├── .gitignore ├── figures ├── g4.8 │ ├── fig_tf.pdf │ ├── fig_proportion_regions.pdf │ ├── fig_model_vs_reality_geneva.pdf │ ├── fig_proportion_hug_geneva.pdf │ ├── fig_model_vs_reality_regions.pdf │ ├── fig_model_vs_reality_hug_geneva.pdf │ ├── fig_proportion_switzerland_viollier_risch.pdf │ ├── fig_model_vs_reality_switzerland_viollier_risch.pdf │ └── tbl_growth_rates.csv ├── g5.2 │ ├── fig_tf.pdf │ ├── fig_proportion_regions.pdf │ ├── fig_model_vs_reality_geneva.pdf │ ├── fig_proportion_hug_geneva.pdf │ ├── fig_model_vs_reality_regions.pdf │ ├── fig_model_vs_reality_hug_geneva.pdf │ ├── fig_proportion_switzerland_viollier_risch.pdf │ ├── fig_model_vs_reality_switzerland_viollier_risch.pdf │ └── tbl_growth_rates.csv ├── g7.6 │ ├── fig_tf.pdf │ ├── fig_proportion_regions.pdf │ ├── fig_model_vs_reality_geneva.pdf │ ├── fig_proportion_hug_geneva.pdf │ ├── fig_model_vs_reality_regions.pdf │ ├── fig_model_vs_reality_hug_geneva.pdf │ ├── fig_proportion_switzerland_viollier_risch.pdf │ ├── fig_model_vs_reality_switzerland_viollier_risch.pdf │ └── tbl_growth_rates.csv └── Re │ ├── B117_Re_risch.pdf │ ├── B117_raw_risch.pdf │ ├── Re_diff_risch.pdf │ ├── Re_ratio_risch.pdf │ ├── B117_Re_viollier.pdf │ ├── Re_diff_viollier.pdf │ ├── B117_Re_hug_geneva.pdf │ ├── B117_deconv_risch.pdf │ ├── B117_raw_hug_geneva.pdf │ ├── B117_raw_viollier.pdf │ ├── Re_diff_hug_geneva.pdf │ ├── Re_ratio_hug_geneva.pdf │ ├── Re_ratio_viollier.pdf │ ├── B117_deconv_viollier.pdf │ ├── B117_deconv_hug_geneva.pdf │ ├── mean_deconv_hug_geneva.csv │ ├── mean_deconv_viollier.csv │ ├── mean_deconv_risch.csv │ ├── all_Re_hug_geneva.csv │ ├── all_Re_viollier.csv │ └── all_Re_risch.csv ├── code ├── requirements.txt ├── base_classes.py ├── Re │ ├── data │ │ ├── estimated_case_numbers_viollier_Grossregion Tessin.csv │ │ ├── estimated_case_numbers_hug_geneva.csv │ │ ├── estimated_case_numbers_viollier_Central Switzerland.csv │ │ ├── estimated_case_numbers_viollier_Grossregion Nordwestschweiz.csv │ │ ├── estimated_case_numbers_viollier.csv │ │ ├── estimated_case_numbers_viollier_Ostschweiz.csv │ │ ├── estimated_case_numbers_viollier_Lake Geneva region.csv │ │ ├── estimated_case_numbers_risch.csv │ │ ├── estimated_case_numbers_viollier_Grossregion Zurich.csv │ │ └── estimated_case_numbers_viollier_Espace Mittelland.csv │ ├── Re_functions.R │ ├── estimate_Re_canton.R │ └── estimate_Re.R └── utils.py ├── README.md ├── data ├── data_variants_per_day_hug_geneva.csv ├── data_variants_per_day_risch.csv └── data_variants_per_day_and_grossregion_viollier.csv └── docs └── index.html /.gitignore: -------------------------------------------------------------------------------- 1 | # Editors 2 | /.idea/ 3 | 4 | 5 | # Python 6 | /venv/ 7 | __pycache__/ 8 | -------------------------------------------------------------------------------- /figures/g4.8/fig_tf.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cevo-public/Quantification-of-the-spread-of-a-SARS-CoV-2-variant/HEAD/figures/g4.8/fig_tf.pdf -------------------------------------------------------------------------------- /figures/g5.2/fig_tf.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cevo-public/Quantification-of-the-spread-of-a-SARS-CoV-2-variant/HEAD/figures/g5.2/fig_tf.pdf -------------------------------------------------------------------------------- /figures/g7.6/fig_tf.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cevo-public/Quantification-of-the-spread-of-a-SARS-CoV-2-variant/HEAD/figures/g7.6/fig_tf.pdf -------------------------------------------------------------------------------- /figures/Re/B117_Re_risch.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cevo-public/Quantification-of-the-spread-of-a-SARS-CoV-2-variant/HEAD/figures/Re/B117_Re_risch.pdf -------------------------------------------------------------------------------- /figures/Re/B117_raw_risch.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cevo-public/Quantification-of-the-spread-of-a-SARS-CoV-2-variant/HEAD/figures/Re/B117_raw_risch.pdf -------------------------------------------------------------------------------- /figures/Re/Re_diff_risch.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cevo-public/Quantification-of-the-spread-of-a-SARS-CoV-2-variant/HEAD/figures/Re/Re_diff_risch.pdf -------------------------------------------------------------------------------- /figures/Re/Re_ratio_risch.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cevo-public/Quantification-of-the-spread-of-a-SARS-CoV-2-variant/HEAD/figures/Re/Re_ratio_risch.pdf -------------------------------------------------------------------------------- /figures/Re/B117_Re_viollier.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cevo-public/Quantification-of-the-spread-of-a-SARS-CoV-2-variant/HEAD/figures/Re/B117_Re_viollier.pdf -------------------------------------------------------------------------------- /figures/Re/Re_diff_viollier.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cevo-public/Quantification-of-the-spread-of-a-SARS-CoV-2-variant/HEAD/figures/Re/Re_diff_viollier.pdf -------------------------------------------------------------------------------- /figures/Re/B117_Re_hug_geneva.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cevo-public/Quantification-of-the-spread-of-a-SARS-CoV-2-variant/HEAD/figures/Re/B117_Re_hug_geneva.pdf -------------------------------------------------------------------------------- /figures/Re/B117_deconv_risch.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cevo-public/Quantification-of-the-spread-of-a-SARS-CoV-2-variant/HEAD/figures/Re/B117_deconv_risch.pdf -------------------------------------------------------------------------------- /figures/Re/B117_raw_hug_geneva.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cevo-public/Quantification-of-the-spread-of-a-SARS-CoV-2-variant/HEAD/figures/Re/B117_raw_hug_geneva.pdf -------------------------------------------------------------------------------- /figures/Re/B117_raw_viollier.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cevo-public/Quantification-of-the-spread-of-a-SARS-CoV-2-variant/HEAD/figures/Re/B117_raw_viollier.pdf -------------------------------------------------------------------------------- /figures/Re/Re_diff_hug_geneva.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cevo-public/Quantification-of-the-spread-of-a-SARS-CoV-2-variant/HEAD/figures/Re/Re_diff_hug_geneva.pdf -------------------------------------------------------------------------------- /figures/Re/Re_ratio_hug_geneva.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cevo-public/Quantification-of-the-spread-of-a-SARS-CoV-2-variant/HEAD/figures/Re/Re_ratio_hug_geneva.pdf -------------------------------------------------------------------------------- /figures/Re/Re_ratio_viollier.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cevo-public/Quantification-of-the-spread-of-a-SARS-CoV-2-variant/HEAD/figures/Re/Re_ratio_viollier.pdf -------------------------------------------------------------------------------- /figures/Re/B117_deconv_viollier.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cevo-public/Quantification-of-the-spread-of-a-SARS-CoV-2-variant/HEAD/figures/Re/B117_deconv_viollier.pdf -------------------------------------------------------------------------------- /figures/Re/B117_deconv_hug_geneva.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cevo-public/Quantification-of-the-spread-of-a-SARS-CoV-2-variant/HEAD/figures/Re/B117_deconv_hug_geneva.pdf -------------------------------------------------------------------------------- /figures/g4.8/fig_proportion_regions.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cevo-public/Quantification-of-the-spread-of-a-SARS-CoV-2-variant/HEAD/figures/g4.8/fig_proportion_regions.pdf -------------------------------------------------------------------------------- /figures/g5.2/fig_proportion_regions.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cevo-public/Quantification-of-the-spread-of-a-SARS-CoV-2-variant/HEAD/figures/g5.2/fig_proportion_regions.pdf -------------------------------------------------------------------------------- /figures/g7.6/fig_proportion_regions.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cevo-public/Quantification-of-the-spread-of-a-SARS-CoV-2-variant/HEAD/figures/g7.6/fig_proportion_regions.pdf -------------------------------------------------------------------------------- /figures/g4.8/fig_model_vs_reality_geneva.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cevo-public/Quantification-of-the-spread-of-a-SARS-CoV-2-variant/HEAD/figures/g4.8/fig_model_vs_reality_geneva.pdf -------------------------------------------------------------------------------- /figures/g4.8/fig_proportion_hug_geneva.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cevo-public/Quantification-of-the-spread-of-a-SARS-CoV-2-variant/HEAD/figures/g4.8/fig_proportion_hug_geneva.pdf -------------------------------------------------------------------------------- /figures/g5.2/fig_model_vs_reality_geneva.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cevo-public/Quantification-of-the-spread-of-a-SARS-CoV-2-variant/HEAD/figures/g5.2/fig_model_vs_reality_geneva.pdf -------------------------------------------------------------------------------- /figures/g5.2/fig_proportion_hug_geneva.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cevo-public/Quantification-of-the-spread-of-a-SARS-CoV-2-variant/HEAD/figures/g5.2/fig_proportion_hug_geneva.pdf -------------------------------------------------------------------------------- /figures/g7.6/fig_model_vs_reality_geneva.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cevo-public/Quantification-of-the-spread-of-a-SARS-CoV-2-variant/HEAD/figures/g7.6/fig_model_vs_reality_geneva.pdf -------------------------------------------------------------------------------- /figures/g7.6/fig_proportion_hug_geneva.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cevo-public/Quantification-of-the-spread-of-a-SARS-CoV-2-variant/HEAD/figures/g7.6/fig_proportion_hug_geneva.pdf -------------------------------------------------------------------------------- /figures/g4.8/fig_model_vs_reality_regions.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cevo-public/Quantification-of-the-spread-of-a-SARS-CoV-2-variant/HEAD/figures/g4.8/fig_model_vs_reality_regions.pdf -------------------------------------------------------------------------------- /figures/g5.2/fig_model_vs_reality_regions.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cevo-public/Quantification-of-the-spread-of-a-SARS-CoV-2-variant/HEAD/figures/g5.2/fig_model_vs_reality_regions.pdf -------------------------------------------------------------------------------- /figures/g7.6/fig_model_vs_reality_regions.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cevo-public/Quantification-of-the-spread-of-a-SARS-CoV-2-variant/HEAD/figures/g7.6/fig_model_vs_reality_regions.pdf -------------------------------------------------------------------------------- /figures/g4.8/fig_model_vs_reality_hug_geneva.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cevo-public/Quantification-of-the-spread-of-a-SARS-CoV-2-variant/HEAD/figures/g4.8/fig_model_vs_reality_hug_geneva.pdf -------------------------------------------------------------------------------- /figures/g5.2/fig_model_vs_reality_hug_geneva.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cevo-public/Quantification-of-the-spread-of-a-SARS-CoV-2-variant/HEAD/figures/g5.2/fig_model_vs_reality_hug_geneva.pdf -------------------------------------------------------------------------------- /figures/g7.6/fig_model_vs_reality_hug_geneva.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cevo-public/Quantification-of-the-spread-of-a-SARS-CoV-2-variant/HEAD/figures/g7.6/fig_model_vs_reality_hug_geneva.pdf -------------------------------------------------------------------------------- /figures/g4.8/fig_proportion_switzerland_viollier_risch.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cevo-public/Quantification-of-the-spread-of-a-SARS-CoV-2-variant/HEAD/figures/g4.8/fig_proportion_switzerland_viollier_risch.pdf -------------------------------------------------------------------------------- /figures/g5.2/fig_proportion_switzerland_viollier_risch.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cevo-public/Quantification-of-the-spread-of-a-SARS-CoV-2-variant/HEAD/figures/g5.2/fig_proportion_switzerland_viollier_risch.pdf -------------------------------------------------------------------------------- /figures/g7.6/fig_proportion_switzerland_viollier_risch.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cevo-public/Quantification-of-the-spread-of-a-SARS-CoV-2-variant/HEAD/figures/g7.6/fig_proportion_switzerland_viollier_risch.pdf -------------------------------------------------------------------------------- /figures/g4.8/fig_model_vs_reality_switzerland_viollier_risch.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cevo-public/Quantification-of-the-spread-of-a-SARS-CoV-2-variant/HEAD/figures/g4.8/fig_model_vs_reality_switzerland_viollier_risch.pdf -------------------------------------------------------------------------------- /figures/g5.2/fig_model_vs_reality_switzerland_viollier_risch.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cevo-public/Quantification-of-the-spread-of-a-SARS-CoV-2-variant/HEAD/figures/g5.2/fig_model_vs_reality_switzerland_viollier_risch.pdf -------------------------------------------------------------------------------- /figures/g7.6/fig_model_vs_reality_switzerland_viollier_risch.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cevo-public/Quantification-of-the-spread-of-a-SARS-CoV-2-variant/HEAD/figures/g7.6/fig_model_vs_reality_switzerland_viollier_risch.pdf -------------------------------------------------------------------------------- /code/requirements.txt: -------------------------------------------------------------------------------- 1 | cycler==0.10.0 2 | joblib==1.0.1 3 | kiwisolver==1.3.1 4 | matplotlib==3.3.4 5 | numpy==1.20.1 6 | pandas==1.2.2 7 | patsy==0.5.1 8 | Pillow==8.1.0 9 | pyparsing==2.4.7 10 | python-dateutil==2.8.1 11 | pytz==2021.1 12 | scipy==1.6.0 13 | six==1.15.0 14 | statsmodels==0.12.2 15 | tqdm==4.56.1 16 | -------------------------------------------------------------------------------- /figures/g4.8/tbl_growth_rates.csv: -------------------------------------------------------------------------------- 1 | Region,$a$,$t_0$,$f_d$,$f_c$ 2 | Switzerland (Viollier),0.08 [0.08; 0.09],65 [64; 66],0.48 [0.46; 0.50],0.48 [0.46; 0.49] 3 | Switzerland (Risch),0.08 [0.08; 0.08],69 [68; 70],0.46 [0.44; 0.47],0.45 [0.44; 0.47] 4 | Central Switzerland,0.09 [0.07; 0.11],73 [68; 77],0.54 [0.42; 0.65],0.52 [0.43; 0.61] 5 | Espace Mittelland,0.07 [0.07; 0.08],64 [63; 66],0.41 [0.38; 0.44],0.41 [0.39; 0.44] 6 | Grossregion Nordwestschweiz,0.08 [0.08; 0.09],67 [66; 69],0.50 [0.46; 0.54],0.49 [0.46; 0.52] 7 | Grossregion Tessin,0.09 [0.06; 0.12],74 [69; 79],0.54 [0.34; 0.74],0.52 [0.36; 0.68] 8 | Grossregion Zurich,0.09 [0.08; 0.10],68 [66; 70],0.55 [0.49; 0.61],0.53 [0.48; 0.58] 9 | Lake Geneva region,0.09 [0.08; 0.10],54 [52; 56],0.56 [0.48; 0.64],0.53 [0.47; 0.60] 10 | Ostschweiz,0.10 [0.09; 0.12],64 [61; 66],0.65 [0.54; 0.76],0.60 [0.53; 0.68] 11 | Geneva (HUG),0.07 [0.07; 0.08],51 [50; 53],0.40 [0.37; 0.44],0.41 [0.38; 0.44] 12 | -------------------------------------------------------------------------------- /figures/g5.2/tbl_growth_rates.csv: -------------------------------------------------------------------------------- 1 | Region,$a$,$t_0$,$f_d$,$f_c$ 2 | Switzerland (Viollier),0.08 [0.08; 0.09],65 [64; 66],0.53 [0.51; 0.56],0.51 [0.50; 0.53] 3 | Switzerland (Risch),0.08 [0.08; 0.08],69 [68; 70],0.50 [0.48; 0.52],0.49 [0.47; 0.50] 4 | Central Switzerland,0.09 [0.07; 0.11],73 [68; 77],0.59 [0.46; 0.73],0.56 [0.46; 0.66] 5 | Espace Mittelland,0.07 [0.07; 0.08],64 [63; 66],0.45 [0.42; 0.49],0.45 [0.42; 0.48] 6 | Grossregion Nordwestschweiz,0.08 [0.08; 0.09],67 [66; 69],0.55 [0.51; 0.59],0.53 [0.50; 0.56] 7 | Grossregion Tessin,0.09 [0.06; 0.12],74 [69; 79],0.60 [0.37; 0.82],0.56 [0.39; 0.73] 8 | Grossregion Zurich,0.09 [0.08; 0.10],68 [66; 70],0.61 [0.54; 0.68],0.57 [0.52; 0.62] 9 | Lake Geneva region,0.09 [0.08; 0.10],54 [52; 56],0.62 [0.53; 0.71],0.58 [0.51; 0.65] 10 | Ostschweiz,0.10 [0.09; 0.12],64 [61; 66],0.72 [0.60; 0.84],0.65 [0.57; 0.74] 11 | Geneva (HUG),0.07 [0.07; 0.08],51 [50; 53],0.44 [0.40; 0.48],0.44 [0.41; 0.48] 12 | -------------------------------------------------------------------------------- /figures/g7.6/tbl_growth_rates.csv: -------------------------------------------------------------------------------- 1 | Region,$a$,$t_0$,$f_d$,$f_c$ 2 | Switzerland (Viollier),0.08 [0.08; 0.09],65 [64; 66],0.87 [0.83; 0.91],0.75 [0.73; 0.78] 3 | Switzerland (Risch),0.08 [0.08; 0.08],69 [68; 70],0.81 [0.78; 0.85],0.71 [0.69; 0.74] 4 | Central Switzerland,0.09 [0.07; 0.11],73 [68; 77],0.97 [0.73; 1.21],0.82 [0.67; 0.97] 5 | Espace Mittelland,0.07 [0.07; 0.08],64 [63; 66],0.72 [0.66; 0.78],0.66 [0.61; 0.70] 6 | Grossregion Nordwestschweiz,0.08 [0.08; 0.09],67 [66; 69],0.90 [0.83; 0.98],0.77 [0.73; 0.82] 7 | Grossregion Tessin,0.09 [0.06; 0.12],74 [69; 79],0.98 [0.57; 1.39],0.82 [0.57; 1.07] 8 | Grossregion Zurich,0.09 [0.08; 0.10],68 [66; 70],1.00 [0.88; 1.13],0.84 [0.76; 0.91] 9 | Lake Geneva region,0.09 [0.08; 0.10],54 [52; 56],1.02 [0.86; 1.18],0.85 [0.75; 0.94] 10 | Ostschweiz,0.10 [0.09; 0.12],64 [61; 66],1.21 [0.99; 1.43],0.95 [0.83; 1.08] 11 | Geneva (HUG),0.07 [0.07; 0.08],51 [50; 53],0.71 [0.64; 0.78],0.65 [0.60; 0.69] 12 | -------------------------------------------------------------------------------- /code/base_classes.py: -------------------------------------------------------------------------------- 1 | from dataclasses import dataclass 2 | from typing import List, Any 3 | 4 | import pandas as pd 5 | 6 | 7 | @dataclass 8 | class Dataset: 9 | # columns: date:datetime, year:int, week:int, t:int, region:str (optional), cases:int 10 | cases: pd.DataFrame 11 | 12 | # columns: date:datetime, region:str (optional), sequenced:int, b117:int, original:int 13 | variants: pd.DataFrame 14 | 15 | 16 | @dataclass 17 | class PlotConfig: 18 | colors: List[str] 19 | greys: List[str] 20 | 21 | 22 | @dataclass(frozen=True) 23 | class ConfidenceInterval: 24 | lower: float 25 | upper: float 26 | 27 | 28 | @dataclass(frozen=True) 29 | class GrowthNumbers: 30 | alpha: float 31 | generation_time: float 32 | reproduction_number: float 33 | a_mle: float 34 | a_ci: ConfidenceInterval 35 | t0_mle: float 36 | t0_ci: ConfidenceInterval 37 | fd_mle: float # Discrete setting, exp(a*g)-1 38 | fd_ci: ConfidenceInterval 39 | fc_mle: float # Continuous setting, a*g 40 | fc_ci: ConfidenceInterval 41 | statsmodel_model: Any 42 | -------------------------------------------------------------------------------- /code/Re/data/estimated_case_numbers_viollier_Grossregion Tessin.csv: -------------------------------------------------------------------------------- 1 | date,b117,original 2 | 2020-12-14,0.0,378.0 3 | 2020-12-17,0.0,261.0 4 | 2020-12-18,, 5 | 2020-12-22,0.0,263.0 6 | 2020-12-29,0.0,314.0 7 | 2020-12-30,0.0,322.0 8 | 2020-12-31,, 9 | 2021-01-04,0.0,330.0 10 | 2021-01-05,0.0,251.0 11 | 2021-01-08,64.0,95.0 12 | 2021-01-11,0.0,163.0 13 | 2021-01-12,0.0,129.0 14 | 2021-01-13,0.0,83.0 15 | 2021-01-14,0.0,97.0 16 | 2021-01-15,0.0,105.0 17 | 2021-01-16,, 18 | 2021-01-18,0.0,125.0 19 | 2021-01-19,0.0,74.0 20 | 2021-01-22,0.0,50.0 21 | 2021-01-25,0.0,63.0 22 | 2021-01-26,, 23 | 2021-01-27,0.0,46.0 24 | 2021-01-29,0.0,45.0 25 | 2021-02-01,0.0,59.0 26 | 2021-02-03,26.0,40.0 27 | 2021-02-04,18.0,35.0 28 | 2021-02-05,0.0,43.0 29 | 2021-02-06,, 30 | 2021-02-08,0.0,73.0 31 | 2021-02-09,0.0,62.0 32 | 2021-02-11,40.0,0.0 33 | 2021-02-15,0.0,40.0 34 | 2021-02-16,0.0,38.0 35 | 2021-02-17,5.0,47.0 36 | 2021-02-19,, 37 | 2021-02-22,34.0,34.0 38 | 2021-02-23,0.0,57.0 39 | 2021-02-24,39.0,0.0 40 | 2021-02-25,56.0,0.0 41 | 2021-02-26,, 42 | 2021-03-01,72.0,0.0 43 | 2021-03-02,0.0,56.0 44 | 2021-03-03,28.0,28.0 45 | 2021-03-05,30.0,30.0 46 | 2021-03-06,33.0,0.0 47 | 2021-03-08,33.0,65.0 48 | 2021-03-09,77.0,0.0 49 | 2021-03-10,48.0,32.0 50 | 2021-03-11,76.0,0.0 51 | 2021-03-12,68.0,0.0 52 | 2021-03-15,89.0,18.0 53 | 2021-03-16,89.0,0.0 54 | 2021-03-17,64.0,0.0 55 | 2021-03-18,97.0,0.0 56 | 2021-03-20,82.0,0.0 57 | 2021-03-22,0.0,121.0 58 | 2021-03-23,114.0,0.0 59 | 2021-03-24,104.0,0.0 60 | 2021-03-25,99.0,0.0 61 | 2021-03-26,88.0,0.0 62 | 2021-03-29,127.0,0.0 63 | -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- 1 | # Quantification of the spread of SARS-CoV-2 variant B.1.1.7 in Switzerland 2 | 3 | Here lives the code and data for *Chen, Chaoran, et al. "Quantification of the spread of SARS-CoV-2 variant B.1.1.7 in Switzerland." Epidemics (2021); doi: [10.1016/j.epidem.2021.100480](https://doi.org/10.1016/j.epidem.2021.100480).* 4 | 5 | Zenodo archive of this repository: [10.5281/zenodo.7979278](https://doi.org/10.5281/zenodo.7979278) 6 | 7 | [Our website](https://cevo-public.github.io/Quantification-of-the-spread-of-a-SARS-CoV-2-variant/) gives a concise description about the data and puts the figures into context. 8 | 9 | **This repository was updated between mid-January and mid-April 2021. For newer information, please visit [CoV-Spectrum](https://cov-spectrum.ethz.ch/).** 10 | 11 | 12 | ## Program 13 | 14 | ### Overview 15 | 16 | The analysis is performed in two steps by different sub-programs. In the first step, taking the overall number of reported cases and the results from sequencing, the `code/analysis_and_plots.py` script estimates the advantage of the variant and creates plots of the estimated proportion and cases through time under different assumptions. The generated plots are stored in `figures/`. Further, the script estimates the number of absolute cases of the variant and writes them into `code/Re/data/`. Then, in the second step, the `code/Re/estimate_Re.R` script takes the computed values from `code/Re/data/` and estimates the Re. The resulting values and plots are stored in `code/Re/figures/`. 