├── .gitattributes ├── .gitignore ├── README.md ├── Snakefile ├── ccb_snakemake_fa23_slidesv3.pdf ├── config ├── ._samples.tsv ├── ._samples.txt ├── all_samples.tsv ├── config.yml └── subset.tsv ├── envs ├── call_variants.yml ├── get_data.yml ├── mapping.yml ├── plotting.yml ├── preprocessing.yml └── snakemake_fa23.yml ├── rules ├── call_variants.smk ├── common_utils.smk ├── get_data.smk ├── mapping.smk ├── plotting.smk └── preprocessing.smk └── scripts └── vcf2heatmap.R /.gitattributes: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ccbskillssem/snakemake_fa23/HEAD/.gitattributes -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ccbskillssem/snakemake_fa23/HEAD/.gitignore -------------------------------------------------------------------------------- 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