │ │ ├── __init__.py │ │ └── tiffdatainterface.py │ ├── nwbconverter.py │ ├── schemas │ ├── metadata_schema.json │ ├── source_example.json │ ├── source_schema.json │ └── yaml_conversion_specification_schema.json │ ├── tools │ ├── __init__.py │ ├── data_transfers.py │ ├── figshare.py │ ├── hdmf.py │ ├── neo │ │ ├── __init__.py │ │ └── neo.py │ ├── nwb_helpers.py │ ├── roiextractors │ │ ├── __init__.py │ │ └── roiextractors.py │ ├── spikeinterface │ │ ├── __init__.py │ │ ├── spikeinterface.py │ │ └── spikeinterfacerecordingdatachunkiterator.py │ └── yaml_conversion_specification │ │ ├── __init__.py │ │ └── yaml_conversion_specification.py │ └── utils │ ├── __init__.py │ ├── checks.py │ ├── dict.py │ ├── globbing.py │ ├── json_schema.py │ └── types.py ├── tests ├── __init__.py ├── test_internals │ ├── __init__.py │ ├── metadata_tests.json │ ├── metadata_tests.yaml │ ├── test_converter.py │ ├── test_globbing_utils.py │ ├── test_hdmf.py │ ├── test_interfaces.py │ ├── test_json_schema_utils.py │ ├── test_movie_interface.py │ ├── test_movie_utils.py │ ├── test_roi_extractors_module.py │ ├── test_schemas.py │ ├── test_si.py │ ├── test_tools.py │ ├── test_tools │ │ └── test_hdmf.py │ └── test_utils.py └── test_on_data │ ├── __init__.py │ ├── conversion_specifications │ ├── GIN_conversion_specification.yml │ ├── GIN_conversion_specification_missing_nwbfile_names.yml │ └── GIN_conversion_specification_no_nwbfile_name_or_other_metadata.yml │ ├── setup_paths.py │ ├── test_gin_behavior.py │ ├── test_gin_ecephys.py │ ├── test_gin_icephys.py │ ├── test_gin_ophys.py │ ├── test_metadata │ ├── __init__.py │ ├── test_neuralynx_metadata.py │ ├── test_neuroscope_metadata.py │ ├── test_scanimage_metadata.py │ └── 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