17 | 18 | ### Usage 19 | 20 | #### Install Dependencies 21 | 22 | - Python and the packages defined in `code/requirements.txt` 23 | - R and the packages `tidyverse, lubridate, viridis, EpiEstim` 24 | - Further, this program requires the [shiny-dailyRe project](https://github.com/covid-19-Re/shiny-dailyRe). Please clone that repository and install its dependencies. 25 | 26 | 27 | #### Run 28 | 29 | 1. Run `analysis_and_plots.py`. It does not need further configurations. 30 | 2. Open `code/Re/estimate_Re.R` and set the `app_dir` variable to the path of the cloned shiny-dailyRe repository. 31 | 3. Run `estimate_Re.R` 32 | -------------------------------------------------------------------------------- /code/Re/data/estimated_case_numbers_hug_geneva.csv: -------------------------------------------------------------------------------- 1 | date,b117,original 2 | 2020-12-23,0,4471 3 | 2020-12-24,0,3047 4 | 2020-12-25,0,1721 5 | 2020-12-26,883,1472 6 | 2020-12-27,0,2114 7 | 2020-12-28,280,4752 8 | 2020-12-29,0,4460 9 | 2020-12-30,0,4210 10 | 2020-12-31,266,2788 11 | 2021-01-01,73,1606 12 | 2021-01-02,0,2718 13 | 2021-01-06,3348,0 14 | 2021-01-08,1016,2033 15 | 2021-01-09,109,1573 16 | 2021-01-10,226,1067 17 | 2021-01-11,561,2898 18 | 2021-01-12,834,1773 19 | 2021-01-13,262,2199 20 | 2021-01-14,176,2062 21 | 2021-01-15,319,1840 22 | 2021-01-16,284,1053 23 | 2021-01-17,251,641 24 | 2021-01-18,726,2220 25 | 2021-01-19,518,1812 26 | 2021-01-20,320,1959 27 | 2021-01-21,200,1855 28 | 2021-01-22,951,1086 29 | 2021-01-23,251,847 30 | 2021-01-24,228,504 31 | 2021-01-25,607,1882 32 | 2021-01-26,780,1058 33 | 2021-01-27,827,1043 34 | 2021-01-28,751,1028 35 | 2021-01-29,718,1047 36 | 2021-01-30,453,566 37 | 2021-01-31,360,378 38 | 2021-02-01,951,1211 39 | 2021-02-02,1021,629 40 | 2021-02-03,1278,451 41 | 2021-02-04,834,609 42 | 2021-02-05,945,561 43 | 2021-02-06,591,296 44 | 2021-02-07,240,433 45 | 2021-02-08,1223,524 46 | 2021-02-09,1010,337 47 | 2021-02-10,971,286 48 | 2021-02-11,850,322 49 | 2021-02-12,860,271 50 | 2021-02-13,479,239 51 | 2021-02-14,242,242 52 | 2021-02-15,1034,272 53 | 2021-02-16,708,431 54 | 2021-02-17,810,405 55 | 2021-02-18,614,391 56 | 2021-02-19,796,299 57 | 2021-02-20,501,191 58 | 2021-02-21,430,94 59 | 2021-02-22,1117,292 60 | 2021-02-23,979,280 61 | 2021-02-24,815,261 62 | 2021-02-25,830,291 63 | 2021-02-26,1082,0 64 | 2021-02-27,663,60 65 | 2021-02-28,500,47 66 | 2021-03-01,1330,89 67 | 2021-03-02,1106,123 68 | 2021-03-03,1091,149 69 | 2021-03-04,986,76 70 | 2021-03-05,1230,47 71 | 2021-03-06,710,55 72 | 2021-03-07,521,61 73 | 2021-03-08,1702,0 74 | 2021-03-09,1298,89 75 | 2021-03-10,1256,130 76 | 2021-03-11,1184,154 77 | 2021-03-12,1238,103 78 | 2021-03-13,761,160 79 | 2021-03-14,672,32 80 | 2021-03-15,1920,0 81 | 2021-03-16,1438,212 82 | 2021-03-17,1660,166 83 | 2021-03-18,1558,87 84 | 2021-03-19,1366,178 85 | 2021-03-20,995,114 86 | 2021-03-21,706,81 87 | 2021-03-22,2129,133 88 | 2021-03-23,1718,275 89 | 2021-03-24,1825,104 90 | 2021-03-25,2139,0 91 | -------------------------------------------------------------------------------- /code/Re/data/estimated_case_numbers_viollier_Central Switzerland.csv: -------------------------------------------------------------------------------- 1 | date,b117,original 2 | 2020-12-14,0.0,582.0 3 | 2020-12-15,0.0,541.0 4 | 2020-12-16,0.0,491.0 5 | 2020-12-18,0.0,458.0 6 | 2020-12-19,0.0,276.0 7 | 2020-12-20,0.0,184.0 8 | 2020-12-21,0.0,530.0 9 | 2020-12-22,0.0,504.0 10 | 2020-12-23,0.0,432.0 11 | 2020-12-24,352.0,0.0 12 | 2020-12-25,0.0,150.0 13 | 2020-12-26,0.0,294.0 14 | 2020-12-27,0.0,168.0 15 | 2020-12-28,0.0,530.0 16 | 2020-12-29,0.0,461.0 17 | 2020-12-30,0.0,437.0 18 | 2020-12-31,0.0,326.0 19 | 2021-01-02,0.0,297.0 20 | 2021-01-03,0.0,195.0 21 | 2021-01-04,0.0,524.0 22 | 2021-01-05,22.0,441.0 23 | 2021-01-06,0.0,391.0 24 | 2021-01-07,0.0,357.0 25 | 2021-01-08,0.0,311.0 26 | 2021-01-09,13.0,150.0 27 | 2021-01-10,0.0,154.0 28 | 2021-01-11,0.0,401.0 29 | 2021-01-12,0.0,287.0 30 | 2021-01-13,40.0,218.0 31 | 2021-01-14,0.0,233.0 32 | 2021-01-15,0.0,262.0 33 | 2021-01-16,0.0,140.0 34 | 2021-01-18,0.0,271.0 35 | 2021-01-19,0.0,255.0 36 | 2021-01-20,0.0,222.0 37 | 2021-01-21,0.0,181.0 38 | 2021-01-22,0.0,215.0 39 | 2021-01-23,55.0,55.0 40 | 2021-01-24,0.0,42.0 41 | 2021-01-25,14.0,188.0 42 | 2021-01-26,0.0,164.0 43 | 2021-01-27,0.0,148.0 44 | 2021-01-28,36.0,110.0 45 | 2021-01-29,0.0,177.0 46 | 2021-01-30,0.0,56.0 47 | 2021-02-01,22.0,194.0 48 | 2021-02-02,24.0,118.0 49 | 2021-02-03,36.0,109.0 50 | 2021-02-04,0.0,131.0 51 | 2021-02-05,62.0,62.0 52 | 2021-02-06,0.0,78.0 53 | 2021-02-07,0.0,55.0 54 | 2021-02-08,24.0,121.0 55 | 2021-02-09,0.0,112.0 56 | 2021-02-10,18.0,74.0 57 | 2021-02-11,0.0,82.0 58 | 2021-02-12,50.0,34.0 59 | 2021-02-13,0.0,40.0 60 | 2021-02-16,0.0,101.0 61 | 2021-02-17,28.0,56.0 62 | 2021-02-18,0.0,57.0 63 | 2021-02-19,32.0,63.0 64 | 2021-02-22,40.0,40.0 65 | 2021-02-23,0.0,83.0 66 | 2021-02-24,70.0,24.0 67 | 2021-02-25,0.0,81.0 68 | 2021-02-27,, 69 | 2021-03-01,109.0,0.0 70 | 2021-03-03,52.0,52.0 71 | 2021-03-04,68.0,34.0 72 | 2021-03-05,50.0,50.0 73 | 2021-03-06,58.0,19.0 74 | 2021-03-08,163.0,0.0 75 | 2021-03-09,154.0,0.0 76 | 2021-03-10,74.0,37.0 77 | 2021-03-11,82.0,41.0 78 | 2021-03-12,0.0,129.0 79 | 2021-03-13,, 80 | 2021-03-15,103.0,52.0 81 | 2021-03-16,116.0,29.0 82 | 2021-03-17,153.0,0.0 83 | 2021-03-18,139.0,0.0 84 | 2021-03-20,101.0,0.0 85 | 2021-03-22,190.0,0.0 86 | 2021-03-23,165.0,0.0 87 | 2021-03-24,157.0,0.0 88 | 2021-03-25,204.0,0.0 89 | 2021-03-26,167.0,0.0 90 | 2021-03-29,222.0,0.0 91 | -------------------------------------------------------------------------------- /code/Re/data/estimated_case_numbers_viollier_Grossregion Nordwestschweiz.csv: -------------------------------------------------------------------------------- 1 | date,b117,original 2 | 2020-12-14,0,884 3 | 2020-12-15,0,841 4 | 2020-12-16,0,772 5 | 2020-12-17,0,712 6 | 2020-12-18,0,651 7 | 2020-12-19,0,359 8 | 2020-12-20,0,261 9 | 2020-12-21,0,927 10 | 2020-12-22,0,697 11 | 2020-12-23,0,753 12 | 2020-12-24,0,438 13 | 2020-12-25,0,220 14 | 2020-12-26,0,342 15 | 2020-12-27,0,278 16 | 2020-12-28,0,691 17 | 2020-12-29,0,625 18 | 2020-12-30,0,581 19 | 2020-12-31,0,381 20 | 2021-01-01,0,251 21 | 2021-01-02,0,339 22 | 2021-01-03,0,277 23 | 2021-01-04,7,691 24 | 2021-01-05,8,475 25 | 2021-01-06,0,443 26 | 2021-01-07,8,350 27 | 2021-01-08,0,370 28 | 2021-01-09,0,241 29 | 2021-01-10,0,165 30 | 2021-01-11,9,440 31 | 2021-01-12,8,315 32 | 2021-01-13,5,318 33 | 2021-01-14,7,283 34 | 2021-01-15,6,230 35 | 2021-01-16,0,148 36 | 2021-01-17,12,92 37 | 2021-01-18,19,372 38 | 2021-01-19,11,299 39 | 2021-01-20,38,257 40 | 2021-01-21,46,224 41 | 2021-01-22,6,251 42 | 2021-01-23,8,134 43 | 2021-01-24,11,58 44 | 2021-01-25,31,293 45 | 2021-01-26,22,212 46 | 2021-01-27,27,192 47 | 2021-01-28,60,164 48 | 2021-01-29,35,131 49 | 2021-01-30,8,111 50 | 2021-01-31,18,73 51 | 2021-02-01,69,187 52 | 2021-02-02,48,145 53 | 2021-02-03,36,139 54 | 2021-02-04,11,157 55 | 2021-02-05,92,105 56 | 2021-02-06,14,81 57 | 2021-02-07,65,33 58 | 2021-02-08,34,143 59 | 2021-02-09,45,109 60 | 2021-02-10,80,63 61 | 2021-02-11,23,94 62 | 2021-02-12,54,101 63 | 2021-02-13,40,37 64 | 2021-02-14,6,38 65 | 2021-02-15,36,112 66 | 2021-02-16,29,62 67 | 2021-02-17,53,78 68 | 2021-02-18,21,83 69 | 2021-02-19,42,85 70 | 2021-02-20,62,0 71 | 2021-02-21,29,23 72 | 2021-02-22,75,69 73 | 2021-02-23,91,41 74 | 2021-02-24,70,47 75 | 2021-02-25,72,72 76 | 2021-02-26,50,100 77 | 2021-02-27,32,53 78 | 2021-03-01,101,60 79 | 2021-03-02,119,29 80 | 2021-03-03,137,14 81 | 2021-03-04,93,27 82 | 2021-03-05,99,30 83 | 2021-03-06,66,19 84 | 2021-03-07,56,0 85 | 2021-03-08,190,14 86 | 2021-03-09,169,21 87 | 2021-03-10,188,36 88 | 2021-03-11,125,63 89 | 2021-03-12,128,41 90 | 2021-03-13,115,21 91 | 2021-03-14,87,14 92 | 2021-03-15,283,15 93 | 2021-03-16,228,21 94 | 2021-03-17,269,21 95 | 2021-03-18,210,8 96 | 2021-03-19,206,20 97 | 2021-03-20,149,7 98 | 2021-03-21,104,14 99 | 2021-03-22,276,13 100 | 2021-03-23,249,23 101 | 2021-03-24,217,39 102 | 2021-03-25,254,13 103 | 2021-03-26,250,24 104 | 2021-03-27,134,0 105 | 2021-03-29,253,51 106 | -------------------------------------------------------------------------------- /code/Re/data/estimated_case_numbers_viollier.csv: -------------------------------------------------------------------------------- 1 | date,b117,original 2 | 2020-12-14,0,5915 3 | 2020-12-15,0,5165 4 | 2020-12-16,0,4817 5 | 2020-12-17,0,4386 6 | 2020-12-18,0,4342 7 | 2020-12-19,0,2675 8 | 2020-12-20,0,1954 9 | 2020-12-21,0,5626 10 | 2020-12-22,0,4601 11 | 2020-12-23,0,4471 12 | 2020-12-24,38,3009 13 | 2020-12-25,0,1721 14 | 2020-12-26,54,2301 15 | 2020-12-27,0,2114 16 | 2020-12-28,41,4990 17 | 2020-12-29,74,4386 18 | 2020-12-30,64,4146 19 | 2020-12-31,48,3006 20 | 2021-01-01,0,1679 21 | 2021-01-02,36,2682 22 | 2021-01-03,14,2202 23 | 2021-01-04,102,5175 24 | 2021-01-05,229,3935 25 | 2021-01-06,64,3284 26 | 2021-01-07,102,3073 27 | 2021-01-08,119,2930 28 | 2021-01-09,170,1512 29 | 2021-01-10,86,1207 30 | 2021-01-11,222,3237 31 | 2021-01-12,86,2521 32 | 2021-01-13,83,2378 33 | 2021-01-14,115,2123 34 | 2021-01-15,190,1968 35 | 2021-01-16,63,1274 36 | 2021-01-17,70,822 37 | 2021-01-18,92,2854 38 | 2021-01-19,178,2152 39 | 2021-01-20,197,2082 40 | 2021-01-21,176,1879 41 | 2021-01-22,134,1903 42 | 2021-01-23,190,908 43 | 2021-01-24,92,640 44 | 2021-01-25,311,2178 45 | 2021-01-26,273,1565 46 | 2021-01-27,279,1591 47 | 2021-01-28,395,1384 48 | 2021-01-29,317,1448 49 | 2021-01-30,196,823 50 | 2021-01-31,111,627 51 | 2021-02-01,580,1582 52 | 2021-02-02,404,1246 53 | 2021-02-03,525,1204 54 | 2021-02-04,243,1200 55 | 2021-02-05,509,997 56 | 2021-02-06,174,713 57 | 2021-02-07,260,413 58 | 2021-02-08,488,1259 59 | 2021-02-09,432,915 60 | 2021-02-10,628,628 61 | 2021-02-11,536,636 62 | 2021-02-12,501,630 63 | 2021-02-13,323,395 64 | 2021-02-14,144,339 65 | 2021-02-15,494,812 66 | 2021-02-16,478,661 67 | 2021-02-17,567,648 68 | 2021-02-18,335,670 69 | 2021-02-19,540,555 70 | 2021-02-20,427,265 71 | 2021-02-21,444,81 72 | 2021-02-22,958,451 73 | 2021-02-23,781,478 74 | 2021-02-24,758,318 75 | 2021-02-25,647,474 76 | 2021-02-26,526,556 77 | 2021-02-27,389,334 78 | 2021-02-28,547,0 79 | 2021-03-01,984,435 80 | 2021-03-02,956,273 81 | 2021-03-03,1049,191 82 | 2021-03-04,850,212 83 | 2021-03-05,982,295 84 | 2021-03-06,583,182 85 | 2021-03-07,582,0 86 | 2021-03-08,1452,250 87 | 2021-03-09,1217,170 88 | 2021-03-10,1078,308 89 | 2021-03-11,1074,265 90 | 2021-03-12,1104,237 91 | 2021-03-13,850,71 92 | 2021-03-14,611,93 93 | 2021-03-15,1752,168 94 | 2021-03-16,1504,146 95 | 2021-03-17,1700,126 96 | 2021-03-18,1524,121 97 | 2021-03-19,1402,142 98 | 2021-03-20,1048,61 99 | 2021-03-21,729,58 100 | 2021-03-22,2130,132 101 | 2021-03-23,1858,135 102 | 2021-03-24,1754,175 103 | 2021-03-25,2053,86 104 | 2021-03-26,1891,106 105 | 2021-03-27,1208,0 106 | 2021-03-29,2205,324 107 | -------------------------------------------------------------------------------- /code/Re/data/estimated_case_numbers_viollier_Ostschweiz.csv: -------------------------------------------------------------------------------- 1 | date,b117,original 2 | 2020-12-14,0.0,1225.0 3 | 2020-12-15,0.0,883.0 4 | 2020-12-16,0.0,834.0 5 | 2020-12-17,0.0,746.0 6 | 2020-12-18,0.0,801.0 7 | 2020-12-19,0.0,307.0 8 | 2020-12-21,0.0,1114.0 9 | 2020-12-22,0.0,802.0 10 | 2020-12-24,0.0,377.0 11 | 2020-12-25,0.0,182.0 12 | 2020-12-26,0.0,258.0 13 | 2020-12-27,0.0,237.0 14 | 2020-12-28,0.0,976.0 15 | 2020-12-29,0.0,734.0 16 | 2020-12-30,0.0,624.0 17 | 2020-12-31,24.0,386.0 18 | 2021-01-01,0.0,172.0 19 | 2021-01-02,0.0,349.0 20 | 2021-01-03,0.0,245.0 21 | 2021-01-04,0.0,1023.0 22 | 2021-01-05,0.0,712.0 23 | 2021-01-06,0.0,546.0 24 | 2021-01-07,26.0,439.0 25 | 2021-01-08,0.0,512.0 26 | 2021-01-09,0.0,153.0 27 | 2021-01-10,0.0,111.0 28 | 2021-01-11,65.0,516.0 29 | 2021-01-12,0.0,374.0 30 | 2021-01-13,0.0,388.0 31 | 2021-01-14,0.0,289.0 32 | 2021-01-15,17.0,264.0 33 | 2021-01-16,0.0,159.0 34 | 2021-01-17,48.0,0.0 35 | 2021-01-18,0.0,544.0 36 | 2021-01-19,51.0,288.0 37 | 2021-01-20,0.0,328.0 38 | 2021-01-21,0.0,283.0 39 | 2021-01-22,35.0,259.0 40 | 2021-01-23,34.0,80.0 41 | 2021-01-24,0.0,72.0 42 | 2021-01-25,108.0,349.0 43 | 2021-01-26,31.0,220.0 44 | 2021-01-27,0.0,243.0 45 | 2021-01-28,0.0,210.0 46 | 2021-01-29,0.0,300.0 47 | 2021-01-30,53.0,87.0 48 | 2021-01-31,8.0,54.0 49 | 2021-02-01,85.0,235.0 50 | 2021-02-02,38.0,150.0 51 | 2021-02-03,229.0,0.0 52 | 2021-02-04,0.0,167.0 53 | 2021-02-05,0.0,170.0 54 | 2021-02-06,17.0,70.0 55 | 2021-02-07,24.0,24.0 56 | 2021-02-08,54.0,189.0 57 | 2021-02-09,66.0,99.0 58 | 2021-02-10,101.0,51.0 59 | 2021-02-11,0.0,116.0 60 | 2021-02-12,39.0,77.0 61 | 2021-02-13,18.0,49.0 62 | 2021-02-14,40.0,0.0 63 | 2021-02-15,94.0,117.0 64 | 2021-02-16,91.0,45.0 65 | 2021-02-17,43.0,98.0 66 | 2021-02-18,24.0,86.0 67 | 2021-02-19,59.0,59.0 68 | 2021-02-20,54.0,7.0 69 | 2021-02-21,42.0,0.0 70 | 2021-02-22,147.0,37.0 71 | 2021-02-23,48.0,96.0 72 | 2021-02-24,119.0,0.0 73 | 2021-02-26,119.0,0.0 74 | 2021-02-28,34.0,0.0 75 | 2021-03-01,37.0,148.0 76 | 2021-03-02,104.0,35.0 77 | 2021-03-03,150.0,0.0 78 | 2021-03-04,117.0,0.0 79 | 2021-03-05,148.0,0.0 80 | 2021-03-06,80.0,0.0 81 | 2021-03-08,199.0,40.0 82 | 2021-03-09,162.0,0.0 83 | 2021-03-10,81.0,54.0 84 | 2021-03-11,129.0,13.0 85 | 2021-03-12,147.0,0.0 86 | 2021-03-13,71.0,0.0 87 | 2021-03-14,55.0,0.0 88 | 2021-03-15,192.0,24.0 89 | 2021-03-16,180.0,0.0 90 | 2021-03-17,168.0,0.0 91 | 2021-03-18,199.0,0.0 92 | 2021-03-19,173.0,0.0 93 | 2021-03-20,70.0,0.0 94 | 2021-03-21,61.0,0.0 95 | 2021-03-22,310.0,0.0 96 | 2021-03-23,228.0,0.0 97 | 2021-03-24,251.0,0.0 98 | 2021-03-25,230.0,0.0 99 | 2021-03-26,231.0,0.0 100 | 2021-03-27,, 101 | -------------------------------------------------------------------------------- /code/Re/data/estimated_case_numbers_viollier_Lake Geneva region.csv: -------------------------------------------------------------------------------- 1 | date,b117,original 2 | 2020-12-14,0.0,639.0 3 | 2020-12-15,0.0,603.0 4 | 2020-12-16,0.0,539.0 5 | 2020-12-17,0.0,484.0 6 | 2020-12-18,0.0,524.0 7 | 2020-12-21,0.0,608.0 8 | 2020-12-22,0.0,544.0 9 | 2020-12-24,0.0,435.0 10 | 2020-12-25,0.0,210.0 11 | 2020-12-26,, 12 | 2020-12-27,0.0,363.0 13 | 2020-12-28,0.0,680.0 14 | 2020-12-29,0.0,641.0 15 | 2020-12-30,0.0,614.0 16 | 2020-12-31,0.0,483.0 17 | 2021-01-01,0.0,262.0 18 | 2021-01-02,168.0,336.0 19 | 2021-01-04,136.0,681.0 20 | 2021-01-05,41.0,651.0 21 | 2021-01-06,30.0,597.0 22 | 2021-01-07,0.0,598.0 23 | 2021-01-08,0.0,518.0 24 | 2021-01-09,0.0,327.0 25 | 2021-01-11,54.0,626.0 26 | 2021-01-12,0.0,484.0 27 | 2021-01-13,40.0,479.0 28 | 2021-01-14,37.0,439.0 29 | 2021-01-15,113.0,394.0 30 | 2021-01-16,170.0,170.0 31 | 2021-01-17,56.0,170.0 32 | 2021-01-18,41.0,568.0 33 | 2021-01-19,23.0,478.0 34 | 2021-01-20,26.0,522.0 35 | 2021-01-21,0.0,480.0 36 | 2021-01-22,52.0,418.0 37 | 2021-01-23,0.0,279.0 38 | 2021-01-24,149.0,74.0 39 | 2021-01-25,153.0,437.0 40 | 2021-01-26,142.0,285.0 41 | 2021-01-27,158.0,292.0 42 | 2021-01-28,0.0,496.0 43 | 2021-01-29,260.0,208.0 44 | 2021-01-30,226.0,75.0 45 | 2021-01-31,0.0,236.0 46 | 2021-02-01,282.0,250.0 47 | 2021-02-02,157.0,315.0 48 | 2021-02-03,207.0,330.0 49 | 2021-02-04,257.0,171.0 50 | 2021-02-05,213.0,237.0 51 | 2021-02-06,258.0,0.0 52 | 2021-02-07,193.0,0.0 53 | 2021-02-08,154.0,308.0 54 | 2021-02-09,264.0,118.0 55 | 2021-02-10,125.0,251.0 56 | 2021-02-11,253.0,95.0 57 | 2021-02-12,212.0,127.0 58 | 2021-02-13,185.0,56.0 59 | 2021-02-14,86.0,86.0 60 | 2021-02-15,287.0,82.0 61 | 2021-02-16,245.0,122.0 62 | 2021-02-17,236.0,95.0 63 | 2021-02-18,219.0,73.0 64 | 2021-02-19,345.0,0.0 65 | 2021-02-20,238.0,0.0 66 | 2021-02-21,199.0,0.0 67 | 2021-02-22,421.0,42.0 68 | 2021-02-23,300.0,100.0 69 | 2021-02-24,312.0,0.0 70 | 2021-02-25,278.0,70.0 71 | 2021-02-26,303.0,0.0 72 | 2021-02-27,224.0,0.0 73 | 2021-03-01,385.0,70.0 74 | 2021-03-02,325.0,20.0 75 | 2021-03-03,290.0,21.0 76 | 2021-03-04,299.0,0.0 77 | 2021-03-05,350.0,39.0 78 | 2021-03-06,151.0,76.0 79 | 2021-03-07,, 80 | 2021-03-08,431.0,25.0 81 | 2021-03-09,239.0,103.0 82 | 2021-03-10,346.0,0.0 83 | 2021-03-11,376.0,0.0 84 | 2021-03-12,363.0,33.0 85 | 2021-03-13,250.0,0.0 86 | 2021-03-14,194.0,0.0 87 | 2021-03-15,397.0,50.0 88 | 2021-03-16,416.0,28.0 89 | 2021-03-17,493.0,0.0 90 | 2021-03-18,442.0,0.0 91 | 2021-03-19,435.0,0.0 92 | 2021-03-20,269.0,30.0 93 | 2021-03-21,235.0,0.0 94 | 2021-03-22,537.0,0.0 95 | 2021-03-23,477.0,0.0 96 | 2021-03-24,483.0,0.0 97 | 2021-03-25,526.0,58.0 98 | 2021-03-26,441.0,55.0 99 | 2021-03-29,637.0,0.0 100 | -------------------------------------------------------------------------------- /code/Re/data/estimated_case_numbers_risch.csv: -------------------------------------------------------------------------------- 1 | date,b117,original 2 | 2020-12-14,0,5915 3 | 2020-12-15,0,5165 4 | 2020-12-16,0,4817 5 | 2020-12-17,0,4386 6 | 2020-12-18,0,4342 7 | 2020-12-19,18,2657 8 | 2020-12-20,0,1954 9 | 2020-12-21,32,5594 10 | 2020-12-22,0,4601 11 | 2020-12-23,0,4471 12 | 2020-12-24,15,3032 13 | 2020-12-25,0,1721 14 | 2020-12-26,0,2355 15 | 2020-12-27,0,2114 16 | 2020-12-28,27,5004 17 | 2020-12-29,28,4432 18 | 2020-12-30,15,4195 19 | 2020-12-31,0,3054 20 | 2021-01-01,0,1679 21 | 2021-01-02,25,2693 22 | 2021-01-03,34,2182 23 | 2021-01-04,110,5167 24 | 2021-01-05,26,4138 25 | 2021-01-06,32,3316 26 | 2021-01-07,16,3159 27 | 2021-01-08,47,3002 28 | 2021-01-09,35,1647 29 | 2021-01-10,0,1293 30 | 2021-01-11,141,3318 31 | 2021-01-12,100,2507 32 | 2021-01-13,115,2346 33 | 2021-01-14,87,2151 34 | 2021-01-15,122,2037 35 | 2021-01-16,41,1296 36 | 2021-01-17,127,765 37 | 2021-01-18,268,2678 38 | 2021-01-19,154,2176 39 | 2021-01-20,273,2006 40 | 2021-01-21,230,1825 41 | 2021-01-22,260,1777 42 | 2021-01-23,120,978 43 | 2021-01-24,144,588 44 | 2021-01-25,356,2133 45 | 2021-01-26,268,1570 46 | 2021-01-27,300,1570 47 | 2021-01-28,480,1299 48 | 2021-01-29,381,1384 49 | 2021-01-30,93,926 50 | 2021-01-31,115,623 51 | 2021-02-01,491,1671 52 | 2021-02-02,270,1380 53 | 2021-02-03,331,1398 54 | 2021-02-04,418,1025 55 | 2021-02-05,446,1060 56 | 2021-02-06,288,599 57 | 2021-02-07,336,336 58 | 2021-02-08,540,1207 59 | 2021-02-09,298,1049 60 | 2021-02-10,286,971 61 | 2021-02-11,283,889 62 | 2021-02-12,321,810 63 | 2021-02-13,214,504 64 | 2021-02-14,189,294 65 | 2021-02-15,522,784 66 | 2021-02-16,417,722 67 | 2021-02-17,538,677 68 | 2021-02-18,390,615 69 | 2021-02-19,667,428 70 | 2021-02-20,461,231 71 | 2021-02-21,328,197 72 | 2021-02-22,761,648 73 | 2021-02-23,608,651 74 | 2021-02-24,617,459 75 | 2021-02-25,480,641 76 | 2021-02-26,673,409 77 | 2021-02-27,420,303 78 | 2021-02-28,497,50 79 | 2021-03-01,1058,361 80 | 2021-03-02,734,495 81 | 2021-03-03,806,434 82 | 2021-03-04,586,476 83 | 2021-03-05,753,524 84 | 2021-03-06,525,240 85 | 2021-03-07,509,73 86 | 2021-03-08,1064,638 87 | 2021-03-09,1094,293 88 | 2021-03-10,975,411 89 | 2021-03-11,839,500 90 | 2021-03-12,852,489 91 | 2021-03-13,677,244 92 | 2021-03-14,553,151 93 | 2021-03-15,1664,256 94 | 2021-03-16,1503,147 95 | 2021-03-17,1643,183 96 | 2021-03-18,1470,175 97 | 2021-03-19,1474,70 98 | 2021-03-20,1109,0 99 | 2021-03-21,735,52 100 | 2021-03-22,2086,176 101 | 2021-03-23,1881,112 102 | 2021-03-24,1839,90 103 | 2021-03-25,1852,287 104 | 2021-03-26,1848,149 105 | 2021-03-27,1071,137 106 | 2021-03-28,909,87 107 | 2021-03-29,2284,245 108 | 2021-03-30,1911,182 109 | 2021-03-31,1998,133 110 | 2021-04-01,1983,0 111 | 2021-04-02,1129,69 112 | 2021-04-03,1269,47 113 | 2021-04-04,1019,0 114 | -------------------------------------------------------------------------------- /code/Re/data/estimated_case_numbers_viollier_Grossregion Zurich.csv: -------------------------------------------------------------------------------- 1 | date,b117,original 2 | 2020-12-14,0.0,1033.0 3 | 2020-12-15,0.0,1022.0 4 | 2020-12-16,0.0,1020.0 5 | 2020-12-17,0.0,894.0 6 | 2020-12-18,0.0,861.0 7 | 2020-12-19,0.0,630.0 8 | 2020-12-20,0.0,488.0 9 | 2020-12-21,0.0,1068.0 10 | 2020-12-22,0.0,933.0 11 | 2020-12-23,0.0,945.0 12 | 2020-12-24,0.0,645.0 13 | 2020-12-25,0.0,451.0 14 | 2020-12-26,0.0,476.0 15 | 2020-12-27,0.0,485.0 16 | 2020-12-28,54.0,897.0 17 | 2020-12-29,16.0,872.0 18 | 2020-12-30,0.0,810.0 19 | 2020-12-31,0.0,606.0 20 | 2021-01-01,0.0,425.0 21 | 2021-01-02,0.0,529.0 22 | 2021-01-03,0.0,485.0 23 | 2021-01-04,19.0,888.0 24 | 2021-01-05,23.0,749.0 25 | 2021-01-06,0.0,618.0 26 | 2021-01-07,21.0,536.0 27 | 2021-01-08,10.0,567.0 28 | 2021-01-09,0.0,313.0 29 | 2021-01-10,0.0,267.0 30 | 2021-01-11,29.0,531.0 31 | 2021-01-12,38.0,460.0 32 | 2021-01-13,0.0,398.0 33 | 2021-01-14,28.0,338.0 34 | 2021-01-15,14.0,346.0 35 | 2021-01-16,0.0,229.0 36 | 2021-01-17,0.0,172.0 37 | 2021-01-18,10.0,466.0 38 | 2021-01-19,26.0,389.0 39 | 2021-01-20,46.0,360.0 40 | 2021-01-21,17.0,381.0 41 | 2021-01-22,27.0,346.0 42 | 2021-01-23,24.0,192.0 43 | 2021-01-24,0.0,121.0 44 | 2021-01-25,8.0,374.0 45 | 2021-01-26,55.0,285.0 46 | 2021-01-27,29.0,335.0 47 | 2021-01-28,24.0,269.0 48 | 2021-01-29,0.0,282.0 49 | 2021-01-30,20.0,159.0 50 | 2021-01-31,15.0,95.0 51 | 2021-02-01,69.0,258.0 52 | 2021-02-02,41.0,241.0 53 | 2021-02-03,56.0,207.0 54 | 2021-02-04,63.0,173.0 55 | 2021-02-05,34.0,196.0 56 | 2021-02-06,16.0,143.0 57 | 2021-02-07,0.0,125.0 58 | 2021-02-08,91.0,199.0 59 | 2021-02-09,14.0,210.0 60 | 2021-02-10,116.0,96.0 61 | 2021-02-11,73.0,98.0 62 | 2021-02-12,72.0,109.0 63 | 2021-02-13,56.0,56.0 64 | 2021-02-14,24.0,49.0 65 | 2021-02-15,0.0,168.0 66 | 2021-02-16,87.0,87.0 67 | 2021-02-17,36.0,179.0 68 | 2021-02-18,56.0,112.0 69 | 2021-02-19,77.0,68.0 70 | 2021-02-20,24.0,96.0 71 | 2021-02-21,66.0,0.0 72 | 2021-02-22,136.0,45.0 73 | 2021-02-23,130.0,52.0 74 | 2021-02-24,100.0,57.0 75 | 2021-02-25,0.0,138.0 76 | 2021-02-26,134.0,0.0 77 | 2021-02-27,92.0,0.0 78 | 2021-03-01,129.0,52.0 79 | 2021-03-02,187.0,0.0 80 | 2021-03-03,161.0,44.0 81 | 2021-03-04,141.0,35.0 82 | 2021-03-05,119.0,89.0 83 | 2021-03-06,122.0,0.0 84 | 2021-03-08,165.0,99.0 85 | 2021-03-09,192.0,30.0 86 | 2021-03-10,141.0,91.0 87 | 2021-03-11,161.0,44.0 