├── .gitignore ├── .python-version ├── LICENSE ├── README.md ├── alphafold3tools ├── fastatojson.py ├── jsontomsa.py ├── log.py ├── modjson.py ├── msatojson.py ├── paeplot.py ├── sdftoccd.py ├── superpose_ciffiles.py └── utils.py ├── images ├── bwr.png ├── greensr.png ├── plddt.png └── superposed.png ├── pyproject.toml ├── testfiles ├── 1bjp.a3m ├── 1bjp_6.a3m ├── 1bjp_no_header.a3m ├── orobanchol.cif ├── orobanchol.sdf ├── read_data.json ├── sampleafdbpae.json ├── testcomplexseqs.a3m └── testheterocomplex.json └── tests ├── test_fastatojson.py ├── test_jsontomsa.py ├── test_modjson.py ├── test_msatojson.py └── test_sdftoccd.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cddlab/alphafold3_tools/HEAD/.gitignore -------------------------------------------------------------------------------- /.python-version: -------------------------------------------------------------------------------- 1 | 3.12 2 | 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