├── .editorconfig ├── .github └── workflows │ ├── pages.yml │ └── python-package.yml ├── .gitignore ├── CHANGELOG.rst ├── LICENSE ├── Makefile ├── README.rst ├── docs ├── Makefile ├── _build │ ├── .buildinfo │ ├── _config.yml │ ├── _images │ │ ├── badge-coverage.svg │ │ ├── badge-py310.svg │ │ ├── badge-py311.svg │ │ ├── badge-py312.svg │ │ ├── badge-py39.svg │ │ ├── badge-pypy39.svg │ │ ├── coverage.svg │ │ ├── graph_time_complexity.png │ │ └── graph_time_complexity_pypy38.png │ ├── _sources │ │ ├── builder │ │ │ ├── builder.rst.txt │ │ │ ├── mccreight.rst.txt │ │ │ ├── naive.rst.txt │ │ │ └── ukkonen.rst.txt │ │ ├── builders.rst.txt │ │ ├── examples.rst.txt │ │ ├── index.rst.txt │ │ ├── lca.rst.txt │ │ ├── node.rst.txt │ │ ├── performance.rst.txt │ │ ├── references.rst.txt │ │ ├── tree.rst.txt │ │ └── util.rst.txt │ ├── _static │ │ ├── _sphinx_javascript_frameworks_compat.js │ │ ├── basic.css │ │ ├── css │ │ │ ├── badge_only.css │ │ │ ├── fonts │ │ │ │ ├── Roboto-Slab-Bold.woff │ │ │ │ ├── Roboto-Slab-Bold.woff2 │ │ │ │ ├── Roboto-Slab-Regular.woff │ │ │ │ ├── Roboto-Slab-Regular.woff2 │ │ │ │ ├── fontawesome-webfont.eot │ │ │ │ ├── fontawesome-webfont.svg │ │ │ │ ├── fontawesome-webfont.ttf │ │ │ │ ├── fontawesome-webfont.woff │ │ │ │ ├── fontawesome-webfont.woff2 │ │ │ │ ├── lato-bold-italic.woff │ │ │ │ ├── lato-bold-italic.woff2 │ │ │ │ ├── lato-bold.woff │ │ │ │ ├── lato-bold.woff2 │ │ │ │ ├── lato-normal-italic.woff │ │ │ │ ├── lato-normal-italic.woff2 │ │ │ │ ├── lato-normal.woff │ │ │ │ └── lato-normal.woff2 │ │ │ └── theme.css │ │ ├── custom.css │ │ ├── doctools.js │ │ ├── documentation_options.js │ │ ├── favicon-cceh-blue.png │ │ ├── file.png │ │ ├── jquery.js │ │ ├── js │ │ │ ├── badge_only.js │ │ │ ├── html5shiv-printshiv.min.js │ │ │ ├── html5shiv.min.js │ │ │ └── theme.js │ │ ├── language_data.js │ │ ├── logo-cceh-white.svg │ │ ├── minus.png │ │ ├── plus.png │ │ ├── pygments.css │ │ ├── searchtools.js │ │ └── sphinx_highlight.js │ ├── builder │ │ ├── builder.html │ │ ├── mccreight.html │ │ ├── naive.html │ │ └── ukkonen.html │ ├── builders.html │ ├── doctrees │ │ ├── builder │ │ │ ├── builder.doctree │ │ │ ├── mccreight.doctree │ │ │ ├── naive.doctree │ │ │ └── ukkonen.doctree │ │ ├── builders.doctree │ │ ├── environment.pickle │ │ ├── examples.doctree │ │ ├── index.doctree │ │ ├── lca.doctree │ │ ├── node.doctree │ │ ├── performance.doctree │ │ ├── references.doctree │ │ ├── tree.doctree │ │ └── util.doctree │ ├── examples.html │ ├── genindex.html │ ├── index.html │ ├── lca.html │ ├── node.html │ ├── objects.inv │ ├── performance.html │ ├── py-modindex.html │ ├── references.html │ ├── search.html │ ├── searchindex.js │ ├── tree.html │ └── util.html ├── _config.yml ├── _images │ ├── badge-coverage.svg │ ├── badge-py310.svg │ ├── badge-py311.svg │ ├── badge-py312.svg │ ├── badge-py39.svg │ ├── badge-pypy39.svg │ ├── coverage.svg │ ├── graph_time_complexity.png │ └── graph_time_complexity_pypy38.png ├── _static │ └── custom.css ├── builder │ ├── builder.rst │ ├── mccreight.rst │ ├── naive.rst │ └── ukkonen.rst ├── builders.rst ├── conf.py ├── examples.rst ├── favicon-cceh-blue.png ├── index.rst ├── lca.rst ├── logo-cceh-white.svg ├── node.rst ├── performance.rst ├── references.rst ├── tree.rst └── util.rst ├── pyproject.toml ├── requirements-dev.txt ├── scripts ├── __init__.py ├── graph_time_complexity.py ├── profile.py └── sample_time_complexity.py ├── src └── suffix_tree │ ├── __init__.py │ ├── _version.py │ ├── builder.py │ ├── builder_factory.py │ ├── lca_mixin.py │ ├── mccreight.py │ ├── naive.py │ ├── node.py │ ├── tree.py │ ├── ukkonen.py │ └── util.py └── tests ├── __init__.py ├── conftest.py ├── make_coverage_badge.py ├── performance ├── __init__.py └── test_time_complexity.py └── unit ├── __init__.py ├── test_builder_factory.py ├── test_common_substrings.py ├── test_dot.py ├── test_find.py ├── test_lca.py ├── test_maximal_repeats.py ├── test_misc.py ├── test_online.py └── test_pre_post_order.py 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