88 | 2021-03-12,189.0,21.0 89 | 2021-03-13,175.0,0.0 90 | 2021-03-14,138.0,0.0 91 | 2021-03-15,321.0,36.0 92 | 2021-03-16,286.0,0.0 93 | 2021-03-17,273.0,30.0 94 | 2021-03-18,223.0,45.0 95 | 2021-03-19,257.0,29.0 96 | 2021-03-20,194.0,0.0 97 | 2021-03-21,152.0,0.0 98 | 2021-03-22,340.0,60.0 99 | 2021-03-23,348.0,23.0 100 | 2021-03-24,312.0,35.0 101 | 2021-03-25,355.0,21.0 102 | 2021-03-26,404.0,0.0 103 | 2021-03-27,, 104 | 2021-03-29,469.0,0.0 105 | -------------------------------------------------------------------------------- /code/Re/data/estimated_case_numbers_viollier_Espace Mittelland.csv: -------------------------------------------------------------------------------- 1 | date,b117,original 2 | 2020-12-14,0.0,1174.0 3 | 2020-12-15,0.0,1027.0 4 | 2020-12-16,0.0,917.0 5 | 2020-12-17,0.0,882.0 6 | 2020-12-18,0.0,779.0 7 | 2020-12-19,0.0,580.0 8 | 2020-12-20,0.0,394.0 9 | 2020-12-21,0.0,1026.0 10 | 2020-12-22,0.0,858.0 11 | 2020-12-23,0.0,817.0 12 | 2020-12-24,0.0,576.0 13 | 2020-12-25,0.0,372.0 14 | 2020-12-26,24.0,419.0 15 | 2020-12-27,0.0,409.0 16 | 2020-12-28,0.0,906.0 17 | 2020-12-29,30.0,767.0 18 | 2020-12-30,60.0,762.0 19 | 2020-12-31,15.0,597.0 20 | 2021-01-01,0.0,302.0 21 | 2021-01-02,9.0,525.0 22 | 2021-01-03,6.0,436.0 23 | 2021-01-04,19.0,959.0 24 | 2021-01-05,100.0,691.0 25 | 2021-01-06,33.0,593.0 26 | 2021-01-07,22.0,616.0 27 | 2021-01-08,50.0,552.0 28 | 2021-01-09,68.0,319.0 29 | 2021-01-10,33.0,234.0 30 | 2021-01-11,71.0,554.0 31 | 2021-01-12,19.0,493.0 32 | 2021-01-13,14.0,478.0 33 | 2021-01-14,73.0,414.0 34 | 2021-01-15,55.0,353.0 35 | 2021-01-16,28.0,234.0 36 | 2021-01-17,15.0,194.0 37 | 2021-01-18,15.0,515.0 38 | 2021-01-19,54.0,382.0 39 | 2021-01-20,36.0,364.0 40 | 2021-01-21,51.0,333.0 41 | 2021-01-22,31.0,347.0 42 | 2021-01-23,49.0,157.0 43 | 2021-01-24,24.0,162.0 44 | 2021-01-25,94.0,376.0 45 | 2021-01-26,64.0,318.0 46 | 2021-01-27,112.0,288.0 47 | 2021-01-28,117.0,249.0 48 | 2021-01-29,73.0,254.0 49 | 2021-01-30,16.0,186.0 50 | 2021-01-31,24.0,144.0 51 | 2021-02-01,119.0,334.0 52 | 2021-02-02,105.0,223.0 53 | 2021-02-03,143.0,171.0 54 | 2021-02-04,42.0,218.0 55 | 2021-02-05,84.0,209.0 56 | 2021-02-06,41.0,139.0 57 | 2021-02-07,26.0,107.0 58 | 2021-02-08,178.0,178.0 59 | 2021-02-09,108.0,140.0 60 | 2021-02-10,123.0,123.0 61 | 2021-02-11,203.0,95.0 62 | 2021-02-12,102.0,117.0 63 | 2021-02-13,56.0,105.0 64 | 2021-02-14,19.0,82.0 65 | 2021-02-15,66.0,213.0 66 | 2021-02-16,97.0,135.0 67 | 2021-02-17,172.0,89.0 68 | 2021-02-18,95.0,152.0 69 | 2021-02-19,112.0,103.0 70 | 2021-02-20,58.0,78.0 71 | 2021-02-21,96.0,13.0 72 | 2021-02-22,171.0,118.0 73 | 2021-02-23,123.0,138.0 74 | 2021-02-24,155.0,83.0 75 | 2021-02-25,146.0,86.0 76 | 2021-02-26,88.0,176.0 77 | 2021-02-27,0.0,182.0 78 | 2021-03-01,192.0,64.0 79 | 2021-03-02,174.0,93.0 80 | 2021-03-03,213.0,52.0 81 | 2021-03-04,158.0,39.0 82 | 2021-03-05,208.0,35.0 83 | 2021-03-06,0.0,141.0 84 | 2021-03-07,107.0,0.0 85 | 2021-03-08,232.0,46.0 86 | 2021-03-09,212.0,28.0 87 | 2021-03-10,201.0,57.0 88 | 2021-03-11,209.0,20.0 89 | 2021-03-12,154.0,68.0 90 | 2021-03-13,134.0,18.0 91 | 2021-03-14,78.0,28.0 92 | 2021-03-15,309.0,31.0 93 | 2021-03-16,225.0,32.0 94 | 2021-03-17,323.0,32.0 95 | 2021-03-18,219.0,63.0 96 | 2021-03-19,229.0,37.0 97 | 2021-03-20,192.0,15.0 98 | 2021-03-21,97.0,13.0 99 | 2021-03-22,397.0,18.0 100 | 2021-03-23,322.0,44.0 101 | 2021-03-24,308.0,23.0 102 | 2021-03-25,378.0,0.0 103 | 2021-03-26,337.0,0.0 104 | 2021-03-27,, 105 | 2021-03-29,377.0,51.0 106 | -------------------------------------------------------------------------------- /code/utils.py: -------------------------------------------------------------------------------- 1 | import numpy as np 2 | from scipy.stats import norm 3 | import statsmodels.api as sm 4 | 5 | from base_classes import GrowthNumbers, ConfidenceInterval 6 | 7 | 8 | def statsmodel_fit( 9 | alpha, 10 | t, 11 | k, 12 | n, 13 | generation_time, 14 | reproduction_number 15 | ) -> GrowthNumbers: 16 | # adapt the data to the required format 17 | x = np.array([]) 18 | y = np.array([]) 19 | for i in range(0, len(t)): 20 | y = np.concatenate( 21 | (np.concatenate((y, np.array([True] * k[i]))), np.array([False] * (n[i] - k[i])))) 22 | x = np.concatenate((x, np.array([t[i]] * n[i]))) 23 | # add a column of 1's to be multiplied by the intercept 24 | X = sm.add_constant(x) 25 | 26 | # estimate the model 27 | model = sm.Logit(y, X).fit(disp=0) 28 | 29 | # The following cov matrix returned by the method is the same as invFI 30 | cov = model.cov_params() 31 | 32 | # We transform these two parameters for our parameterization of interest 33 | # and use a delta method to get the correct variance 34 | 35 | # take the MLE of the parameters as the functions of the MLE of beta0, beta 36 | beta0, beta1 = model.params 37 | t0, a, fd, fc = -beta0 / beta1, \ 38 | beta1, \ 39 | np.exp(beta1 * generation_time) - 1, \ 40 | beta1 * generation_time / reproduction_number 41 | 42 | # Build the Jacobian matrix with first derivatives of, in this order, t0, a, fd, fc 43 | Jac = np.array([-1 / beta1, beta0 / (beta1 ** 2), \ 44 | 0, 1, \ 45 | 0, generation_time * np.exp(beta1 * generation_time), \ 46 | 0, generation_time / reproduction_number])\ 47 | .reshape(4, 2) 48 | 49 | # New Sigma is obtained through the delta method 50 | Sigma = np.dot(np.dot(Jac, cov), Jac.T) 51 | 52 | # And now we can look for the CI with the level of interest 53 | q = norm.ppf(1 - ((1 - alpha) / 2)) 54 | delta_t0 = np.sqrt(Sigma[0, 0]) * q 55 | delta_a = np.sqrt(Sigma[1, 1]) * q 56 | delta_fd = np.sqrt(Sigma[2, 2]) * q 57 | delta_fc = np.sqrt(Sigma[3, 3]) * q 58 | 59 | return GrowthNumbers( 60 | alpha, generation_time, reproduction_number, 61 | a, ConfidenceInterval(a - delta_a, a + delta_a), 62 | t0, ConfidenceInterval(t0 - delta_t0, t0 + delta_t0), 63 | fd, ConfidenceInterval(fd - delta_fd, fd + delta_fd), 64 | fc, ConfidenceInterval(fc - delta_fc, fc + delta_fc), 65 | model 66 | ) 67 | 68 | 69 | def statsmodel_predict(model, t, alpha): 70 | X = sm.add_constant(t) 71 | proba = model.predict(X) 72 | cov = model.cov_params() 73 | 74 | # we need to estimate confidence interval for predicted probabilities using the delta method as well 75 | 76 | # the proportion is a function of the parameters 77 | # applied to the MLE, it is simply "proba". 78 | # and the Jacobian matrix taken at the different time points turns out to be 79 | D = (X.T * proba * (1 - proba)).T 80 | 81 | # We thus get the following standard errors 82 | std_errors = np.array([np.sqrt(np.dot(np.dot(d, cov), d)) for d in D]) 83 | 84 | # And it is Gaussian, so we take the desired quantile 85 | q = norm.ppf(1 - ((1 - alpha) / 2)) 86 | lower = np.maximum(0, np.minimum(1, proba - std_errors * q)) 87 | upper = np.maximum(0, np.minimum(1, proba + std_errors * q)) 88 | return proba, lower, upper 89 | -------------------------------------------------------------------------------- /data/data_variants_per_day_hug_geneva.csv: -------------------------------------------------------------------------------- 1 | date,region,sequenced,b117 2 | 2020-12-23,Lake Geneva region,1,0 3 | 2020-12-24,Lake Geneva region,13,0 4 | 2020-12-25,Lake Geneva region,10,0 5 | 2020-12-26,Lake Geneva region,8,3 6 | 2020-12-27,Lake Geneva region,2,0 7 | 2020-12-28,Lake Geneva region,18,1 8 | 2020-12-29,Lake Geneva region,5,0 9 | 2020-12-30,Lake Geneva region,1,0 10 | 2020-12-31,Lake Geneva region,23,2 11 | 2021-01-01,Lake Geneva region,23,1 12 | 2021-01-02,Lake Geneva region,19,0 13 | 2021-01-06,Lake Geneva region,1,1 14 | 2021-01-08,Lake Geneva region,6,2 15 | 2021-01-09,Lake Geneva region,31,2 16 | 2021-01-10,Lake Geneva region,40,7 17 | 2021-01-11,Lake Geneva region,37,6 18 | 2021-01-12,Lake Geneva region,25,8 19 | 2021-01-13,Lake Geneva region,47,5 20 | 2021-01-14,Lake Geneva region,51,4 21 | 2021-01-15,Lake Geneva region,61,9 22 | 2021-01-16,Lake Geneva region,47,10 23 | 2021-01-17,Lake Geneva region,32,9 24 | 2021-01-18,Lake Geneva region,73,18 25 | 2021-01-19,Lake Geneva region,54,12 26 | 2021-01-20,Lake Geneva region,57,8 27 | 2021-01-21,Lake Geneva region,41,4 28 | 2021-01-22,Lake Geneva region,15,7 29 | 2021-01-23,Lake Geneva region,35,8 30 | 2021-01-24,Lake Geneva region,45,14 31 | 2021-01-25,Lake Geneva region,41,10 32 | 2021-01-26,Lake Geneva region,33,14 33 | 2021-01-27,Lake Geneva region,52,23 34 | 2021-01-28,Lake Geneva region,45,19 35 | 2021-01-29,Lake Geneva region,59,24 36 | 2021-01-30,Lake Geneva region,54,24 37 | 2021-01-31,Lake Geneva region,39,19 38 | 2021-02-01,Lake Geneva region,25,11 39 | 2021-02-02,Lake Geneva region,21,13 40 | 2021-02-03,Lake Geneva region,23,17 41 | 2021-02-04,Lake Geneva region,45,26 42 | 2021-02-05,Lake Geneva region,51,32 43 | 2021-02-06,Lake Geneva region,57,38 44 | 2021-02-07,Lake Geneva region,14,5 45 | 2021-02-08,Lake Geneva region,20,14 46 | 2021-02-09,Lake Geneva region,32,24 47 | 2021-02-10,Lake Geneva region,22,17 48 | 2021-02-11,Lake Geneva region,40,29 49 | 2021-02-12,Lake Geneva region,25,19 50 | 2021-02-13,Lake Geneva region,39,26 51 | 2021-02-14,Lake Geneva region,28,14 52 | 2021-02-15,Lake Geneva region,24,19 53 | 2021-02-16,Lake Geneva region,37,23 54 | 2021-02-17,Lake Geneva region,24,16 55 | 2021-02-18,Lake Geneva region,18,11 56 | 2021-02-19,Lake Geneva region,22,16 57 | 2021-02-20,Lake Geneva region,29,21 58 | 2021-02-21,Lake Geneva region,50,41 59 | 2021-02-22,Lake Geneva region,29,23 60 | 2021-02-23,Lake Geneva region,27,21 61 | 2021-02-24,Lake Geneva region,33,25 62 | 2021-02-25,Lake Geneva region,27,20 63 | 2021-02-26,Lake Geneva region,5,5 64 | 2021-02-27,Lake Geneva region,36,33 65 | 2021-02-28,Lake Geneva region,35,32 66 | 2021-03-01,Lake Geneva region,32,30 67 | 2021-03-02,Lake Geneva region,20,18 68 | 2021-03-03,Lake Geneva region,25,22 69 | 2021-03-04,Lake Geneva region,28,26 70 | 2021-03-05,Lake Geneva region,27,26 71 | 2021-03-06,Lake Geneva region,42,39 72 | 2021-03-07,Lake Geneva region,38,34 73 | 2021-03-08,Lake Geneva region,28,28 74 | 2021-03-09,Lake Geneva region,31,29 75 | 2021-03-10,Lake Geneva region,32,29 76 | 2021-03-11,Lake Geneva region,26,23 77 | 2021-03-12,Lake Geneva region,26,24 78 | 2021-03-13,Lake Geneva region,46,38 79 | 2021-03-14,Lake Geneva region,44,42 80 | 2021-03-15,Lake Geneva region,34,34 81 | 2021-03-16,Lake Geneva region,39,34 82 | 2021-03-17,Lake Geneva region,44,40 83 | 2021-03-18,Lake Geneva region,19,18 84 | 2021-03-19,Lake Geneva region,26,23 85 | 2021-03-20,Lake Geneva region,39,35 86 | 2021-03-21,Lake Geneva region,29,26 87 | 2021-03-22,Lake Geneva region,34,32 88 | 2021-03-23,Lake Geneva region,29,25 89 | 2021-03-24,Lake Geneva region,37,35 90 | 2021-03-25,Lake Geneva region,34,34 91 | -------------------------------------------------------------------------------- /code/Re/Re_functions.R: -------------------------------------------------------------------------------- 1 | ########################################################### 2 | # (Helper) Functions to estimate Re for B117 and non-B117 3 | # Author: JS Huisman 4 | ########################################################### 5 | 6 | getGammaParams <- function(meanParam, sdParam){ 7 | shapeParam <- meanParam^2 / (sdParam^2) 8 | scaleParam <- (sdParam^2) / meanParam 9 | return(list(shape = shapeParam, scale = scaleParam)) 10 | } 11 | 12 | # For citations on these parameters see Huisman et al 13 | getCountParams <- function(obs_type){ 14 | switch(obs_type, 15 | incubation = getGammaParams(5.3, 3.2), 16 | zero = list(shape = 0, scale = 0), 17 | death = getGammaParams(15.0, 6.9), 18 | hospitalisation = getGammaParams(5.1, 4.2), 19 | confirmed = getGammaParams(5.5, 3.8) 20 | ) 21 | } 22 | 23 | # This is for compatibility with the code from shiny-dailyRe 24 | addUselessColumns <- function(df, inc_var = 'original'){ 25 | 26 | observation_df <- df %>% 27 | dplyr::select(date, value = all_of(inc_var)) %>% 28 | mutate(data_type = inc_var, 29 | source = 'ETH', 30 | region = 'CHE', 31 | variable = 'incidence', 32 | country = 'Switzerland', 33 | date_type = 'report', 34 | local_infection = TRUE) 35 | 36 | return(observation_df) 37 | } 38 | 39 | # Wrapper around code from shiny-dailyRe 40 | deconvolveIncidence <- function(df, incidence_var = 'original', 41 | IncubationParams, OnsetToCountParams, 42 | smooth_param = TRUE, n_boot = 100){ 43 | infection_df <- addUselessColumns(df, inc_var = incidence_var) 44 | 45 | constant_delay_distributions <- list("Cases" = get_vector_constant_waiting_time_distr( 46 | IncubationParams$shape, IncubationParams$scale, 47 | OnsetToCountParams$shape, OnsetToCountParams$scale), 48 | "Symptoms" = get_vector_constant_waiting_time_distr( 49 | IncubationParams$shape, IncubationParams$scale, 50 | 0, 0)) 51 | 52 | estimatedInfections <- get_infection_incidence_by_deconvolution( 53 | infection_df, 54 | is_local_cases = T, 55 | constant_delay_distribution = constant_delay_distributions[['Cases']], 56 | constant_delay_distribution_incubation = constant_delay_distributions[["Symptoms"]], 57 | max_iterations = 100, 58 | smooth_incidence = smooth_param, 59 | empirical_delays = tibble(), 60 | n_bootstrap = n_boot, 61 | verbose = FALSE) 62 | 63 | return(estimatedInfections) 64 | } 65 | 66 | # Wrapper around code from shiny-dailyRe 67 | getReBootstrap <- function(deconvoluted_data, 68 | interval_ends = list('CHE' = c("2020-12-21", "2021-01-17", "2021-02-17")), 69 | estimate_types = c("slidingWindow", "step")){ 70 | 71 | all_delays <- lapply(unique(deconvoluted_data$data_type), function(x){ c(Cori = 0)}) 72 | names(all_delays) <- unique(deconvoluted_data$data_type) 73 | 74 | truncations <- list(left = c(Cori = 5), 75 | right = c(Cori = 0)) 76 | 77 | rawReEstimates <- doAllReEstimations( 78 | deconvoluted_data, 79 | slidingWindow = 3, 80 | methods = c("Cori"), 81 | variationTypes = estimate_types, 82 | all_delays, 83 | truncations, 84 | interval_ends = interval_ends 85 | ) 86 | 87 | cleanEstimates <- cleanCountryReEstimate(rawReEstimates, method = 'bootstrap', 88 | rename_types = F, report_sd = T, alpha=0.95) 89 | 90 | return(cleanEstimates) 91 | } 92 | -------------------------------------------------------------------------------- /data/data_variants_per_day_risch.csv: -------------------------------------------------------------------------------- 1 | date,region,sequenced,b117 2 | 2020-12-14,Switzerland,353,0 3 | 2020-12-15,Switzerland,409,0 4 | 2020-12-16,Switzerland,325,0 5 | 2020-12-17,Switzerland,305,0 6 | 2020-12-18,Switzerland,291,0 7 | 2020-12-19,Switzerland,150,1 8 | 2020-12-20,Switzerland,130,0 9 | 2020-12-21,Switzerland,353,2 10 | 2020-12-22,Switzerland,383,0 11 | 2020-12-23,Switzerland,298,0 12 | 2020-12-24,Switzerland,203,1 13 | 2020-12-25,Switzerland,85,0 14 | 2020-12-26,Switzerland,132,0 15 | 2020-12-27,Switzerland,79,0 16 | 2020-12-28,Switzerland,377,2 17 | 2020-12-29,Switzerland,317,2 18 | 2020-12-30,Switzerland,288,1 19 | 2020-12-31,Switzerland,198,0 20 | 2021-01-01,Switzerland,75,0 21 | 2021-01-02,Switzerland,109,1 22 | 2021-01-03,Switzerland,131,2 23 | 2021-01-04,Switzerland,384,8 24 | 2021-01-05,Switzerland,321,2 25 | 2021-01-06,Switzerland,209,2 26 | 2021-01-07,Switzerland,197,1 27 | 2021-01-08,Switzerland,196,3 28 | 2021-01-09,Switzerland,96,2 29 | 2021-01-10,Switzerland,39,0 30 | 2021-01-11,Switzerland,221,9 31 | 2021-01-12,Switzerland,156,6 32 | 2021-01-13,Switzerland,128,6 33 | 2021-01-14,Switzerland,103,4 34 | 2021-01-15,Switzerland,124,7 35 | 2021-01-16,Switzerland,130,4 36 | 2021-01-17,Switzerland,49,7 37 | 2021-01-18,Switzerland,154,14 38 | 2021-01-19,Switzerland,151,10 39 | 2021-01-20,Switzerland,125,15 40 | 2021-01-21,Switzerland,116,13 41 | 2021-01-22,Switzerland,102,13 42 | 2021-01-23,Switzerland,73,8 43 | 2021-01-24,Switzerland,71,14 44 | 2021-01-25,Switzerland,210,30 45 | 2021-01-26,Switzerland,158,23 46 | 2021-01-27,Switzerland,193,31 47 | 2021-01-28,Switzerland,126,34 48 | 2021-01-29,Switzerland,162,35 49 | 2021-01-30,Switzerland,77,7 50 | 2021-01-31,Switzerland,58,9 51 | 2021-02-01,Switzerland,185,42 52 | 2021-02-02,Switzerland,110,18 53 | 2021-02-03,Switzerland,120,23 54 | 2021-02-04,Switzerland,114,33 55 | 2021-02-05,Switzerland,81,24 56 | 2021-02-06,Switzerland,40,13 57 | 2021-02-07,Switzerland,12,6 58 | 2021-02-08,Switzerland,123,38 59 | 2021-02-09,Switzerland,95,21 60 | 2021-02-10,Switzerland,88,20 61 | 2021-02-11,Switzerland,87,21 62 | 2021-02-12,Switzerland,74,21 63 | 2021-02-13,Switzerland,47,14 64 | 2021-02-14,Switzerland,23,9 65 | 2021-02-15,Switzerland,90,36 66 | 2021-02-16,Switzerland,82,30 67 | 2021-02-17,Switzerland,70,31 68 | 2021-02-18,Switzerland,67,26 69 | 2021-02-19,Switzerland,69,42 70 | 2021-02-20,Switzerland,36,24 71 | 2021-02-21,Switzerland,16,10 72 | 2021-02-22,Switzerland,100,54 73 | 2021-02-23,Switzerland,87,42 74 | 2021-02-24,Switzerland,82,47 75 | 2021-02-25,Switzerland,84,36 76 | 2021-02-26,Switzerland,82,51 77 | 2021-02-27,Switzerland,43,25 78 | 2021-02-28,Switzerland,22,20 79 | 2021-03-01,Switzerland,110,82 80 | 2021-03-02,Switzerland,67,40 81 | 2021-03-03,Switzerland,80,52 82 | 2021-03-04,Switzerland,58,32 83 | 2021-03-05,Switzerland,78,46 84 | 2021-03-06,Switzerland,35,24 85 | 2021-03-07,Switzerland,16,14 86 | 2021-03-08,Switzerland,72,45 87 | 2021-03-09,Switzerland,90,71 88 | 2021-03-10,Switzerland,81,57 89 | 2021-03-11,Switzerland,83,52 90 | 2021-03-12,Switzerland,74,47 91 | 2021-03-13,Switzerland,49,36 92 | 2021-03-14,Switzerland,14,11 93 | 2021-03-15,Switzerland,75,65 94 | 2021-03-16,Switzerland,101,92 95 | 2021-03-17,Switzerland,90,81 96 | 2021-03-18,Switzerland,94,84 97 | 2021-03-19,Switzerland,66,63 98 | 2021-03-20,Switzerland,37,37 99 | 2021-03-21,Switzerland,15,14 100 | 2021-03-22,Switzerland,103,95 101 | 2021-03-23,Switzerland,89,84 102 | 2021-03-24,Switzerland,107,102 103 | 2021-03-25,Switzerland,97,84 104 | 2021-03-26,Switzerland,107,99 105 | 2021-03-27,Switzerland,53,47 106 | 2021-03-28,Switzerland,23,21 107 | 2021-03-29,Switzerland,93,84 108 | 2021-03-30,Switzerland,115,105 109 | 2021-03-31,Switzerland,96,90 110 | 2021-04-01,Switzerland,103,103 111 | 2021-04-02,Switzerland,52,49 112 | 2021-04-03,Switzerland,56,54 113 | 2021-04-04,Switzerland,32,32 114 | 115 | -------------------------------------------------------------------------------- /code/Re/estimate_Re_canton.R: -------------------------------------------------------------------------------- 1 | ########################################################### 2 | # Estimating Re for B117 and non-B117 per canton 3 | # Author: JS Huisman 4 | 5 | # In contrast to the other script this one only writes 6 | # values to csv (rather than plotting) 7 | ########################################################### 8 | library(tidyverse) 9 | library(lubridate) 10 | library(viridis) 11 | library(EpiEstim) 12 | 13 | # This code assumes you have cloned the git repository 14 | # https://github.com/covid-19-Re/shiny-dailyRe in the location 15 | # app_dir 16 | app_dir = '' 17 | data_dir = '../data' 18 | plot_dir = '../figures/cantons' 19 | 20 | source(paste0(app_dir,'/app/otherScripts/2_utils_getInfectionIncidence.R')) 21 | source(paste0(app_dir,'/app/otherScripts/3_utils_doReEstimates.R')) 22 | source('Re_functions.R') 23 | 24 | ########################################################### 25 | ## Some functions for readability #### 26 | deconvolve_b117 <- function(data, n_boot = 1000){ 27 | orig_deconv <- deconvolveIncidence(data, incidence_var = 'original', 28 | getCountParams('incubation'), 29 | getCountParams('confirmed'), 30 | smooth_param = TRUE, n_boot = n_boot) 31 | 32 | b117_deconv <- deconvolveIncidence(data, incidence_var = 'b117', 33 | getCountParams('incubation'), 34 | getCountParams('confirmed'), 35 | smooth_param = TRUE, n_boot = n_boot) 36 | 37 | all_deconv <- bind_rows(orig_deconv, b117_deconv) %>% 38 | select(data_type, date, replicate, value) %>% 39 | mutate(data_type = ifelse(data_type == 'infection_b117', 'B117', 'Non-B117')) 40 | 41 | return(list(orig = orig_deconv, 42 | b117 = b117_deconv, 43 | all = all_deconv)) 44 | } 45 | 46 | estimate_Re_b117 <- function(deconv_result, interval_ends, 47 | estimate_types = c("step")){ 48 | orig_Re <- getReBootstrap(deconv_result$orig, 49 | interval_ends = interval_ends, 50 | estimate_types = estimate_types) 51 | b117_Re <- getReBootstrap(deconv_result$b117, interval_ends = interval_ends, 52 | estimate_types = estimate_types) 53 | 54 | all_Re <- bind_rows(orig_Re, b117_Re) %>% 55 | select(date, data_type, estimate_type, median_R_mean, median_R_highHPD, median_R_lowHPD) %>% 56 | mutate(data_type = ifelse(data_type == 'infection_b117', 'B117', 'Non-B117')) 57 | 58 | return(all_Re) 59 | } 60 | ########################################################### 61 | ## General settings #### 62 | start_date = as_date("2021-01-01") 63 | data_end_date = as_date("2021-02-11") 64 | ########################## 65 | ## Read raw Data #### 66 | 67 | data_files <- list.files(path = data_dir, full.names = TRUE) 68 | 69 | Jan_estimates <- data.frame() 70 | for (data_file in data_files){ 71 | raw_data = read_csv(data_file) 72 | data <- raw_data %>% 73 | filter(date <= data_end_date ) %>% 74 | #mutate(orig_data = TRUE) %>% 75 | complete(date = seq.Date(min(date), max(date), by = 'days')) %>% 76 | mutate(across(where(is.numeric), ~ zoo::na.approx(.x, na.rm = F) )) 77 | 78 | ## Deconvolve 79 | deconv_results <- deconvolve_b117(data, n_boot = 100) 80 | 81 | # Estimate Re 82 | intervals = list('CHE' = c(start_date-1, "2021-01-17")) 83 | all_Re <- estimate_Re_b117(deconv_results, interval_ends = intervals, 84 | estimate_types = c("step")) 85 | 86 | new_Jan_estimates <- all_Re %>% 87 | filter(date == start_date) %>% 88 | select(data_type, R = median_R_mean) %>% 89 | mutate(dataset = gsub("../data/estimated_case_numbers_|.csv", "", data_file) ) 90 | 91 | Jan_estimates <- bind_rows(Jan_estimates, new_Jan_estimates) 92 | } 93 | 94 | write_csv(Jan_estimates, paste0(plot_dir, '/', 'Jan_estimates.csv')) 95 | 96 | -------------------------------------------------------------------------------- /docs/index.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | SARS-CoV-2 Variants of Concern in Switzerland 6 | 23 | 24 | 25 | 26 |

