├── .gitignore ├── CHANGES.txt ├── LICENSE.txt ├── MANIFEST.in ├── README.md ├── bin └── groopm ├── groopm ├── PCA.py ├── __init__.py ├── bin.py ├── binManager.py ├── cluster.py ├── ellipsoid.py ├── groopm.py ├── groopmExceptions.py ├── groopmTimekeeper.py ├── groopmUtils.py ├── mstore.py ├── profileManager.py ├── rainbow.py ├── refine.py ├── som.py └── torusMesh.py └── setup.py /.gitignore: -------------------------------------------------------------------------------- 1 | MANIFEST 2 | build/ 3 | dist/ 4 | groopm/*.pyc 5 | pip-log.txt 6 | -------------------------------------------------------------------------------- /CHANGES.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/centre-for-microbiome-research/GroopM/HEAD/CHANGES.txt -------------------------------------------------------------------------------- /LICENSE.txt: -------------------------------------------------------------------------------- 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