├── LICENSE ├── MA-SAM ├── __pycache__ │ ├── sam_fact_tt_image_encoder.cpython-310.pyc │ ├── sam_lora_image_encoder.cpython-310.pyc │ ├── sam_lora_image_encoder.cpython-38.pyc │ ├── trainer.cpython-310.pyc │ ├── trainer.cpython-38.pyc │ ├── trainer_multiview.cpython-310.pyc │ ├── trainer_v3.cpython-310.pyc │ ├── trainer_v5.cpython-310.pyc │ ├── utils.cpython-310.pyc │ ├── utils_5slice.cpython-310.pyc │ ├── utils_5slice_amos.cpython-310.pyc │ ├── utils_5slice_amos_mr.cpython-310.pyc │ ├── utils_6slice.cpython-310.pyc │ └── utils_v2.cpython-310.pyc ├── datasets │ ├── __init__.py │ ├── __pycache__ │ │ ├── __init__.cpython-310.pyc │ │ ├── dataset.cpython-310.pyc │ │ ├── dataset_synapse.cpython-310.pyc │ │ ├── dataset_synapse_multiview.cpython-310.pyc │ │ ├── dataset_synapse_v3.cpython-310.pyc │ │ └── dataset_synapse_v5.cpython-310.pyc │ ├── dataset.py │ └── dataset_bbox.py ├── sam_fact_tt_image_encoder.py ├── sam_fact_tt_image_encoder_bbox.py ├── segment_anything │ ├── __init__.py │ ├── __pycache__ │ │ ├── __init__.cpython-310.pyc │ │ ├── __init__.cpython-38.pyc │ │ ├── automatic_mask_generator.cpython-310.pyc │ │ ├── automatic_mask_generator.cpython-38.pyc │ │ ├── build_sam.cpython-310.pyc │ │ ├── build_sam.cpython-38.pyc │ │ ├── predictor.cpython-310.pyc │ │ └── predictor.cpython-38.pyc │ ├── automatic_mask_generator.py │ ├── build_sam.py │ ├── modeling │ │ ├── __init__.py │ │ ├── __pycache__ │ │ │ ├── __init__.cpython-310.pyc │ │ │ ├── __init__.cpython-38.pyc │ │ │ ├── common.cpython-310.pyc │ │ │ ├── common.cpython-38.pyc │ │ │ ├── image_encoder.cpython-310.pyc │ │ │ ├── image_encoder.cpython-38.pyc │ │ │ ├── mask_decoder.cpython-310.pyc │ │ │ ├── mask_decoder.cpython-38.pyc │ │ │ ├── prompt_encoder.cpython-310.pyc │ │ │ ├── prompt_encoder.cpython-38.pyc │ │ │ ├── sam.cpython-310.pyc │ │ │ ├── sam.cpython-38.pyc │ │ │ ├── transformer.cpython-310.pyc │ │ │ └── transformer.cpython-38.pyc │ │ ├── common.py │ │ ├── image_encoder.py │ │ ├── mask_decoder.py │ │ ├── mask_decoder_bbox.py │ │ ├── prompt_encoder.py │ │ ├── sam.py │ │ ├── sam_bbox.py │ │ └── transformer.py │ ├── predictor.py │ └── utils │ │ ├── __init__.py │ │ ├── __pycache__ │ │ ├── __init__.cpython-310.pyc │ │ ├── __init__.cpython-38.pyc │ │ ├── amg.cpython-310.pyc │ │ ├── amg.cpython-38.pyc │ │ ├── transforms.cpython-310.pyc │ │ └── transforms.cpython-38.pyc │ │ ├── amg.py │ │ ├── onnx.py │ │ └── transforms.py ├── test.py ├── train.py ├── trainer.py ├── trainer_bbox.py └── utils.py ├── README.md ├── asset ├── README.md └── overview.png ├── preprocessing ├── dataset_split.md ├── split_pancreas.pkl ├── util_script_btcv.py ├── util_script_endovis18.py └── util_script_prostateMRI.py └── requirements.txt /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cchen-cc/MA-SAM/HEAD/LICENSE -------------------------------------------------------------------------------- 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