SARS-CoV-2 Variants of Concern in Switzerland

27 |

28 | We use data form our Swiss SARS-CoV-2 Sequencing Consortium 29 | combined with genomic screening data to determine the increase in relative and absolute numbers of B.1.1.7 (or S.501Y.V1). 30 | In addition, based on the whole genome sequencing data from our consortium, we 31 | provide results for Swiss regions and further track the variant B.1.351 (or S.501Y.V2). 32 | We note that due to the delay between infection and swab collection, the numbers for a particular day 33 | reflect the epidemic situation around 8-11 days earlier. 34 |

35 |

36 | A subset of our figures is shown on the website of the Swiss National COVID-19 Science Task Force. 37 | The ISPM in Bern, Switzerland set up a complementary webpage tracking the dynamics of all 501Y mutations jointly in Switzerland 38 | (link). 39 |

40 |

41 | The methods employed for the plots below are described in a publication in Epidemics. In particular, in this manuscript, 42 | we additionally provide estimates on the transmission fitness advantage 43 | of B.1.1.7 for Switzerland and the Swiss regions. All contributors are listed as authors in the manuscript. 44 | Our code and data is available on 45 | Github. 46 |

47 |

48 | Data collection: In the Swiss SARS-CoV-2 Sequencing Consortium, we currently 49 | perform whole genome sequencing of around 4-5% of all confirmed cases on a weekly basis (Viollier dataset below). These sequences are further tagged with a geographic location. 50 | Through the work of the Consortium, we identified the first B.1.351 variant (on Dec. 26, 2020) and the first P.1 variant (on Feb. 08, 2021) in Switzerland. 51 | In addition, we assembled a dataset of a surveillance effort screening for the B.1.1.7 (501Y.V1) variant. Here, samples are first screened with targeted PCR 52 | and proposed B.1.1.7 variants are then confirmed through sequencing (Risch dataset below). 53 | Taken together, this leads to a characterization of around 11.5% of all confirmed cases since mid-December. 54 |

55 | 56 |

Important: the most recent estimates may be based on incomplete data and may thus be corrected later.

57 | 58 |

59 | 60 | This website was updated from mid-January until mid-April. For current information, please visit our new website CoV-Spectrum. 61 | 62 |

63 | 64 | 65 |

B.1.1.7 (or S.501Y.V1) Variant

66 | 67 |

First we show the estimated proportion of B.1.1.7 cases through time (vertical bars) together with the fitted logistic growth curve:

68 | 69 | 73 | 74 | 78 | 79 |

Based on the estimated proportions of B.1.1.7, we provide the estimated expected absolute number of B.1.1.7 cases through time:

80 | 81 | 85 | 86 | 90 | 91 |

Other parametrizations can be directly tried out in our web tool:

92 | 93 | 99 | 100 | 101 |

International Comparison

102 | 103 |

Finally, we show the relative frequency of B.1.1.7 for different countries.

104 | 105 | 111 | 112 |
113 | Sources: CoV-Spectrum using data from GISAID 114 |
115 | 116 | 117 |

Acknowledgements:

118 | 119 |

120 | Viollier: Samples are provided by Viollier AG. Whole genome sequenicing is performed 121 | through the 122 | Swiss SARS-CoV-2 Sequencing Consortium lead by ETH Zürich. 123 |

124 |

125 | Risch: Samples are provided and screened by Labor Risch. Genomic characterization is 126 | performed by Labor Risch, the 127 | University Hospital Basel (Clinical Mircobiology) 128 | and the University Hospitals of Geneva 129 | (Group Eckerle and 130 | Group Kaiser). 131 |

132 | 133 | 134 | -------------------------------------------------------------------------------- /figures/Re/mean_deconv_hug_geneva.csv: -------------------------------------------------------------------------------- 1 | date,data_type,sd,value 2 | 2020-12-18,Non-B117,661.9679968588372,851.6414813972056 3 | 2020-12-19,Non-B117,730.3884065415838,959.1862674679535 4 | 2020-12-20,Non-B117,761.0401583863838,1015.7146361235845 5 | 2020-12-21,B117,52.9455103855729,41.21714546152974 6 | 2020-12-21,Non-B117,701.8534882724142,947.4649327228993 7 | 2020-12-22,B117,66.4603325817468,52.792156580353726 8 | 2020-12-22,Non-B117,616.9980093513926,809.0089333899 9 | 2020-12-23,B117,89.44951936129631,68.46090508913443 10 | 2020-12-23,Non-B117,510.2385869475758,635.3615654437333 11 | 2020-12-24,B117,122.8019053697562,88.1792607088624 12 | 2020-12-24,Non-B117,400.8628219407425,475.19157325284726 13 | 2020-12-25,B117,158.76276384331095,106.02609137149298 14 | 2020-12-25,Non-B117,331.05362070988525,374.970130968898 15 | 2020-12-26,B117,183.52401386620662,117.69563549410118 16 | 2020-12-26,Non-B117,288.26604578984796,310.71981305257003 17 | 2020-12-27,B117,176.8744931791371,118.51218260725237 18 | 2020-12-27,Non-B117,274.4216746848645,288.32061261335946 19 | 2020-12-28,B117,160.80207818356615,116.71117342877292 20 | 2020-12-28,Non-B117,288.6656391234881,299.9624706879052 21 | 2020-12-29,B117,157.12046581284733,122.60967831421392 22 | 2020-12-29,Non-B117,328.31866901479503,343.7942500076174 23 | 2020-12-30,B117,182.6296288449006,143.14401488001118 24 | 2020-12-30,Non-B117,407.4765391754681,440.37732792917376 25 | 2020-12-31,B117,271.3902897986891,186.03044905289053 26 | 2020-12-31,Non-B117,605.6418222689671,639.2741603802688 27 | 2021-01-01,B117,359.0331136718583,224.31004409092682 28 | 2021-01-01,Non-B117,983.5794341086066,992.7481959467211 29 | 2021-01-02,B117,384.58324733557833,237.84766843596483 30 | 2021-01-02,Non-B117,1610.1838497146052,1602.4789006705041 31 | 2021-01-03,B117,359.5382083654259,233.91995703405257 32 | 2021-01-03,Non-B117,2535.9512642624104,2510.6413720749233 33 | 2021-01-04,B117,321.3720684099948,229.22752497083192 34 | 2021-01-04,Non-B117,3295.9796305665177,3333.8687619777975 35 | 2021-01-05,B117,326.8368189716626,255.7738189765921 36 | 2021-01-05,Non-B117,3564.885774386972,3818.897912065351 37 | 2021-01-06,B117,443.36057725325566,336.2193932509899 38 | 2021-01-06,Non-B117,3372.8021259093284,3965.522480069617 39 | 2021-01-07,B117,770.71702396409,481.3905319286242 40 | 2021-01-07,Non-B117,2962.1281134595747,3909.8333474567257 41 | 2021-01-08,B117,1070.3719793368416,617.7382388458356 42 | 2021-01-08,Non-B117,2822.302227611282,3932.1456178831986 43 | 2021-01-09,B117,1109.2167810918295,667.8869016377214 44 | 2021-01-09,Non-B117,2904.9484478724125,4032.9107299257093 45 | 2021-01-10,B117,1058.070512032795,697.0265277408092 46 | 2021-01-10,Non-B117,3034.385389337132,4083.1914557883197 47 | 2021-01-11,B117,1009.515767363542,768.8476866229986 48 | 2021-01-11,Non-B117,3145.7385252886556,4024.064252708581 49 | 2021-01-12,B117,1148.7892097551069,980.2670085238774 50 | 2021-01-12,Non-B117,3030.3757739639373,3750.1136399912316 51 | 2021-01-13,B117,1884.3299365979892,1441.574903441546 52 | 2021-01-13,Non-B117,2797.7208821257923,3324.468312909864 53 | 2021-01-14,B117,3389.5144118192916,2114.298268648571 54 | 2021-01-14,Non-B117,2502.01890551573,2904.6877962534168 55 | 2021-01-15,B117,4894.422304877772,2767.0258191836374 56 | 2021-01-15,Non-B117,2186.5948191110892,2531.1495987504645 57 | 2021-01-16,B117,5036.4169526061005,2933.9571924632232 58 | 2021-01-16,Non-B117,2034.3058980083451,2248.540288023555 59 | 2021-01-17,B117,4450.639438185653,2827.618531186172 60 | 2021-01-17,Non-B117,1974.1748405454548,2037.9380434730865 61 | 2021-01-18,B117,3992.822528833384,2776.6814859338324 62 | 2021-01-18,Non-B117,1891.5911087344973,1848.1951403833002 63 | 2021-01-19,B117,3783.1137533286037,2927.580019530841 64 | 2021-01-19,Non-B117,1809.1432150705486,1683.005500562215 65 | 2021-01-20,B117,4292.234019392905,3527.3471885868194 66 | 2021-01-20,Non-B117,1694.403436274907,1546.92556292465 67 | 2021-01-21,B117,5863.287511814372,4441.591684558574 68 | 2021-01-21,Non-B117,1547.7899664749402,1443.9691085627894 69 | 2021-01-22,B117,7501.781807825537,5101.926874455047 70 | 2021-01-22,Non-B117,1462.7525240101845,1392.539789703051 71 | 2021-01-23,B117,7618.112351282728,5029.983106082802 72 | 2021-01-23,Non-B117,1390.9757307190791,1351.6937760352077 73 | 2021-01-24,B117,6591.780116032022,4487.760689492503 74 | 2021-01-24,Non-B117,1330.1279684555789,1297.8715343149834 75 | 2021-01-25,B117,5791.110425143827,4102.775418800993 76 | 2021-01-25,Non-B117,1259.0282668843377,1225.0660090035915 77 | 2021-01-26,B117,5412.188972620576,4043.9322293302052 78 | 2021-01-26,Non-B117,1147.4880876202537,1117.0216838857432 79 | 2021-01-27,B117,5548.5533545050985,4305.817837822797 80 | 2021-01-27,Non-B117,1050.7570575070079,1005.4750798310371 81 | 2021-01-28,B117,6323.885961989826,4730.576326443228 82 | 2021-01-28,Non-B117,953.420898398149,911.1024842548596 83 | 2021-01-29,B117,6843.624087297176,4798.926671336228 84 | 2021-01-29,Non-B117,894.1971225310185,847.2115501598126 85 | 2021-01-30,B117,6812.846670998092,4449.385438473063 86 | 2021-01-30,Non-B117,874.0488899559577,817.616274021413 87 | 2021-01-31,B117,6254.881079550007,3951.538851189654 88 | 2021-01-31,Non-B117,847.299908083236,802.2865092929408 89 | 2021-02-01,B117,5585.502302887419,3576.974607248057 90 | 2021-02-01,Non-B117,816.6197400701732,782.3081859477265 91 | 2021-02-02,B117,5235.511325883787,3492.001455767122 92 | 2021-02-02,Non-B117,772.6859044027251,747.9759641215296 93 | 2021-02-03,B117,5226.929022872654,3666.1863593774797 94 | 2021-02-03,Non-B117,726.5431546424235,704.9741475766729 95 | 2021-02-04,B117,5846.116574356807,4080.8580489625715 96 | 2021-02-04,Non-B117,683.1110179005567,667.7557522237638 97 | 2021-02-05,B117,6688.608002825861,4373.543853568891 98 | 2021-02-05,Non-B117,646.4864429906581,638.8941888586528 99 | 2021-02-06,B117,7014.677054495385,4296.979669773451 100 | 2021-02-06,Non-B117,646.5118925125332,631.9132952407875 101 | 2021-02-07,B117,6747.432241677904,4020.9897116183365 102 | 2021-02-07,Non-B117,643.9698738451241,627.3319472780213 103 | 2021-02-08,B117,6196.08282753705,3777.7656298036877 104 | 2021-02-08,Non-B117,636.0195537077713,604.068818696767 105 | 2021-02-09,B117,5891.187125142161,3778.372412571591 106 | 2021-02-09,Non-B117,620.0833640888354,564.2385629139586 107 | 2021-02-10,B117,5915.057426833372,4074.807497926231 108 | 2021-02-10,Non-B117,551.4812010697531,496.79327749841224 109 | 2021-02-11,B117,6994.473262892099,4682.979249560216 110 | 2021-02-11,Non-B117,469.73540595315075,418.03575346873413 111 | 2021-02-12,B117,8688.245958336145,5077.227946377673 112 | 2021-02-12,Non-B117,397.6556764923227,343.92478858937807 113 | 2021-02-13,B117,8609.113751809135,4783.300756195612 114 | 2021-02-13,Non-B117,323.12292065804724,280.80742138285336 115 | 2021-02-14,B117,7352.657518859087,4271.042826856735 116 | 2021-02-14,Non-B117,265.15369647159116,229.65328724764393 117 | 2021-02-15,B117,5767.2491843782445,3762.130266705594 118 | 2021-02-15,Non-B117,226.9736942696923,191.5416171801149 119 | 2021-02-16,B117,4827.106460794027,3606.8775925448385 120 | 2021-02-16,Non-B117,194.0065856392865,158.59456509826583 121 | 2021-02-17,B117,5256.309790121003,4099.370613683555 122 | 2021-02-17,Non-B117,165.903392526916,130.37249322580035 123 | 2021-02-18,B117,8123.486585775173,5375.594078036549 124 | 2021-02-18,Non-B117,146.4319960113523,109.93692820528199 125 | 2021-02-19,B117,11752.066632264368,6813.660652215128 126 | 2021-02-19,Non-B117,135.16162507366442,95.7263695723967 127 | 2021-02-20,B117,12663.864135896485,7291.068506792443 128 | 2021-02-20,Non-B117,129.19272819808464,85.17727099070315 129 | 2021-02-21,B117,11361.638489783796,6954.558599750688 130 | 2021-02-21,Non-B117,123.35062509287995,76.086276223965 131 | 2021-02-22,B117,10599.961179696002,6739.623866397473 132 | 2021-02-22,Non-B117,118.49513750277984,68.42347852639983 133 | -------------------------------------------------------------------------------- /figures/Re/mean_deconv_viollier.csv: -------------------------------------------------------------------------------- 1 | date,data_type,sd,value 2 | 2020-12-09,Non-B117,673.8531651034782,1882.2781120039695 3 | 2020-12-10,Non-B117,957.6119900850622,2369.709393208233 4 | 2020-12-11,Non-B117,1238.2440328914224,2864.8727498395515 5 | 2020-12-12,Non-B117,1533.714168933874,3396.131663117041 6 | 2020-12-13,Non-B117,1779.5834537368983,3917.308667859722 7 | 2020-12-14,Non-B117,1819.8027619166494,4306.794152465616 8 | 2020-12-15,Non-B117,1656.8141645111364,4526.293225994193 9 | 2020-12-16,Non-B117,1475.861645844525,4633.4192817904095 10 | 2020-12-17,Non-B117,1380.3262272335655,4667.483362728493 11 | 2020-12-18,Non-B117,1375.1376572111783,4592.8523725425575 12 | 2020-12-19,B117,4.250823960080434,18.699527237705883 13 | 2020-12-19,Non-B117,1443.9991492360946,4446.711796900419 14 | 2020-12-20,B117,5.6566046870218445,23.938086970868586 15 | 2020-12-20,Non-B117,1432.2715572507104,4284.2556187650825 16 | 2020-12-21,B117,7.0496446937891,29.806846026548435 17 | 2020-12-21,Non-B117,1333.9481446266843,4115.5967183475195 18 | 2020-12-22,B117,8.272620429862256,36.36739456939071 19 | 2020-12-22,Non-B117,1250.9419125913575,3951.363793320498 20 | 2020-12-23,B117,9.83962548069384,43.84688503769095 21 | 2020-12-23,Non-B117,1222.5837415535616,3799.9175154959976 22 | 2020-12-24,B117,11.186498876720957,52.03135727571013 23 | 2020-12-24,Non-B117,1273.5942966889677,3671.2540436510985 24 | 2020-12-25,B117,12.55917559085176,60.85057680855237 25 | 2020-12-25,Non-B117,1421.444556845649,3566.0475230424786 26 | 2020-12-26,B117,14.50103455107319,70.27054803726263 27 | 2020-12-26,Non-B117,1503.6744426846415,3466.852782823226 28 | 2020-12-27,B117,16.69316370240141,79.94393449077185 29 | 2020-12-27,Non-B117,1456.822014326639,3359.2266894918075 30 | 2020-12-28,B117,19.559695216434687,89.90082233535767 31 | 2020-12-28,Non-B117,1361.1698247035094,3249.0933595300367 32 | 2020-12-29,B117,22.242245821959344,99.00917989857099 33 | 2020-12-29,Non-B117,1263.3909538122832,3143.964928500257 34 | 2020-12-30,B117,23.767834370808696,106.64180350935911 35 | 2020-12-30,Non-B117,1186.8404523756378,3044.0126737048577 36 | 2020-12-31,B117,25.206613095640712,113.67135563152569 37 | 2020-12-31,Non-B117,1212.808188186378,2955.911447689736 38 | 2021-01-01,B117,26.66323643966265,120.8269672880671 39 | 2021-01-01,Non-B117,1284.4888241589329,2864.84361291301 40 | 2021-01-02,B117,27.38141991537312,127.82908645734653 41 | 2021-01-02,Non-B117,1291.2609916858828,2744.709920870199 42 | 2021-01-03,B117,27.923348363585053,134.15964575604855 43 | 2021-01-03,Non-B117,1243.9406701215978,2607.0712328543336 44 | 2021-01-04,B117,29.004696130007815,140.26734146685584 45 | 2021-01-04,Non-B117,1152.5001894641093,2479.5261302149834 46 | 2021-01-05,B117,29.93689672620878,146.0487869675759 47 | 2021-01-05,Non-B117,1038.1806477394791,2376.2520343250844 48 | 2021-01-06,B117,30.678815814672603,151.81703606758296 49 | 2021-01-06,Non-B117,986.8142042480596,2298.9858165744504 50 | 2021-01-07,B117,31.154101782896664,158.30515958174945 51 | 2021-01-07,Non-B117,1031.8238218026693,2232.8089001222006 52 | 2021-01-08,B117,32.278198466757466,164.97931618648212 53 | 2021-01-08,Non-B117,1140.8638371971167,2163.606515152456 54 | 2021-01-09,B117,34.59254303926156,172.74935547925514 55 | 2021-01-09,Non-B117,1233.9828123049185,2088.1676868236777 56 | 2021-01-10,B117,37.65512188792606,182.63570573316773 57 | 2021-01-10,Non-B117,1210.5065841538626,2011.559323672861 58 | 2021-01-11,B117,41.574673853280196,194.33693728455538 59 | 2021-01-11,Non-B117,1101.3579445349537,1942.5027442291434 60 | 2021-01-12,B117,45.14092359161168,206.32750885466743 61 | 2021-01-12,Non-B117,974.6126514524937,1885.0510145320698 62 | 2021-01-13,B117,47.08382536635593,218.12001953503372 63 | 2021-01-13,Non-B117,855.7295470906935,1833.2593847361552 64 | 2021-01-14,B117,48.79689521243059,231.02853102653944 65 | 2021-01-14,Non-B117,746.7809053301149,1779.2635949472526 66 | 2021-01-15,B117,50.43318107523361,246.21723964517147 67 | 2021-01-15,Non-B117,691.4362946322975,1716.5641246440175 68 | 2021-01-16,B117,52.193000787019635,262.8006702044998 69 | 2021-01-16,Non-B117,706.2181366421285,1649.5176156511386 70 | 2021-01-17,B117,55.445555472346484,279.7024741037135 71 | 2021-01-17,Non-B117,692.675187286714,1585.3593384602802 72 | 2021-01-18,B117,59.45207404454642,297.0203709221476 73 | 2021-01-18,Non-B117,625.479530422036,1527.8678992086222 74 | 2021-01-19,B117,64.0161908054123,314.85289742507337 75 | 2021-01-19,Non-B117,562.6286034829562,1476.5594112517579 76 | 2021-01-20,B117,67.89803884083494,331.8489426955221 77 | 2021-01-20,Non-B117,520.577038731541,1427.2544166177465 78 | 2021-01-21,B117,69.4449025535728,347.04484862967877 79 | 2021-01-21,Non-B117,514.5584769706378,1379.534597963761 80 | 2021-01-22,B117,71.30508132132425,361.30135750767533 81 | 2021-01-22,Non-B117,588.6361575258887,1333.035432795409 82 | 2021-01-23,B117,74.67181150801893,375.601603676133 83 | 2021-01-23,Non-B117,656.3799063070256,1281.669130019087 84 | 2021-01-24,B117,77.90259542268453,390.0088591976946 85 | 2021-01-24,Non-B117,655.24979549024,1221.303994698321 86 | 2021-01-25,B117,81.37074482335059,404.2025746283974 87 | 2021-01-25,Non-B117,610.8877207575161,1157.6305390344532 88 | 2021-01-26,B117,85.0768477984169,416.100365118434 89 | 2021-01-26,Non-B117,536.3449351816523,1095.710656652753 90 | 2021-01-27,B117,87.43068863288325,425.5256263589593 91 | 2021-01-27,Non-B117,431.2757300733896,1036.55130842344 92 | 2021-01-28,B117,89.47296980017836,435.179775399594 93 | 2021-01-28,Non-B117,358.3758851762437,983.2626700954922 94 | 2021-01-29,B117,90.13261442220622,445.0287389083433 95 | 2021-01-29,Non-B117,351.9604899871254,932.5935922211847 96 | 2021-01-30,B117,91.46447743353077,453.89905306999316 97 | 2021-01-30,Non-B117,360.8484982076613,877.3740936954229 98 | 2021-01-31,B117,95.29555286372853,462.7020257898164 99 | 2021-01-31,Non-B117,356.9045955453843,819.6682056324304 100 | 2021-02-01,B117,99.60385333329134,472.7497311923702 101 | 2021-02-01,Non-B117,336.4333341351116,765.5977038251801 102 | 2021-02-02,B117,102.93486657671536,483.6369225950096 103 | 2021-02-02,Non-B117,298.99618677876674,717.6342994768418 104 | 2021-02-03,B117,105.09819821681849,495.21138062900263 105 | 2021-02-03,Non-B117,255.24229077042702,674.9685171441904 106 | 2021-02-04,B117,105.24670562653459,507.30174824176027 107 | 2021-02-04,Non-B117,209.0920453203981,633.6668170130708 108 | 2021-02-05,B117,105.34938351196183,519.6512672763017 109 | 2021-02-05,Non-B117,167.2305309401243,591.4942887924752 110 | 2021-02-06,B117,107.71092825655916,535.6638926319495 111 | 2021-02-06,Non-B117,149.27517394079234,548.9480641030938 112 | 2021-02-07,B117,112.94718383335648,555.9113543407126 113 | 2021-02-07,Non-B117,140.92113983002997,507.9363571907106 114 | 2021-02-08,B117,120.37877522580037,576.62348466842775 115 | 2021-02-08,Non-B117,133.4476644447352,470.08736643727974 116 | 2021-02-09,B117,126.80758296444407,597.7161004279483 117 | 2021-02-09,Non-B117,131.91746379482242,436.1073007290378 118 | 2021-02-10,B117,133.42802010236906,620.4933389157704 119 | 2021-02-10,Non-B117,136.2883218907698,404.32793298506436 120 | 2021-02-11,B117,139.29542142860248,645.8233171266294 121 | 2021-02-11,Non-B117,150.42932602693784,374.0552918117086 122 | 2021-02-12,B117,141.8431140283965,673.2044167611358 123 | 2021-02-12,Non-B117,176.59856274987422,345.64562289091396 124 | 2021-02-13,B117,145.51261214138333,702.2008115248467 125 | 2021-02-13,Non-B117,197.86310183881744,318.037103542628 126 | 2021-02-14,B117,153.4140133048444,732.6520556121011 127 | 2021-02-14,Non-B117,204.27648613609466,289.32382625697284 128 | 2021-02-15,B117,162.81161942585092,764.8034610327077 129 | 2021-02-15,Non-B117,198.10376225793433,261.1483399738424 130 | 2021-02-16,B117,173.1073194067816,799.0880834599382 131 | 2021-02-16,Non-B117,173.20731286969908,235.09459246672387 132 | 2021-02-17,B117,181.0106302382759,833.2338584412378 133 | 2021-02-17,Non-B117,126.49516303676856,211.0566890503554 134 | 2021-02-18,B117,185.44717037583808,865.4898970774414 135 | 2021-02-18,Non-B117,86.54944011017633,191.83247819361026 136 | 2021-02-19,B117,185.98370769945072,904.7347973185296 137 | 2021-02-19,Non-B117,69.66533142088065,178.359053865941 138 | 2021-02-20,B117,182.14961450522526,952.5080031440644 139 | 2021-02-20,Non-B117,63.43822245524897,167.71325869397543 140 | 2021-02-21,B117,187.00084742186814,999.8321414900342 141 | 2021-02-21,Non-B117,60.189117463958354,159.0481102948625 142 | 2021-02-22,B117,200.35670363211548,1047.0052011062005 143 | 2021-02-22,Non-B117,55.6842721518347,152.51727355339813 144 | 2021-02-23,B117,221.15923678438708,1098.2177973163732 145 | 2021-02-23,Non-B117,52.48746409079061,146.18690330408904 146 | 2021-02-24,B117,250.0704933753603,1150.0949340287937 147 | 2021-02-24,Non-B117,52.33746050621318,139.67832189083848 148 | 2021-02-25,B117,285.22288313452935,1202.466595888209 149 | 2021-02-25,Non-B117,55.29344792206554,133.23205156495897 150 | 2021-02-26,B117,325.2782651177111,1256.8204140904284 151 | 2021-02-26,Non-B117,60.912499472631005,125.73940453016924 152 | 2021-02-27,B117,367.91597054354537,1311.746292027677 153 | 2021-02-27,Non-B117,68.0683377168913,117.49980087271526 154 | 2021-02-28,B117,413.7534394019408,1368.611409601473 155 | 2021-02-28,Non-B117,76.10556291038166,109.32539134733977 156 | 2021-03-01,B117,462.7550349608002,1427.3454253857801 157 | 2021-03-01,Non-B117,84.5872453816942,100.72297772301293 158 | -------------------------------------------------------------------------------- /figures/Re/mean_deconv_risch.csv: -------------------------------------------------------------------------------- 1 | date,data_type,sd,value 2 | 2020-12-09,Non-B117,420.2046799814975,1716.5614388594618 3 | 2020-12-10,Non-B117,620.4070153252162,2142.892624395847 4 | 2020-12-11,Non-B117,824.510337989295,2570.6743290912136 5 | 2020-12-12,Non-B117,1054.7794671272236,3029.9178027685007 6 | 2020-12-13,Non-B117,1263.4327001932236,3487.7575658394935 7 | 2020-12-14,B117,1.2420538093535984,3.263242269856427 8 | 2020-12-14,Non-B117,1295.6210258316155,3839.6003350165615 9 | 2020-12-15,B117,1.364332582597044,3.924049743883798 10 | 2020-12-15,Non-B117,1153.4335561122086,4047.793532809604 11 | 2020-12-16,B117,1.5196520257639268,4.664356952978345 12 | 2020-12-16,Non-B117,1034.4056600011854,4160.039438950241 13 | 2020-12-17,B117,1.7369644918886313,5.6362822992699115 14 | 2020-12-17,Non-B117,1035.299362567922,4208.505976208466 15 | 2020-12-18,B117,2.0709979333072455,6.915802454439736 16 | 2020-12-18,Non-B117,1106.458728447749,4158.788556850052 17 | 2020-12-19,B117,2.5819265547213472,8.364840838364183 18 | 2020-12-19,Non-B117,1177.8433832983037,4042.3315394552383 19 | 2020-12-20,B117,3.1145832005099643,9.943665455375726 20 | 2020-12-20,Non-B117,1137.6673027694799,3910.4462410625656 21 | 2020-12-21,B117,3.604605955298849,11.72231853685221 22 | 2020-12-21,Non-B117,1025.7512623564014,3773.4662993638744 23 | 2020-12-22,B117,4.212227116406237,13.7375063148186 24 | 2020-12-22,Non-B117,964.9348292102563,3638.7778189475666 25 | 2020-12-23,B117,4.788662928625199,16.224805030623287 26 | 2020-12-23,Non-B117,982.1984067124984,3511.0077696124677 27 | 2020-12-24,B117,5.34947657986203,19.282995365909617 28 | 2020-12-24,Non-B117,1105.4154184614263,3398.429578740601 29 | 2020-12-25,B117,6.287049783891486,22.765717002456274 30 | 2020-12-25,Non-B117,1358.8374979992993,3303.106663287636 31 | 2020-12-26,B117,7.542239982601365,26.859856234446145 32 | 2020-12-26,Non-B117,1521.0432459907054,3211.7788882652435 33 | 2020-12-27,B117,9.027978483528171,31.729114289222426 34 | 2020-12-27,Non-B117,1516.5221099716641,3114.4144729427558 35 | 2020-12-28,B117,10.94066466349976,37.20841182857522 36 | 2020-12-28,Non-B117,1445.8586089690216,3015.324881896487 37 | 2020-12-29,B117,12.568056152061812,43.451634868359996 38 | 2020-12-29,Non-B117,1312.5777355020289,2915.32597209151 39 | 2020-12-30,B117,13.619721154760356,50.720152890017204 40 | 2020-12-30,Non-B117,1098.7331297542319,2811.68608978999 41 | 2020-12-31,B117,15.21265515480562,59.081044487357374 42 | 2020-12-31,Non-B117,1020.805340941659,2714.9873039833965 43 | 2021-01-01,B117,17.776812838793877,69.57171440855164 44 | 2021-01-01,Non-B117,1108.0620998251993,2617.264153623549 45 | 2021-01-02,B117,21.606681794941107,82.6857130246996 46 | 2021-01-02,Non-B117,1186.800893787903,2500.0634350090268 47 | 2021-01-03,B117,27.214914355057452,97.69202639942228 48 | 2021-01-03,Non-B117,1197.997188758949,2372.8661375218812 49 | 2021-01-04,B117,32.53458176451685,112.9840895874845 50 | 2021-01-04,Non-B117,1118.1441207506582,2252.781545332028 51 | 2021-01-05,B117,36.27517396694323,128.3911083650813 52 | 2021-01-05,Non-B117,971.7719154096558,2147.759770049407 53 | 2021-01-06,B117,40.751559383471445,145.449252546868 54 | 2021-01-06,Non-B117,859.9670801278836,2061.9776617738544 55 | 2021-01-07,B117,45.55788434953658,164.38584854476366 56 | 2021-01-07,Non-B117,811.7037144411131,1984.9012260619363 57 | 2021-01-08,B117,49.63235247388424,184.33381019258687 58 | 2021-01-08,Non-B117,819.131914211143,1905.321542391777 59 | 2021-01-09,B117,55.02693825161569,205.4400866966282 60 | 2021-01-09,Non-B117,867.2287797373349,1825.6808856858174 61 | 2021-01-10,B117,61.441107361344415,226.1675092906577 62 | 2021-01-10,Non-B117,853.8735172206898,1753.2163448281592 63 | 2021-01-11,B117,66.99225827427843,245.21638608679254 64 | 2021-01-11,Non-B117,781.1804990187449,1692.379917038721 65 | 2021-01-12,B117,72.48010955852136,263.2913030610516 66 | 2021-01-12,Non-B117,703.9368636374293,1642.571703497765 67 | 2021-01-13,B117,75.8939938273767,280.8244280373738 68 | 2021-01-13,Non-B117,637.4089886188432,1597.8238998070249 69 | 2021-01-14,B117,77.75984523855608,296.74620108292333 70 | 2021-01-14,Non-B117,573.9978606562771,1556.1598203743727 71 | 2021-01-15,B117,81.74590406439418,312.4288385983147 72 | 2021-01-15,Non-B117,546.7098334479061,1513.7034625944266 73 | 2021-01-16,B117,86.39194249256192,329.0974102504025 74 | 2021-01-16,Non-B117,565.68054735993735,1467.7016959991904 75 | 2021-01-17,B117,92.20284505575594,345.50672089920454 76 | 2021-01-17,Non-B117,552.4101920520952,1419.1191764772811 77 | 2021-01-18,B117,98.12906760084306,359.46282004660065 78 | 2021-01-18,Non-B117,502.2879398206147,1374.132921060132 79 | 2021-01-19,B117,101.47628327263422,370.3517992237546 80 | 2021-01-19,Non-B117,469.18004302897225,1335.631224746714 81 | 2021-01-20,B117,104.07533664884232,379.54470190317994 82 | 2021-01-20,Non-B117,455.48448445466045,1300.3806803617365 83 | 2021-01-21,B117,106.39601594131568,388.56778140089 84 | 2021-01-21,Non-B117,464.6672343218806,1267.6376859280292 85 | 2021-01-22,B117,106.69762094398423,397.54493417587963 86 | 2021-01-22,Non-B117,547.5465691247339,1236.3617229284794 87 | 2021-01-23,B117,107.6694899235203,406.15162597769347 88 | 2021-01-23,Non-B117,622.5856183870255,1198.5996031419602 89 | 2021-01-24,B117,111.34308776430716,414.13529957958923 90 | 2021-01-24,Non-B117,630.3378625900422,1149.9957607616452 91 | 2021-01-25,B117,114.77227769969352,421.01612094796224 92 | 2021-01-25,Non-B117,604.3389449400285,1096.8943734643462 93 | 2021-01-26,B117,115.69511297332961,426.3848756559768 94 | 2021-01-26,Non-B117,545.858936269253,1044.0155898338483 95 | 2021-01-27,B117,114.97847784375406,431.600402173947 96 | 2021-01-27,Non-B117,444.2323409618395,992.7772735105538 97 | 2021-01-28,B117,112.65335303255307,437.1461701704481 98 | 2021-01-28,Non-B117,372.81834882747694,947.1008326706351 99 | 2021-01-29,B117,112.10395910055297,441.7735123184784 100 | 2021-01-29,Non-B117,363.885909513962,903.7481465332411 101 | 2021-01-30,B117,116.00682203808891,446.86231757418676 102 | 2021-01-30,Non-B117,364.18501581915643,855.4246786167591 103 | 2021-01-31,B117,122.07035486906787,454.4289998107011 104 | 2021-01-31,Non-B117,355.71905227053924,804.5009053506394 105 | 2021-02-01,B117,128.17434243321475,464.4411444873481 106 | 2021-02-01,Non-B117,332.61777929690396,757.6469919709665 107 | 2021-02-02,B117,132.68372238918553,475.9274907866271 108 | 2021-02-02,Non-B117,289.2379695763438,717.644000943331 109 | 2021-02-03,B117,133.35705149763984,487.7237432257912 110 | 2021-02-03,Non-B117,250.92998346650853,684.4784303525878 111 | 2021-02-04,B117,133.5485911437669,499.9009718155334 112 | 2021-02-04,Non-B117,236.2094472990177,653.6058836566481 113 | 2021-02-05,B117,136.71232987021259,517.0559162068411 114 | 2021-02-05,Non-B117,254.0772740328292,621.1930393334457 115 | 2021-02-06,B117,143.1836951233876,539.3584773592291 116 | 2021-02-06,Non-B117,283.91641279597474,587.7174595854024 117 | 2021-02-07,B117,152.7757937037311,561.8932503568823 118 | 2021-02-07,Non-B117,286.06506393534073,555.6892337864765 119 | 2021-02-08,B117,162.33604201403128,584.9978950762643 120 | 2021-02-08,Non-B117,262.90451792618086,527.0244189187682 121 | 2021-02-09,B117,171.47769339523495,610.4784592027327 122 | 2021-02-09,Non-B117,236.0083214361282,502.5287284568206 123 | 2021-02-10,B117,178.39316958287978,637.7745696350053 124 | 2021-02-10,Non-B117,204.85887899405526,480.4709694214852 125 | 2021-02-11,B117,180.72203825078412,665.1242277935878 126 | 2021-02-11,Non-B117,174.35875322510498,460.3371072655611 127 | 2021-02-12,B117,185.89876470342261,693.2344602825668 128 | 2021-02-12,Non-B117,186.2275737351593,443.6283514932167 129 | 2021-02-13,B117,198.07353094208725,722.767627930787 130 | 2021-02-13,Non-B117,208.82687768249147,428.80477562331066 131 | 2021-02-14,B117,212.77027334112378,753.6309813182788 132 | 2021-02-14,Non-B117,213.34433909115467,413.6722603531959 133 | 2021-02-15,B117,227.37526457843518,785.7966805915096 134 | 2021-02-15,Non-B117,210.4086149253694,398.99405544721037 135 | 2021-02-16,B117,238.26787798221056,816.4833572783182 136 | 2021-02-16,Non-B117,203.23920103746664,386.3995027428298 137 | 2021-02-17,B117,240.5193913264204,843.0457321211708 138 | 2021-02-17,Non-B117,179.6425117391173,376.51037448602096 139 | 2021-02-18,B117,240.45646444326403,866.5003249141834 140 | 2021-02-18,Non-B117,157.21210052477062,370.5753895603917 141 | 2021-02-19,B117,237.29257731885605,895.997225977599 142 | 2021-02-19,Non-B117,147.45995811008348,367.6357940496315 143 | 2021-02-20,B117,232.14601378610516,933.4366785420547 144 | 2021-02-20,Non-B117,146.52948657438893,365.8575531001285 145 | 2021-02-21,B117,237.74227777703817,969.8549392585983 146 | 2021-02-21,Non-B117,136.95462449554705,365.59300109108733 147 | 2021-02-22,B117,251.54685519331022,1003.7096964336398 148 | 2021-02-22,Non-B117,116.94339303830812,366.9762158029168 149 | 2021-02-23,B117,271.8969036636111,1039.4462323124562 150 | 2021-02-23,Non-B117,103.63553323428063,368.4810681413902 151 | 2021-02-24,B117,301.9126016750466,1076.6955394190325 152 | 2021-02-24,Non-B117,100.01169867614185,370.7794890524698 153 | 2021-02-25,B117,339.4914628087337,1115.0599613702968 154 | 2021-02-25,Non-B117,104.37491355177453,374.81205108500075 155 | 2021-02-26,B117,381.482585734965,1154.4340712697435 156 | 2021-02-26,Non-B117,117.45351644935555,378.8104323921354 157 | 2021-02-27,B117,426.5920589369107,1194.5397845883347 158 | 2021-02-27,Non-B117,133.017958943916,381.7463297954318 159 | 2021-02-28,B117,475.279037287324,1236.3816051550211 160 | 2021-02-28,Non-B117,146.85386130852166,383.81661842820796 161 | 2021-03-01,B117,527.359061411711,1279.7136716892908 162 | 2021-03-01,Non-B117,161.50638306416096,384.96039413475273 163 | -------------------------------------------------------------------------------- /code/Re/estimate_Re.R: -------------------------------------------------------------------------------- 1 | ########################################################### 2 | # Estimating Re for B117 and non-B117 3 | # Author: JS Huisman 4 | ########################################################### 5 | library(tidyverse) 6 | library(lubridate) 7 | library(viridis) 8 | library(EpiEstim) 9 | 10 | # This code assumes you have cloned the git repository 11 | # https://github.com/covid-19-Re/shiny-dailyRe in the location 12 | # app_dir 13 | app_dir = '' 14 | data_dir = './data' 15 | plot_dir = './figures' 16 | 17 | source(paste0(app_dir,'/app/otherScripts/2_utils_getInfectionIncidence.R')) 18 | source(paste0(app_dir,'/app/otherScripts/3_utils_doReEstimates.R')) 19 | ########################################################### 20 | source('Re_functions.R') 21 | ########################################################### 22 | ## Read raw Data #### 23 | 24 | ########################## 25 | ## Just rerun everything below with the different setting; 26 | # will save separate plots 27 | 28 | #data_source = 'viollier' 29 | #data_source = 'risch' 30 | #start_date = as_date("2021-01-01") 31 | #start_date = as_date("2020-12-15") 32 | 33 | start_dates = c(as_date("2021-01-01")) 34 | 35 | for (data_source in c('viollier', 'risch', 'hug_geneva')){ 36 | for (start_date_ind in 1:1 ){ 37 | start_date = start_dates[start_date_ind] 38 | 39 | ########################## 40 | # there is roughly a 10 day delay between infection and case confirmation 41 | data_end_date = as_date("2021-03-04") 42 | plot_end_date = as_date("2021-02-22") 43 | 44 | raw_data = read_csv(paste0(data_dir, '/estimated_case_numbers_', data_source, '.csv')) 45 | data <- raw_data %>% 46 | filter(date <= data_end_date ) 47 | 48 | if (start_date == as_date("2021-01-01")){ 49 | plot_dir = './figures/Jan1' 50 | } else { 51 | plot_dir = './figures/Dec22' 52 | } 53 | 54 | ########################## 55 | plot_data = data %>% 56 | pivot_longer(cols = c('b117', 'original')) 57 | 58 | ggplot(plot_data, aes(x=date, y = value, fill = name)) + 59 | geom_bar(position = 'stack', stat = 'identity', alpha = 1) + 60 | #geom_bar(position = 'identity', stat = 'identity', alpha = 0.5) + 61 | facet_wrap(vars(name), ncol = 1, scale = 'free_y') + 62 | labs(x = 'Date' , y='Cases per day', fill = 'Variant') + 63 | scale_x_date(date_breaks = "1 weeks", 64 | date_labels = '%b\n%d', 65 | limits = c(start_date, plot_end_date)) + 66 | #scale_y_continuous(trans = 'log') + 67 | scale_fill_manual(values = c("#0D4A70", "#67916E")) + 68 | theme_minimal() + 69 | theme( 70 | strip.text.y= element_text(size=20), 71 | strip.text.x= element_text(size=20), 72 | axis.text.y= element_text(size=20), 73 | axis.text.x= element_text(size=20), 74 | axis.title.y = element_text(size=25), 75 | axis.title.x = element_text(size=25), 76 | legend.title = element_text(size=20), 77 | legend.text = element_text(size=20) 78 | ) 79 | 80 | ggsave(paste0(plot_dir, '/', 'B117_raw_', data_source, '.pdf'), height = 11, width = 16) 81 | # ggsave(paste0(plot_dir, '/', 'B117_raw_', data_source, '.png'), height = 11, width = 16) 82 | 83 | 84 | ## Deconvolve Data #### 85 | orig_deconv <- deconvolveIncidence(data, incidence_var = 'original', 86 | getCountParams('incubation'), 87 | getCountParams('confirmed'), 88 | smooth_param = TRUE, n_boot = 1000) 89 | 90 | b117_deconv <- deconvolveIncidence(data, incidence_var = 'b117', 91 | getCountParams('incubation'), 92 | getCountParams('confirmed'), 93 | smooth_param = TRUE, n_boot = 1000) 94 | 95 | all_deconv <- bind_rows(orig_deconv, b117_deconv) %>% 96 | select(data_type, date, replicate, value) %>% 97 | mutate(data_type = ifelse(data_type == 'infection_b117', 'B117', 'Non-B117')) 98 | 99 | ## Plot Deconvolved cases #### 100 | mean_deconv <- all_deconv %>% 101 | group_by(date, data_type) %>% 102 | summarise(sd = sd(value), 103 | value = mean(value), 104 | .groups = 'drop') 105 | 106 | write_csv(mean_deconv, paste0(plot_dir, '/', 'mean_deconv_', data_source, '.csv')) 107 | write_csv(all_deconv, paste0(plot_dir, '/', 'all_deconv_', data_source, '.csv')) 108 | 109 | ggplot() + 110 | geom_errorbar(data = mean_deconv, 111 | aes(x=date, ymin = value -sd, ymax = value +sd, colour = data_type)) + 112 | labs(x = 'Date' , y='Infections per day') + 113 | scale_x_date(date_breaks = "1 weeks", 114 | date_labels = '%b\n%d', 115 | limits = c(start_date, plot_end_date)) + 116 | #scale_y_continuous(trans = 'log') + 117 | scale_colour_manual(values = c("#0D4A70", "#67916E")) + 118 | theme_minimal() + 119 | theme( 120 | strip.text.y= element_text(size=20), 121 | strip.text.x= element_text(size=20), 122 | axis.text.y= element_text(size=20), 123 | axis.text.x= element_text(size=20), 124 | axis.title.y = element_text(size=25), 125 | axis.title.x = element_text(size=25), 126 | legend.title = element_text(size=20), 127 | legend.text = element_text(size=20) 128 | ) 129 | 130 | ggsave(paste0(plot_dir, '/', 'B117_deconv_', data_source, '.pdf'), height = 11, width = 16) 131 | # ggsave(paste0(plot_dir, '/', 'B117_deconv_', data_source, '.png'), height = 11, width = 16) 132 | 133 | ## Estimate Re #### 134 | intervals = list('CHE' = c(start_date-1, "2021-01-17")) 135 | 136 | orig_Re <- getReBootstrap(orig_deconv, interval_ends = intervals) 137 | b117_Re <- getReBootstrap(b117_deconv, interval_ends = intervals) 138 | 139 | all_Re <- bind_rows(orig_Re, b117_Re) %>% 140 | select(date, data_type, estimate_type, median_R_mean, median_R_highHPD, median_R_lowHPD) %>% 141 | mutate(data_type = ifelse(data_type == 'infection_b117', 'B117', 'Non-B117')) 142 | 143 | write_csv(all_Re, paste0(plot_dir, '/', 'all_Re_', data_source, '.csv')) 144 | 145 | ## Plot Re #### 146 | method_names <- setNames(c("Sliding Window","Piecewise constant"), 147 | c('Cori_slidingWindow', 'Cori_step')) 148 | 149 | ggplot(all_Re) + 150 | geom_ribbon(aes(x = date, ymin = median_R_lowHPD, 151 | ymax = median_R_highHPD, fill = data_type), alpha = 0.5, show.legend = F) + 152 | geom_line(aes(x = date, y = median_R_mean, colour = data_type), alpha = 1, show.legend = T) + 153 | facet_wrap(vars(estimate_type), ncol = 1, 154 | scale = 'free_y', labeller = labeller(estimate_type = method_names)) + 155 | geom_hline(yintercept = 1) + 156 | #coord_cartesian(ylim = c(0, 4)) + 157 | scale_colour_manual(values = c("#0D4A70", "#67916E")) + 158 | scale_fill_manual(values = c("#0D4A70", "#67916E")) + 159 | scale_x_date(date_breaks = "1 weeks", 160 | date_labels = '%b\n%d', 161 | limits = c(start_date, plot_end_date)) + 162 | labs( x = 'Date', y = 'Estimated reproductive number R', 163 | colour = 'Observation Type', fill = 'Observation Type') + 164 | theme_minimal() + 165 | guides(color = guide_legend(override.aes = list(size=5))) + 166 | theme( 167 | strip.text= element_text(size = 25), 168 | #strip.text.x= element_text(size=20), 169 | axis.text.y= element_text(size=20), 170 | axis.text.x= element_text(size=20), 171 | axis.title.y = element_text(size=25), 172 | axis.title.x = element_text(size=25), 173 | legend.title = element_text(size=20), 174 | legend.text = element_text(size=20), 175 | legend.position = 'bottom' 176 | ) 177 | 178 | ggsave(paste0(plot_dir, '/', 'B117_Re_', data_source, '.pdf'), height = 13, width = 14) 179 | # ggsave(paste0(plot_dir, '/', 'B117_Re_', data_source, '.png'), height = 12, width = 14) 180 | 181 | ## Plot Re Difference / Ratio #### 182 | 183 | compare_Re <- orig_Re %>% 184 | select(date, data_type, estimate_type, median_R_mean, median_R_highHPD, median_R_lowHPD, sd_mean) %>% 185 | right_join(b117_Re, by = c('date', 'estimate_type')) %>% 186 | group_by(estimate_type) %>% 187 | mutate(diff_mean = median_R_mean.y - median_R_mean.x, 188 | diff_sd = sqrt(sd_mean.y^2 + sd_mean.x^2), 189 | ratio_mean = median_R_mean.y/median_R_mean.x, 190 | ratio_sd = sqrt((1/median_R_mean.x^2)*sd_mean.y^2 + 191 | (median_R_mean.y^2/median_R_mean.x^4)*sd_mean.x^2) 192 | ) %>% 193 | ungroup() 194 | 195 | ggplot(compare_Re) + 196 | geom_ribbon(aes(x = date, ymin = diff_mean - diff_sd, 197 | ymax = diff_mean + diff_sd), alpha = 0.5, show.legend = F) + 198 | geom_line(aes(x = date, y = diff_mean), alpha = 1, show.legend = T) + 199 | facet_wrap(vars(estimate_type), ncol = 1, 200 | scale = 'free_y', labeller = labeller(estimate_type = method_names)) + 201 | coord_cartesian(ylim = c(-0.5, 1.5)) + 202 | scale_x_date(date_breaks = "1 weeks", 203 | date_labels = '%b\n%d', 204 | limits = c(start_date, plot_end_date)) + 205 | labs( x = 'Date', y = 'R(B117) - R(non-B117)', 206 | colour = 'Observation Type', fill = 'Observation Type') + 207 | theme_minimal() + 208 | guides(color = guide_legend(override.aes = list(size=5))) + 209 | theme( 210 | #strip.text.y= element_blank(), 211 | #strip.text.x= element_text(size=20), 212 | strip.text= element_text(size = 25), 213 | axis.text.y= element_text(size=20), 214 | axis.text.x= element_text(size=20), 215 | axis.title.y = element_text(size=25), 216 | axis.title.x = element_text(size=25), 217 | legend.title = element_text(size=20), 218 | legend.text = element_text(size=20), 219 | legend.position = 'bottom' 220 | ) 221 | 222 | ggsave(paste0(plot_dir, '/', 'Re_diff_', data_source, '.pdf'), height = 12, width = 14) 223 | # ggsave(paste0(plot_dir, '/', 'Re_diff_', data_source, '.png'), height = 12, width = 14) 224 | 225 | 226 | ggplot(compare_Re) + 227 | geom_ribbon(aes(x = date, ymin = ratio_mean - ratio_sd, 228 | ymax = ratio_mean + ratio_sd), alpha = 0.5, show.legend = F) + 229 | geom_line(aes(x = date, y = ratio_mean), alpha = 1, show.legend = T) + 230 | facet_wrap(vars(estimate_type), ncol = 1, 231 | scale = 'free_y', labeller = labeller(estimate_type = method_names)) + 232 | coord_cartesian(ylim = c(1, 2.5)) + 233 | scale_x_date(date_breaks = "1 weeks", 234 | date_labels = '%b\n%d', 235 | limits = c(start_date, plot_end_date)) + 236 | labs( x = 'Date', y = 'Ratio of R(B117) to R(non-B117)', 237 | colour = 'Observation Type', fill = 'Observation Type') + 238 | theme_minimal() + 239 | guides(color = guide_legend(override.aes = list(size=5))) + 240 | theme( 241 | #strip.text.y= element_blank(), 242 | #strip.text.x= element_text(size=20), 243 | strip.text= element_text(size = 25), 244 | axis.text.y= element_text(size=20), 245 | axis.text.x= element_text(size=20), 246 | axis.title.y = element_text(size=25), 247 | axis.title.x = element_text(size=25), 248 | legend.title = element_text(size=20), 249 | legend.text = element_text(size=20), 250 | legend.position = 'bottom' 251 | ) 252 | 253 | ggsave(paste0(plot_dir, '/', 'Re_ratio_', data_source, '.pdf'), height = 12, width = 14) 254 | # ggsave(paste0(plot_dir, '/', 'Re_ratio_', data_source, '.png'), height = 12, width = 14) 255 | 256 | } 257 | } 258 | -------------------------------------------------------------------------------- /figures/Re/all_Re_hug_geneva.csv: -------------------------------------------------------------------------------- 1 | date,data_type,estimate_type,median_R_mean,median_R_highHPD,median_R_lowHPD 2 | 2020-12-26,Non-B117,Cori_slidingWindow,0.5622087479958677,1.3848043591138899,0 3 | 2020-12-27,Non-B117,Cori_slidingWindow,0.48125965085499595,1.3157012935456238,0 4 | 2020-12-28,Non-B117,Cori_slidingWindow,0.4497620874194382,1.3458760738948394,0 5 | 2020-12-29,Non-B117,Cori_slidingWindow,0.46296706836576307,1.4887115523220955,0 6 | 2020-12-30,Non-B117,Cori_slidingWindow,0.5242286602261249,1.8337359800462965,0 7 | 2020-12-31,Non-B117,Cori_slidingWindow,0.6416938592588799,2.708021150517335,0 8 | 2021-01-01,Non-B117,Cori_slidingWindow,0.827443883157897,4.684434519300723,0 9 | 2021-01-02,Non-B117,Cori_slidingWindow,1.0866826661756084,8.32185133012984,0 10 | 2021-01-03,Non-B117,Cori_slidingWindow,1.3901236235980474,14.402854840562279,0 11 | 2021-01-04,Non-B117,Cori_slidingWindow,1.6692615506043815,13.907516283094777,0 12 | 2021-01-05,Non-B117,Cori_slidingWindow,1.8430634897032139,9.482637457044397,0 13 | 2021-01-06,Non-B117,Cori_slidingWindow,1.8589311807287945,6.53349516920426,0 14 | 2021-01-07,Non-B117,Cori_slidingWindow,1.7317212672242763,4.587979087656368,0 15 | 2021-01-08,Non-B117,Cori_slidingWindow,1.519664218168541,3.644217911040802,0 16 | 2021-01-09,Non-B117,Cori_slidingWindow,1.2849334299051516,3.1103377441584765,0 17 | 2021-01-10,Non-B117,Cori_slidingWindow,1.06819498715365,2.7867544787878176,0 18 | 2021-01-11,Non-B117,Cori_slidingWindow,0.8922665704761032,2.5244905741930133,0 19 | 2021-01-12,Non-B117,Cori_slidingWindow,0.7611806337020635,2.179991684522517,0 20 | 2021-01-13,Non-B117,Cori_slidingWindow,0.6722637509097177,1.822833568142741,0 21 | 2021-01-14,Non-B117,Cori_slidingWindow,0.6189963686395571,1.5899946386708028,0 22 | 2021-01-15,Non-B117,Cori_slidingWindow,0.5932675671699651,1.5114472657662419,0 23 | 2021-01-16,Non-B117,Cori_slidingWindow,0.586852673694373,1.5296994655855394,0 24 | 2021-01-17,Non-B117,Cori_slidingWindow,0.5922535215760587,1.5852495389800123,0 25 | 2021-01-18,Non-B117,Cori_slidingWindow,0.6060974488362973,1.640549625784417,0 26 | 2021-01-19,Non-B117,Cori_slidingWindow,0.6273842690597184,1.6744529374119883,0 27 | 2021-01-20,Non-B117,Cori_slidingWindow,0.6532077047457998,1.6679893010948907,0 28 | 2021-01-21,Non-B117,Cori_slidingWindow,0.6787818982648293,1.6753642032360156,0 29 | 2021-01-22,Non-B117,Cori_slidingWindow,0.7004460841301079,1.8675505166678557,0 30 | 2021-01-23,Non-B117,Cori_slidingWindow,0.7162286611445732,2.439225666571816,0 31 | 2021-01-24,Non-B117,Cori_slidingWindow,0.723730846084711,3.309345135454637,0 32 | 2021-01-25,Non-B117,Cori_slidingWindow,0.721424243999605,3.722166735595521,0 33 | 2021-01-26,Non-B117,Cori_slidingWindow,0.7103122592178386,4.227566340243626,0 34 | 2021-01-27,Non-B117,Cori_slidingWindow,0.6944291538440117,3.9260282665589505,0 35 | 2021-01-28,Non-B117,Cori_slidingWindow,0.6764754015222816,3.063583128771223,0 36 | 2021-01-29,Non-B117,Cori_slidingWindow,0.6601995517293928,3.067674502024202,0 37 | 2021-01-30,Non-B117,Cori_slidingWindow,0.6503181264524381,4.314806944579412,0 38 | 2021-01-31,Non-B117,Cori_slidingWindow,0.6514841392815031,5.619651925172958,0 39 | 2021-02-01,Non-B117,Cori_slidingWindow,0.6656345927313987,5.872775450643014,0 40 | 2021-02-02,Non-B117,Cori_slidingWindow,0.693478700563725,5.666391101596639,0 41 | 2021-02-03,Non-B117,Cori_slidingWindow,0.7329731782814329,6.032126800853155,0 42 | 2021-02-04,Non-B117,Cori_slidingWindow,0.7794616489172476,4.290402166141135,0 43 | 2021-02-05,Non-B117,Cori_slidingWindow,0.828556984355724,3.4732912116828425,0 44 | 2021-02-06,Non-B117,Cori_slidingWindow,0.8758441830263564,3.7070995821049104,0 45 | 2021-02-07,Non-B117,Cori_slidingWindow,0.9187667356949891,4.974415127648136,0 46 | 2021-02-08,Non-B117,Cori_slidingWindow,0.9526789433996381,6.200320751966022,0 47 | 2021-02-09,Non-B117,Cori_slidingWindow,0.9719858333900673,6.250233911420603,0 48 | 2021-02-10,Non-B117,Cori_slidingWindow,0.9722231160950462,5.0931106489822104,0 49 | 2021-02-11,Non-B117,Cori_slidingWindow,0.9495789717980545,3.939233010734717,0 50 | 2021-02-12,Non-B117,Cori_slidingWindow,0.9069749547965201,4.153482356966466,0 51 | 2021-02-13,Non-B117,Cori_slidingWindow,0.8512973185678147,4.420471121284713,0 52 | 2021-02-14,Non-B117,Cori_slidingWindow,0.7898681978773654,6.074981915481779,0 53 | 2021-02-15,Non-B117,Cori_slidingWindow,0.7269838495871093,5.884562317304978,0 54 | 2021-02-16,Non-B117,Cori_slidingWindow,0.6643160464521581,4.33721057082269,0 55 | 2021-02-17,Non-B117,Cori_slidingWindow,0.6022135340994882,3.2490508860108966,0 56 | 2021-02-18,Non-B117,Cori_slidingWindow,0.541565969175226,2.234382440728805,0 57 | 2021-02-19,Non-B117,Cori_slidingWindow,0.4822088366841418,2.0667631046682624,0 58 | 2021-02-20,Non-B117,Cori_slidingWindow,0.4227139268371609,2.5175530206932812,0 59 | 2021-02-21,Non-B117,Cori_slidingWindow,0.36185659056919056,2.2404298009732444,0 60 | 2021-02-22,Non-B117,Cori_slidingWindow,0.2986907796908943,1.9446090436018082,0 61 | 2020-12-24,Non-B117,Cori_step,1.0838170454453606,1.8128710558408476,0.3547630350498736 62 | 2020-12-25,Non-B117,Cori_step,1.0838170454453606,1.8128710558408476,0.3547630350498736 63 | 2020-12-26,Non-B117,Cori_step,1.0838170454453606,1.8128710558408476,0.3547630350498736 64 | 2020-12-27,Non-B117,Cori_step,1.0838170454453606,1.8128710558408476,0.3547630350498736 65 | 2020-12-28,Non-B117,Cori_step,1.0838170454453606,1.8128710558408476,0.3547630350498736 66 | 2020-12-29,Non-B117,Cori_step,1.0838170454453606,1.8128710558408476,0.3547630350498736 67 | 2020-12-30,Non-B117,Cori_step,1.0838170454453606,1.8128710558408476,0.3547630350498736 68 | 2020-12-31,Non-B117,Cori_step,1.0838170454453606,1.8128710558408476,0.3547630350498736 69 | 2021-01-01,Non-B117,Cori_step,1.0257815186576889,1.4946860814177405,0.5568769558976372 70 | 2021-01-02,Non-B117,Cori_step,1.0257815186576889,1.4946860814177405,0.5568769558976372 71 | 2021-01-03,Non-B117,Cori_step,1.0257815186576889,1.4946860814177405,0.5568769558976372 72 | 2021-01-04,Non-B117,Cori_step,1.0257815186576889,1.4946860814177405,0.5568769558976372 73 | 2021-01-05,Non-B117,Cori_step,1.0257815186576889,1.4946860814177405,0.5568769558976372 74 | 2021-01-06,Non-B117,Cori_step,1.0257815186576889,1.4946860814177405,0.5568769558976372 75 | 2021-01-07,Non-B117,Cori_step,1.0257815186576889,1.4946860814177405,0.5568769558976372 76 | 2021-01-08,Non-B117,Cori_step,1.0257815186576889,1.4946860814177405,0.5568769558976372 77 | 2021-01-09,Non-B117,Cori_step,1.0257815186576889,1.4946860814177405,0.5568769558976372 78 | 2021-01-10,Non-B117,Cori_step,1.0257815186576889,1.4946860814177405,0.5568769558976372 79 | 2021-01-11,Non-B117,Cori_step,1.0257815186576889,1.4946860814177405,0.5568769558976372 80 | 2021-01-12,Non-B117,Cori_step,1.0257815186576889,1.4946860814177405,0.5568769558976372 81 | 2021-01-13,Non-B117,Cori_step,1.0257815186576889,1.4946860814177405,0.5568769558976372 82 | 2021-01-14,Non-B117,Cori_step,1.0257815186576889,1.4946860814177405,0.5568769558976372 83 | 2021-01-15,Non-B117,Cori_step,1.0257815186576889,1.4946860814177405,0.5568769558976372 84 | 2021-01-16,Non-B117,Cori_step,1.0257815186576889,1.4946860814177405,0.5568769558976372 85 | 2021-01-17,Non-B117,Cori_step,1.0257815186576889,1.4946860814177405,0.5568769558976372 86 | 2021-01-18,Non-B117,Cori_step,0.7060065580236309,1.026784464951696,0.3852286510955659 87 | 2021-01-19,Non-B117,Cori_step,0.7060065580236309,1.026784464951696,0.3852286510955659 88 | 2021-01-20,Non-B117,Cori_step,0.7060065580236309,1.026784464951696,0.3852286510955659 89 | 2021-01-21,Non-B117,Cori_step,0.7060065580236309,1.026784464951696,0.3852286510955659 90 | 2021-01-22,Non-B117,Cori_step,0.7060065580236309,1.026784464951696,0.3852286510955659 91 | 2021-01-23,Non-B117,Cori_step,0.7060065580236309,1.026784464951696,0.3852286510955659 92 | 2021-01-24,Non-B117,Cori_step,0.7060065580236309,1.026784464951696,0.3852286510955659 93 | 2021-01-25,Non-B117,Cori_step,0.7060065580236309,1.026784464951696,0.3852286510955659 94 | 2021-01-26,Non-B117,Cori_step,0.7060065580236309,1.026784464951696,0.3852286510955659 95 | 2021-01-27,Non-B117,Cori_step,0.7060065580236309,1.026784464951696,0.3852286510955659 96 | 2021-01-28,Non-B117,Cori_step,0.7060065580236309,1.026784464951696,0.3852286510955659 97 | 2021-01-29,Non-B117,Cori_step,0.7060065580236309,1.026784464951696,0.3852286510955659 98 | 2021-01-30,Non-B117,Cori_step,0.7060065580236309,1.026784464951696,0.3852286510955659 99 | 2021-01-31,Non-B117,Cori_step,0.7060065580236309,1.026784464951696,0.3852286510955659 100 | 2021-02-01,Non-B117,Cori_step,0.7060065580236309,1.026784464951696,0.3852286510955659 101 | 2021-02-02,Non-B117,Cori_step,0.7060065580236309,1.026784464951696,0.3852286510955659 102 | 2021-02-03,Non-B117,Cori_step,0.7060065580236309,1.026784464951696,0.3852286510955659 103 | 2021-02-04,Non-B117,Cori_step,0.7060065580236309,1.026784464951696,0.3852286510955659 104 | 2021-02-05,Non-B117,Cori_step,0.7060065580236309,1.026784464951696,0.3852286510955659 105 | 2021-02-06,Non-B117,Cori_step,0.7060065580236309,1.026784464951696,0.3852286510955659 106 | 2021-02-07,Non-B117,Cori_step,0.7060065580236309,1.026784464951696,0.3852286510955659 107 | 2021-02-08,Non-B117,Cori_step,0.7060065580236309,1.026784464951696,0.3852286510955659 108 | 2021-02-09,Non-B117,Cori_step,0.7060065580236309,1.026784464951696,0.3852286510955659 109 | 2021-02-10,Non-B117,Cori_step,0.7060065580236309,1.026784464951696,0.3852286510955659 110 | 2021-02-11,Non-B117,Cori_step,0.7060065580236309,1.026784464951696,0.3852286510955659 111 | 2021-02-12,Non-B117,Cori_step,0.7060065580236309,1.026784464951696,0.3852286510955659 112 | 2021-02-13,Non-B117,Cori_step,0.7060065580236309,1.026784464951696,0.3852286510955659 113 | 2021-02-14,Non-B117,Cori_step,0.7060065580236309,1.026784464951696,0.3852286510955659 114 | 2021-02-15,Non-B117,Cori_step,0.7060065580236309,1.026784464951696,0.3852286510955659 115 | 2021-02-16,Non-B117,Cori_step,0.7060065580236309,1.026784464951696,0.3852286510955659 116 | 2021-02-17,Non-B117,Cori_step,0.7060065580236309,1.026784464951696,0.3852286510955659 117 | 2021-02-18,Non-B117,Cori_step,0.7060065580236309,1.026784464951696,0.3852286510955659 118 | 2021-02-19,Non-B117,Cori_step,0.7060065580236309,1.026784464951696,0.3852286510955659 119 | 2021-02-20,Non-B117,Cori_step,0.7060065580236309,1.026784464951696,0.3852286510955659 120 | 2021-02-21,Non-B117,Cori_step,0.7060065580236309,1.026784464951696,0.3852286510955659 121 | 2021-02-22,Non-B117,Cori_step,0.7060065580236309,1.026784464951696,0.3852286510955659 122 | 2020-12-29,B117,Cori_slidingWindow,1.434199248474293,4.369542092598717,0 123 | 2020-12-30,B117,Cori_slidingWindow,1.230460750933289,7.2270518953959195,0 124 | 2020-12-31,B117,Cori_slidingWindow,1.0773695276059434,9.39901054536255,0 125 | 2021-01-01,B117,Cori_slidingWindow,0.9559798872667864,7.8084165940497625,0 126 | 2021-01-02,B117,Cori_slidingWindow,0.8517715725521734,5.32226080191229,0 127 | 2021-01-03,B117,Cori_slidingWindow,0.7599021478084038,4.019160257943339,0 128 | 2021-01-04,B117,Cori_slidingWindow,0.6755395067894742,3.3575745723003667,0 129 | 2021-01-05,B117,Cori_slidingWindow,0.606968025877866,4.471267537819635,0 130 | 2021-01-06,B117,Cori_slidingWindow,0.56091638531353,9.597836502682178,0 131 | 2021-01-07,B117,Cori_slidingWindow,0.5437636238081633,13.551092335115522,0 132 | 2021-01-08,B117,Cori_slidingWindow,0.5729848283820097,9.747158080665734,0 133 | 2021-01-09,B117,Cori_slidingWindow,0.6555753446745065,5.88942803651372,0 134 | 2021-01-10,B117,Cori_slidingWindow,0.7906952376855926,4.629972532988516,0 135 | 2021-01-11,B117,Cori_slidingWindow,0.9702408732191952,5.304692497018041,0 136 | 2021-01-12,B117,Cori_slidingWindow,1.1859029252768125,8.712873286316968,0 137 | 2021-01-13,B117,Cori_slidingWindow,1.4152160500339892,15.055533949853906,0 138 | 2021-01-14,B117,Cori_slidingWindow,1.625786730487162,15.029685603448481,0 139 | 2021-01-15,B117,Cori_slidingWindow,1.7810056861229604,10.786728970406394,0 140 | 2021-01-16,B117,Cori_slidingWindow,1.8602461264073813,7.745410747359089,0 141 | 2021-01-17,B117,Cori_slidingWindow,1.8661967716347516,5.971032658872723,0 142 | 2021-01-18,B117,Cori_slidingWindow,1.8093988628056439,4.655587289288338,0 143 | 2021-01-19,B117,Cori_slidingWindow,1.7132266479327256,4.489120636772155,0 144 | 2021-01-20,B117,Cori_slidingWindow,1.6006395799123183,7.6259708735110525,0 145 | 2021-01-21,B117,Cori_slidingWindow,1.4883752927230036,10.691247779383865,0 146 | 2021-01-22,B117,Cori_slidingWindow,1.3859288202085647,8.639275007030907,0 147 | 2021-01-23,B117,Cori_slidingWindow,1.29795719178662,5.51156930854945,0 148 | 2021-01-24,B117,Cori_slidingWindow,1.2254725431101992,3.690634018715035,0 149 | 2021-01-25,B117,Cori_slidingWindow,1.1655482234455425,2.9774642305404213,0 150 | 2021-01-26,B117,Cori_slidingWindow,1.1144527763756777,3.2098496556860683,0 151 | 2021-01-27,B117,Cori_slidingWindow,1.0701704569360107,4.640166180125125,0 152 | 2021-01-28,B117,Cori_slidingWindow,1.0331384368835606,5.750863526725768,0 153 | 2021-01-29,B117,Cori_slidingWindow,1.0019834925416655,5.002783600853824,0 154 | 2021-01-30,B117,Cori_slidingWindow,0.9746496125415107,3.8041909792954356,0 155 | 2021-01-31,B117,Cori_slidingWindow,0.9499229634482093,3.0268726369588674,0 156 | 2021-02-01,B117,Cori_slidingWindow,0.9277354971195919,2.6207553311250833,0 157 | 2021-02-02,B117,Cori_slidingWindow,0.9094005307959329,2.7505360116405817,0 158 | 2021-02-03,B117,Cori_slidingWindow,0.8953494222599954,3.8639438763440648,0 159 | 2021-02-04,B117,Cori_slidingWindow,0.8884185403496861,5.452747521047919,0 160 | 2021-02-05,B117,Cori_slidingWindow,0.8908749624967225,6.850924180235353,0 161 | 2021-02-06,B117,Cori_slidingWindow,0.9014221458063552,6.130498012125672,0 162 | 2021-02-07,B117,Cori_slidingWindow,0.9167466199075512,6.646761996846716,0 163 | 2021-02-08,B117,Cori_slidingWindow,0.9349834411649669,7.724261969914165,0 164 | 2021-02-09,B117,Cori_slidingWindow,0.9562312276887889,9.362543475963745,0 165 | 2021-02-10,B117,Cori_slidingWindow,0.980629331085214,13.250255118582203,0 166 | 2021-02-11,B117,Cori_slidingWindow,1.0078956815377416,10.609362907667197,0 167 | 2021-02-12,B117,Cori_slidingWindow,1.0395226283342298,9.939091178252898,0 168 | 2021-02-13,B117,Cori_slidingWindow,1.0745486774458253,7.989803344914574,0 169 | 2021-02-14,B117,Cori_slidingWindow,1.1086300578829096,10.76223118103382,0 170 | 2021-02-15,B117,Cori_slidingWindow,1.1374223801283163,10.85374448888279,0 171 | 2021-02-16,B117,Cori_slidingWindow,1.1593143852139862,12.231943291764555,0 172 | 2021-02-17,B117,Cori_slidingWindow,1.1746192223784626,16.749325487746233,0 173 | 2021-02-18,B117,Cori_slidingWindow,1.1835509925470276,12.911949188134715,0 174 | 2021-02-19,B117,Cori_slidingWindow,1.187180241341678,10.013475750777287,0 175 | 2021-02-20,B117,Cori_slidingWindow,1.186937480729822,7.868863921653915,0 176 | 2021-02-21,B117,Cori_slidingWindow,1.1840267370527593,9.762567220701383,0 177 | 2021-02-22,B117,Cori_slidingWindow,1.179603975282071,8.673508576442767,0 178 | 2020-12-27,B117,Cori_step,1.8101933873111944,6.738845867924809,0 179 | 2020-12-28,B117,Cori_step,1.8101933873111944,7.409788184704302,0 180 | 2020-12-29,B117,Cori_step,1.8101933873111944,7.5120436255621,0 181 | 2020-12-30,B117,Cori_step,1.8101933873111944,7.5120436255621,0 182 | 2020-12-31,B117,Cori_step,1.8101933873111944,7.5120436255621,0 183 | 2021-01-01,B117,Cori_step,1.0146888645669314,3.8232482619287187,0 184 | 2021-01-02,B117,Cori_step,1.0146888645669314,3.8232482619287187,0 185 | 2021-01-03,B117,Cori_step,1.0146888645669314,3.8232482619287187,0 186 | 2021-01-04,B117,Cori_step,1.0146888645669314,3.8232482619287187,0 187 | 2021-01-05,B117,Cori_step,1.0146888645669314,3.8232482619287187,0 188 | 2021-01-06,B117,Cori_step,1.0146888645669314,3.8232482619287187,0 189 | 2021-01-07,B117,Cori_step,1.0146888645669314,3.8232482619287187,0 190 | 2021-01-08,B117,Cori_step,1.0146888645669314,3.8232482619287187,0 191 | 2021-01-09,B117,Cori_step,1.0146888645669314,3.8232482619287187,0 192 | 2021-01-10,B117,Cori_step,1.0146888645669314,3.8232482619287187,0 193 | 2021-01-11,B117,Cori_step,1.0146888645669314,3.8232482619287187,0 194 | 2021-01-12,B117,Cori_step,1.0146888645669314,3.8232482619287187,0 195 | 2021-01-13,B117,Cori_step,1.0146888645669314,3.8232482619287187,0 196 | 2021-01-14,B117,Cori_step,1.0146888645669314,3.8232482619287187,0 197 | 2021-01-15,B117,Cori_step,1.0146888645669314,3.8232482619287187,0 198 | 2021-01-16,B117,Cori_step,1.0146888645669314,3.8232482619287187,0 199 | 2021-01-17,B117,Cori_step,1.0146888645669314,3.8232482619287187,0 200 | 2021-01-18,B117,Cori_step,1.0908184581794775,2.0120246554300145,0.16961226092894033 201 | 2021-01-19,B117,Cori_step,1.0908184581794775,2.0120246554300145,0.16961226092894033 202 | 2021-01-20,B117,Cori_step,1.0908184581794775,2.0120246554300145,0.16961226092894033 203 | 2021-01-21,B117,Cori_step,1.0908184581794775,2.0120246554300145,0.16961226092894033 204 | 2021-01-22,B117,Cori_step,1.0908184581794775,2.0120246554300145,0.16961226092894033 205 | 2021-01-23,B117,Cori_step,1.0908184581794775,2.0120246554300145,0.16961226092894033 206 | 2021-01-24,B117,Cori_step,1.0908184581794775,2.0120246554300145,0.16961226092894033 207 | 2021-01-25,B117,Cori_step,1.0908184581794775,2.0120246554300145,0.16961226092894033 208 | 2021-01-26,B117,Cori_step,1.0908184581794775,2.0120246554300145,0.16961226092894033 209 | 2021-01-27,B117,Cori_step,1.0908184581794775,2.0120246554300145,0.16961226092894033 210 | 2021-01-28,B117,Cori_step,1.0908184581794775,2.0120246554300145,0.16961226092894033 211 | 2021-01-29,B117,Cori_step,1.0908184581794775,2.0120246554300145,0.16961226092894033 212 | 2021-01-30,B117,Cori_step,1.0908184581794775,2.0120246554300145,0.16961226092894033 213 | 2021-01-31,B117,Cori_step,1.0908184581794775,2.0120246554300145,0.16961226092894033 214 | 2021-02-01,B117,Cori_step,1.0908184581794775,2.0120246554300145,0.16961226092894033 215 | 2021-02-02,B117,Cori_step,1.0908184581794775,2.0120246554300145,0.16961226092894033 216 | 2021-02-03,B117,Cori_step,1.0908184581794775,2.0120246554300145,0.16961226092894033 217 | 2021-02-04,B117,Cori_step,1.0908184581794775,2.0120246554300145,0.16961226092894033 218 | 2021-02-05,B117,Cori_step,1.0908184581794775,2.0120246554300145,0.16961226092894033 219 | 2021-02-06,B117,Cori_step,1.0908184581794775,2.0120246554300145,0.16961226092894033 220 | 2021-02-07,B117,Cori_step,1.0908184581794775,2.0120246554300145,0.16961226092894033 221 | 2021-02-08,B117,Cori_step,1.0908184581794775,2.0120246554300145,0.16961226092894033 222 | 2021-02-09,B117,Cori_step,1.0908184581794775,2.0120246554300145,0.16961226092894033 223 | 2021-02-10,B117,Cori_step,1.0908184581794775,2.0120246554300145,0.16961226092894033 224 | 2021-02-11,B117,Cori_step,1.0908184581794775,2.0120246554300145,0.16961226092894033 225 | 2021-02-12,B117,Cori_step,1.0908184581794775,2.0120246554300145,0.16961226092894033 226 | 2021-02-13,B117,Cori_step,1.0908184581794775,2.0120246554300145,0.16961226092894033 227 | 2021-02-14,B117,Cori_step,1.0908184581794775,2.0120246554300145,0.16961226092894033 228 | 2021-02-15,B117,Cori_step,1.0908184581794775,2.0120246554300145,0.16961226092894033 229 | 2021-02-16,B117,Cori_step,1.0908184581794775,2.0120246554300145,0.16961226092894033 230 | 2021-02-17,B117,Cori_step,1.0908184581794775,2.0120246554300145,0.16961226092894033 231 | 2021-02-18,B117,Cori_step,1.0908184581794775,2.0120246554300145,0.16961226092894033 232 | 2021-02-19,B117,Cori_step,1.0908184581794775,2.0120246554300145,0.16961226092894033 233 | 2021-02-20,B117,Cori_step,1.0908184581794775,2.0120246554300145,0.16961226092894033 234 | 2021-02-21,B117,Cori_step,1.0908184581794775,2.0120246554300145,0.16961226092894033 235 | 2021-02-22,B117,Cori_step,1.0908184581794775,2.0120246554300145,0.16961226092894033 236 | -------------------------------------------------------------------------------- /figures/Re/all_Re_viollier.csv: -------------------------------------------------------------------------------- 1 | date,data_type,estimate_type,median_R_mean,median_R_highHPD,median_R_lowHPD 2 | 2020-12-17,Non-B117,Cori_slidingWindow,0.977348635298498,1.4061731601732526,0.5485241104237435 3 | 2020-12-18,Non-B117,Cori_slidingWindow,0.8916362595365482,1.3542613469734444,0.4290111720996521 4 | 2020-12-19,Non-B117,Cori_slidingWindow,0.8515913964638663,1.3055946649485566,0.3975881279791759 5 | 2020-12-20,Non-B117,Cori_slidingWindow,0.8436429838404212,1.2542221036581298,0.43306386402271263 6 | 2020-12-21,Non-B117,Cori_slidingWindow,0.85986765814535715,1.2081053427939918,0.5116299734967225 7 | 2020-12-22,Non-B117,Cori_slidingWindow,0.8924414896445253,1.1962021834857235,0.5886807958033271 8 | 2020-12-23,Non-B117,Cori_slidingWindow,0.9307909446082944,1.238796854159337,0.6227850350572517 9 | 2020-12-24,Non-B117,Cori_slidingWindow,0.9632808310493584,1.3173941523047612,0.6091675097939555 10 | 2020-12-25,Non-B117,Cori_slidingWindow,0.9816788976735521,1.3825513383503698,0.5808064569967344 11 | 2020-12-26,Non-B117,Cori_slidingWindow,0.9837727274037004,1.3943080173123643,0.5732374374950364 12 | 2020-12-27,Non-B117,Cori_slidingWindow,0.9711054725116336,1.3525311169209568,0.5896798281023102 13 | 2020-12-28,Non-B117,Cori_slidingWindow,0.9488682710784208,1.2862451552095324,0.6114913869473092 14 | 2020-12-29,Non-B117,Cori_slidingWindow,0.9220577006812433,1.2275649558143267,0.6165504455481599 15 | 2020-12-30,Non-B117,Cori_slidingWindow,0.8922772284512324,1.2159848940921216,0.5685695628103431 16 | 2020-12-31,Non-B117,Cori_slidingWindow,0.8606070709252198,1.4114299723806685,0.30978416946977105 17 | 2021-01-01,Non-B117,Cori_slidingWindow,0.8303355958601507,1.7164962120002287,0 18 | 2021-01-02,Non-B117,Cori_slidingWindow,0.8049483033465243,1.6098368366187628,5.977007428592529e-5 19 | 2021-01-03,Non-B117,Cori_slidingWindow,0.785550008215551,1.3231189405687738,0.2479810758623282 20 | 2021-01-04,Non-B117,Cori_slidingWindow,0.7721430611860765,1.1515755552181304,0.39271056715402264 21 | 2021-01-05,Non-B117,Cori_slidingWindow,0.767512266588979,1.0958789142450862,0.4391456189328717 22 | 2021-01-06,Non-B117,Cori_slidingWindow,0.7733583093367433,1.144783016203388,0.4019336024700985 23 | 2021-01-07,Non-B117,Cori_slidingWindow,0.7872682513531603,1.3075070119388732,0.2670294907674473 24 | 2021-01-08,Non-B117,Cori_slidingWindow,0.805330825559132,1.5818639817587417,0.028797669359522438 25 | 2021-01-09,Non-B117,Cori_slidingWindow,0.8245688858277993,1.6169207019620635,0.032217069693534994 26 | 2021-01-10,Non-B117,Cori_slidingWindow,0.843938797187424,1.4139413140404153,0.27393628033443274 27 | 2021-01-11,Non-B117,Cori_slidingWindow,0.8623652837327037,1.2663526450553726,0.4583779224100349 28 | 2021-01-12,Non-B117,Cori_slidingWindow,0.8788852080861078,1.1995023449773758,0.5582680711948399 29 | 2021-01-13,Non-B117,Cori_slidingWindow,0.8919791363248983,1.2174855705899568,0.5664727020598399 30 | 2021-01-14,Non-B117,Cori_slidingWindow,0.8991776384376321,1.3743137078500025,0.42404156902526163 31 | 2021-01-15,Non-B117,Cori_slidingWindow,0.8979914485063515,1.5195253796248684,0.27645751738783453 32 | 2021-01-16,Non-B117,Cori_slidingWindow,0.8884032280823472,1.4634416814908358,0.3133647746738586 33 | 2021-01-17,Non-B117,Cori_slidingWindow,0.8735563628457471,1.3335121737075442,0.4136005519839502 34 | 2021-01-18,Non-B117,Cori_slidingWindow,0.858605980520892,1.2365082115052792,0.4807037495365047 35 | 2021-01-19,Non-B117,Cori_slidingWindow,0.8472410659848724,1.1896908097479681,0.5047913222217766 36 | 2021-01-20,Non-B117,Cori_slidingWindow,0.8395850649977183,1.1957099562470006,0.48346017374843603 37 | 2021-01-21,Non-B117,Cori_slidingWindow,0.8343346714788381,1.3677040665259579,0.30096527643171844 38 | 2021-01-22,Non-B117,Cori_slidingWindow,0.8302000113258944,1.7918923635345985,0 39 | 2021-01-23,Non-B117,Cori_slidingWindow,0.8266668995059611,1.976296111085471,0 40 | 2021-01-24,Non-B117,Cori_slidingWindow,0.8229358793108438,1.5955124895988684,0.050359269022819064 41 | 2021-01-25,Non-B117,Cori_slidingWindow,0.8179768939720812,1.2778334235294158,0.3581203644147465 42 | 2021-01-26,Non-B117,Cori_slidingWindow,0.8107903684737136,1.1398944869181589,0.4816862500292683 43 | 2021-01-27,Non-B117,Cori_slidingWindow,0.8008164572129779,1.105931132430517,0.49570178199543874 44 | 2021-01-28,Non-B117,Cori_slidingWindow,0.7897309335083469,1.3027204838891975,0.2767413831274963 45 | 2021-01-29,Non-B117,Cori_slidingWindow,0.7798906708912627,1.9110232321588854,0 46 | 2021-01-30,Non-B117,Cori_slidingWindow,0.7713424081773232,2.0588018311588066,0 47 | 2021-01-31,Non-B117,Cori_slidingWindow,0.7628687069716507,1.5430917412776692,0 48 | 2021-02-01,Non-B117,Cori_slidingWindow,0.7553039953515686,1.185287716134909,0.32532027456822815 49 | 2021-02-02,Non-B117,Cori_slidingWindow,0.7519754238890117,1.061402609376811,0.4425482384012126 50 | 2021-02-03,Non-B117,Cori_slidingWindow,0.7535650005271688,1.0296401926957912,0.47748980835854643 51 | 2021-02-04,Non-B117,Cori_slidingWindow,0.7567949896627786,1.0443618547354103,0.46922812459014673 52 | 2021-02-05,Non-B117,Cori_slidingWindow,0.7597554190790409,1.3567152045880542,0.16279563357002758 53 | 2021-02-06,Non-B117,Cori_slidingWindow,0.7632722748329841,1.8861471447143736,0 54 | 2021-02-07,Non-B117,Cori_slidingWindow,0.7690177696339423,1.6262039752950987,0 55 | 2021-02-08,Non-B117,Cori_slidingWindow,0.7774560829003084,1.2484866866725457,0.3064254791280712 56 | 2021-02-09,Non-B117,Cori_slidingWindow,0.789671675928983,1.1152062787255346,0.46413707313243147 57 | 2021-02-10,Non-B117,Cori_slidingWindow,0.8061031516159809,1.121823218539238,0.4903830846927238 58 | 2021-02-11,Non-B117,Cori_slidingWindow,0.8226703451751163,1.263110698051407,0.3822299922988254 59 | 2021-02-12,Non-B117,Cori_slidingWindow,0.831914655314475,1.755846696188174,0 60 | 2021-02-13,Non-B117,Cori_slidingWindow,0.8297829259721147,2.1499212467990505,0 61 | 2021-02-14,Non-B117,Cori_slidingWindow,0.8185189308613291,1.896075475816589,0 62 | 2021-02-15,Non-B117,Cori_slidingWindow,0.8023834804690126,1.3888971273178097,0.21586983362021572 63 | 2021-02-16,Non-B117,Cori_slidingWindow,0.7832276543558505,1.133538009118341,0.43291729959336017 64 | 2021-02-17,Non-B117,Cori_slidingWindow,0.763494800324438,1.0478651705903101,0.4791244300585658 65 | 2021-02-18,Non-B117,Cori_slidingWindow,0.7479843767340364,1.021723187761451,0.47424556570662185 66 | 2021-02-19,Non-B117,Cori_slidingWindow,0.7409755094923234,1.157464488884444,0.3244865301002027 67 | 2021-02-20,Non-B117,Cori_slidingWindow,0.7416932291688286,1.7000041008653954,0 68 | 2021-02-21,Non-B117,Cori_slidingWindow,0.7484004427834844,1.805476207243669,0 69 | 2021-02-22,Non-B117,Cori_slidingWindow,0.7613167120503698,1.4012716470734856,0.12136177702725393 70 | 2021-02-23,Non-B117,Cori_slidingWindow,0.7787504693490299,1.1823524443915174,0.37514849430654246 71 | 2021-02-24,Non-B117,Cori_slidingWindow,0.7961029857316834,1.1644442668395778,0.4277617046237889 72 | 2021-02-25,Non-B117,Cori_slidingWindow,0.8084169793643934,1.2069197497827422,0.40991420894604463 73 | 2021-02-26,Non-B117,Cori_slidingWindow,0.8136793185708627,1.282395186213488,0.34496345092823766 74 | 2021-02-27,Non-B117,Cori_slidingWindow,0.8116631292829427,1.4802029730585988,0.1431232855072866 75 | 2021-02-28,Non-B117,Cori_slidingWindow,0.8025688007398488,1.4633180919806326,0.14181950949906508 76 | 2021-03-01,Non-B117,Cori_slidingWindow,0.7877419378038046,1.3032221057298337,0.2722617698777756 77 | 2020-12-15,Non-B117,Cori_step,1.14746969076209,1.2634799888690507,1.0314593926551294 78 | 2020-12-16,Non-B117,Cori_step,1.14746969076209,1.2634799888690507,1.0314593926551294 79 | 2020-12-17,Non-B117,Cori_step,1.14746969076209,1.2634799888690507,1.0314593926551294 80 | 2020-12-18,Non-B117,Cori_step,1.14746969076209,1.2634799888690507,1.0314593926551294 81 | 2020-12-19,Non-B117,Cori_step,1.14746969076209,1.2634799888690507,1.0314593926551294 82 | 2020-12-20,Non-B117,Cori_step,1.14746969076209,1.2634799888690507,1.0314593926551294 83 | 2020-12-21,Non-B117,Cori_step,1.14746969076209,1.2634799888690507,1.0314593926551294 84 | 2020-12-22,Non-B117,Cori_step,1.14746969076209,1.2634799888690507,1.0314593926551294 85 | 2020-12-23,Non-B117,Cori_step,1.14746969076209,1.2634799888690507,1.0314593926551294 86 | 2020-12-24,Non-B117,Cori_step,1.14746969076209,1.2634799888690507,1.0314593926551294 87 | 2020-12-25,Non-B117,Cori_step,1.14746969076209,1.2634799888690507,1.0314593926551294 88 | 2020-12-26,Non-B117,Cori_step,1.14746969076209,1.2634799888690507,1.0314593926551294 89 | 2020-12-27,Non-B117,Cori_step,1.14746969076209,1.2634799888690507,1.0314593926551294 90 | 2020-12-28,Non-B117,Cori_step,1.14746969076209,1.2634799888690507,1.0314593926551294 91 | 2020-12-29,Non-B117,Cori_step,1.14746969076209,1.2634799888690507,1.0314593926551294 92 | 2020-12-30,Non-B117,Cori_step,1.14746969076209,1.2634799888690507,1.0314593926551294 93 | 2020-12-31,Non-B117,Cori_step,1.14746969076209,1.2634799888690507,1.0314593926551294 94 | 2021-01-01,Non-B117,Cori_step,0.8273718272683835,1.0037405565638464,0.6510030979729206 95 | 2021-01-02,Non-B117,Cori_step,0.8273718272683835,1.0037405565638464,0.6510030979729206 96 | 2021-01-03,Non-B117,Cori_step,0.8273718272683835,1.0037405565638464,0.6510030979729206 97 | 2021-01-04,Non-B117,Cori_step,0.8273718272683835,1.0037405565638464,0.6510030979729206 98 | 2021-01-05,Non-B117,Cori_step,0.8273718272683835,1.0037405565638464,0.6510030979729206 99 | 2021-01-06,Non-B117,Cori_step,0.8273718272683835,1.0037405565638464,0.6510030979729206 100 | 2021-01-07,Non-B117,Cori_step,0.8273718272683835,1.0037405565638464,0.6510030979729206 101 | 2021-01-08,Non-B117,Cori_step,0.8273718272683835,1.0037405565638464,0.6510030979729206 102 | 2021-01-09,Non-B117,Cori_step,0.8273718272683835,1.0037405565638464,0.6510030979729206 103 | 2021-01-10,Non-B117,Cori_step,0.8273718272683835,1.0037405565638464,0.6510030979729206 104 | 2021-01-11,Non-B117,Cori_step,0.8273718272683835,1.0037405565638464,0.6510030979729206 105 | 2021-01-12,Non-B117,Cori_step,0.8273718272683835,1.0037405565638464,0.6510030979729206 106 | 2021-01-13,Non-B117,Cori_step,0.8273718272683835,1.0037405565638464,0.6510030979729206 107 | 2021-01-14,Non-B117,Cori_step,0.8273718272683835,1.0037405565638464,0.6510030979729206 108 | 2021-01-15,Non-B117,Cori_step,0.8273718272683835,1.0037405565638464,0.6510030979729206 109 | 2021-01-16,Non-B117,Cori_step,0.8273718272683835,1.0037405565638464,0.6510030979729206 110 | 2021-01-17,Non-B117,Cori_step,0.8273718272683835,1.0037405565638464,0.6510030979729206 111 | 2021-01-18,Non-B117,Cori_step,0.796980629889268,0.9098051173285608,0.6841561424499751 112 | 2021-01-19,Non-B117,Cori_step,0.796980629889268,0.9098051173285608,0.6841561424499751 113 | 2021-01-20,Non-B117,Cori_step,0.796980629889268,0.9098051173285608,0.6841561424499751 114 | 2021-01-21,Non-B117,Cori_step,0.796980629889268,0.9098051173285608,0.6841561424499751 115 | 2021-01-22,Non-B117,Cori_step,0.796980629889268,0.9098051173285608,0.6841561424499751 116 | 2021-01-23,Non-B117,Cori_step,0.796980629889268,0.9098051173285608,0.6841561424499751 117 | 2021-01-24,Non-B117,Cori_step,0.796980629889268,0.9098051173285608,0.6841561424499751 118 | 2021-01-25,Non-B117,Cori_step,0.796980629889268,0.9098051173285608,0.6841561424499751 119 | 2021-01-26,Non-B117,Cori_step,0.796980629889268,0.9098051173285608,0.6841561424499751 120 | 2021-01-27,Non-B117,Cori_step,0.796980629889268,0.9098051173285608,0.6841561424499751 121 | 2021-01-28,Non-B117,Cori_step,0.796980629889268,0.9098051173285608,0.6841561424499751 122 | 2021-01-29,Non-B117,Cori_step,0.796980629889268,0.9098051173285608,0.6841561424499751 123 | 2021-01-30,Non-B117,Cori_step,0.796980629889268,0.9098051173285608,0.6841561424499751 124 | 2021-01-31,Non-B117,Cori_step,0.796980629889268,0.9098051173285608,0.6841561424499751 125 | 2021-02-01,Non-B117,Cori_step,0.796980629889268,0.9098051173285608,0.6841561424499751 126 | 2021-02-02,Non-B117,Cori_step,0.796980629889268,0.9098051173285608,0.6841561424499751 127 | 2021-02-03,Non-B117,Cori_step,0.796980629889268,0.9098051173285608,0.6841561424499751 128 | 2021-02-04,Non-B117,Cori_step,0.796980629889268,0.9098051173285608,0.6841561424499751 129 | 2021-02-05,Non-B117,Cori_step,0.796980629889268,0.9098051173285608,0.6841561424499751 130 | 2021-02-06,Non-B117,Cori_step,0.796980629889268,0.9098051173285608,0.6841561424499751 131 | 2021-02-07,Non-B117,Cori_step,0.796980629889268,0.9098051173285608,0.6841561424499751 132 | 2021-02-08,Non-B117,Cori_step,0.796980629889268,0.9098051173285608,0.6841561424499751 133 | 2021-02-09,Non-B117,Cori_step,0.796980629889268,0.9098051173285608,0.6841561424499751 134 | 2021-02-10,Non-B117,Cori_step,0.796980629889268,0.9098051173285608,0.6841561424499751 135 | 2021-02-11,Non-B117,Cori_step,0.796980629889268,0.9098051173285608,0.6841561424499751 136 | 2021-02-12,Non-B117,Cori_step,0.796980629889268,0.9098051173285608,0.6841561424499751 137 | 2021-02-13,Non-B117,Cori_step,0.796980629889268,0.9098051173285608,0.6841561424499751 138 | 2021-02-14,Non-B117,Cori_step,0.796980629889268,0.9098051173285608,0.6841561424499751 139 | 2021-02-15,Non-B117,Cori_step,0.796980629889268,0.9098051173285608,0.6841561424499751 140 | 2021-02-16,Non-B117,Cori_step,0.796980629889268,0.9098051173285608,0.6841561424499751 141 | 2021-02-17,Non-B117,Cori_step,0.796980629889268,0.9098051173285608,0.6841561424499751 142 | 2021-02-18,Non-B117,Cori_step,0.796980629889268,0.9098051173285608,0.6841561424499751 143 | 2021-02-19,Non-B117,Cori_step,0.796980629889268,0.9098051173285608,0.6841561424499751 144 | 2021-02-20,Non-B117,Cori_step,0.796980629889268,0.9098051173285608,0.6841561424499751 145 | 2021-02-21,Non-B117,Cori_step,0.796980629889268,0.9098051173285608,0.6841561424499751 146 | 2021-02-22,Non-B117,Cori_step,0.796980629889268,0.9098051173285608,0.6841561424499751 147 | 2021-02-23,Non-B117,Cori_step,0.796980629889268,0.9098051173285608,0.6841561424499751 148 | 2021-02-24,Non-B117,Cori_step,0.796980629889268,0.9098051173285608,0.6841561424499751 149 | 2021-02-25,Non-B117,Cori_step,0.796980629889268,0.9098051173285608,0.6841561424499751 150 | 2021-02-26,Non-B117,Cori_step,0.796980629889268,0.9098051173285608,0.6841561424499751 151 | 2021-02-27,Non-B117,Cori_step,0.796980629889268,0.9098051173285608,0.6841561424499751 152 | 2021-02-28,Non-B117,Cori_step,0.796980629889268,0.9098051173285608,0.6841561424499751 153 | 2021-03-01,Non-B117,Cori_step,0.796980629889268,0.9098051173285608,0.6841561424499751 154 | 2020-12-27,B117,Cori_slidingWindow,1.8027621299239656,2.3244506799921734,1.281073579855758 155 | 2020-12-28,B117,Cori_slidingWindow,1.6481002072679285,2.1555404763993837,1.1406599381364733 156 | 2020-12-29,B117,Cori_slidingWindow,1.5310285989172303,2.007102571508104,1.0549546263263565 157 | 2020-12-30,B117,Cori_slidingWindow,1.4381385126908315,1.8531334189375495,1.0231436064441135 158 | 2020-12-31,B117,Cori_slidingWindow,1.352913680670814,1.7002257557354437,1.0056016056061843 159 | 2021-01-01,B117,Cori_slidingWindow,1.2723063969130965,1.5720185074019808,0.9725942864242123 160 | 2021-01-02,B117,Cori_slidingWindow,1.203964961107768,1.4828877208197793,0.9250422013957569 161 | 2021-01-03,B117,Cori_slidingWindow,1.1495323344316077,1.432093493424761,0.8669711754384544 162 | 2021-01-04,B117,Cori_slidingWindow,1.1082343861996464,1.4040283116375905,0.8124404607617024 163 | 2021-01-05,B117,Cori_slidingWindow,1.0783389689300602,1.3803629855288726,0.7763149523312478 164 | 2021-01-06,B117,Cori_slidingWindow,1.061986724797422,1.3569439565943302,0.7670294930005138 165 | 2021-01-07,B117,Cori_slidingWindow,1.0608880246534376,1.3406594389880473,0.7811166103188277 166 | 2021-01-08,B117,Cori_slidingWindow,1.0743963283849045,1.3447605927942705,0.8040320639755386 167 | 2021-01-09,B117,Cori_slidingWindow,1.1044451337002004,1.3804522956883807,0.82843797171202 168 | 2021-01-10,B117,Cori_slidingWindow,1.149955253952484,1.443276035552875,0.8566344723520929 169 | 2021-01-11,B117,Cori_slidingWindow,1.2084488135892744,1.5222375170353777,0.8946601101431709 170 | 2021-01-12,B117,Cori_slidingWindow,1.2699682754754156,1.5947893589780642,0.945147191972767 171 | 2021-01-13,B117,Cori_slidingWindow,1.3221646795816768,1.6365516652231962,1.0077776939401575 172 | 2021-01-14,B117,Cori_slidingWindow,1.3600042988585033,1.6488134099223095,1.071195187794697 173 | 2021-01-15,B117,Cori_slidingWindow,1.3871053324778408,1.6527130610657614,1.1214976038899203 174 | 2021-01-16,B117,Cori_slidingWindow,1.407152175611466,1.6702834854945854,1.1440208657283466 175 | 2021-01-17,B117,Cori_slidingWindow,1.4175482864534663,1.7015633749310204,1.1335331979759122 176 | 2021-01-18,B117,Cori_slidingWindow,1.4148202744426592,1.7239253185582293,1.1057152303270892 177 | 2021-01-19,B117,Cori_slidingWindow,1.400342513506428,1.724287303983971,1.076397723028885 178 | 2021-01-20,B117,Cori_slidingWindow,1.3762699449160711,1.698836189724827,1.0537037001073153 179 | 2021-01-21,B117,Cori_slidingWindow,1.343992446124577,1.645774123530023,1.0422107687191309 180 | 2021-01-22,B117,Cori_slidingWindow,1.3054434299190973,1.5789196514799655,1.0319672083582292 181 | 2021-01-23,B117,Cori_slidingWindow,1.2676921963787584,1.5250578563714008,1.010326536386116 182 | 2021-01-24,B117,Cori_slidingWindow,1.2380583088055477,1.4964768574352605,0.979639760175835 183 | 2021-01-25,B117,Cori_slidingWindow,1.2174918096477771,1.4869473444507337,0.9480362748448206 184 | 2021-01-26,B117,Cori_slidingWindow,1.2001664837404842,1.4776572322344461,0.9226757352465221 185 | 2021-01-27,B117,Cori_slidingWindow,1.181303634103275,1.4560541223969508,0.9065531458095992 186 | 2021-01-28,B117,Cori_slidingWindow,1.1590483463127212,1.421709090708363,0.8963876019170796 187 | 2021-01-29,B117,Cori_slidingWindow,1.133839653567461,1.3828388386465336,0.8848404684883886 188 | 2021-01-30,B117,Cori_slidingWindow,1.1075009608500734,1.3514070381617471,0.8635948835383999 189 | 2021-01-31,B117,Cori_slidingWindow,1.0835147889187764,1.3333708198387568,0.8336587579987961 190 | 2021-02-01,B117,Cori_slidingWindow,1.0652255744633563,1.32577843598134,0.8046727129453726 191 | 2021-02-02,B117,Cori_slidingWindow,1.0531276053255356,1.3204270714483908,0.7858281392026805 192 | 2021-02-03,B117,Cori_slidingWindow,1.0500387171805594,1.3154671039500083,0.7846103304111105 193 | 2021-02-04,B117,Cori_slidingWindow,1.0588591511781014,1.3130657728384312,0.8046525295177716 194 | 2021-02-05,B117,Cori_slidingWindow,1.076577015040895,1.3183147862157791,0.8348392438660112 195 | 2021-02-06,B117,Cori_slidingWindow,1.097276829349736,1.338198520822076,0.8563551378773959 196 | 2021-02-07,B117,Cori_slidingWindow,1.1180535496052413,1.374309046265309,0.8617980529451736 197 | 2021-02-08,B117,Cori_slidingWindow,1.1356410373338068,1.4125333553706731,0.8587487192969406 198 | 2021-02-09,B117,Cori_slidingWindow,1.1464271098423844,1.4336431601730042,0.8592110595117645 199 | 2021-02-10,B117,Cori_slidingWindow,1.1515931830822814,1.435701556213584,0.867484809950979 200 | 2021-02-11,B117,Cori_slidingWindow,1.1593257252300548,1.432532536579273,0.8861189138808367 201 | 2021-02-12,B117,Cori_slidingWindow,1.172838908573057,1.433778323419992,0.9118994937261222 202 | 2021-02-13,B117,Cori_slidingWindow,1.187454441879013,1.446137604022943,0.9287712797350829 203 | 2021-02-14,B117,Cori_slidingWindow,1.199934129828367,1.47345582306937,0.926412436587364 204 | 2021-02-15,B117,Cori_slidingWindow,1.2113445731800665,1.5038063806612378,0.9188827656988952 205 | 2021-02-16,B117,Cori_slidingWindow,1.2201378996749446,1.523927560664513,0.9163482386853761 206 | 2021-02-17,B117,Cori_slidingWindow,1.2228244987467871,1.5233448608939675,0.9223041365996066 207 | 2021-02-18,B117,Cori_slidingWindow,1.2181101982610725,1.5035596174891468,0.9326607790329982 208 | 2021-02-19,B117,Cori_slidingWindow,1.2108899006143938,1.4747256357244702,0.9470541655043174 209 | 2021-02-20,B117,Cori_slidingWindow,1.206858344813174,1.457574722429359,0.9561419671969891 210 | 2021-02-21,B117,Cori_slidingWindow,1.2066409477440396,1.4721027244373026,0.9411791710507766 211 | 2021-02-22,B117,Cori_slidingWindow,1.2076743522273672,1.5050131252575785,0.9103355791971559 212 | 2021-02-23,B117,Cori_slidingWindow,1.207572497179734,1.5299803385231383,0.8851646558363295 213 | 2021-02-24,B117,Cori_slidingWindow,1.2060849169879937,1.5390757795969474,0.87309405437904 214 | 2021-02-25,B117,Cori_slidingWindow,1.2036684263873338,1.5366870168698816,0.8706498359047862 215 | 2021-02-26,B117,Cori_slidingWindow,1.2004064825126686,1.5254252575234517,0.8753877075018854 216 | 2021-02-27,B117,Cori_slidingWindow,1.196666828225306,1.5079921342252096,0.8853415222254022 217 | 2021-02-28,B117,Cori_slidingWindow,1.192975289219477,1.487975473025245,0.8979751054137088 218 | 2021-03-01,B117,Cori_slidingWindow,1.1894465616217966,1.467634355091582,0.9112587681520112 219 | 2020-12-25,B117,Cori_step,1.8591965761952884,2.173259351012453,1.545133801378124 220 | 2020-12-26,B117,Cori_step,1.8591965761952884,2.173259351012453,1.545133801378124 221 | 2020-12-27,B117,Cori_step,1.8591965761952884,2.173259351012453,1.545133801378124 222 | 2020-12-28,B117,Cori_step,1.8591965761952884,2.173259351012453,1.545133801378124 223 | 2020-12-29,B117,Cori_step,1.8591965761952884,2.173259351012453,1.545133801378124 224 | 2020-12-30,B117,Cori_step,1.8591965761952884,2.173259351012453,1.545133801378124 225 | 2020-12-31,B117,Cori_step,1.8591965761952884,2.173259351012453,1.545133801378124 226 | 2021-01-01,B117,Cori_step,1.2405653826057361,1.412617460884332,1.0685133043271402 227 | 2021-01-02,B117,Cori_step,1.2405653826057361,1.412617460884332,1.0685133043271402 228 | 2021-01-03,B117,Cori_step,1.2405653826057361,1.412617460884332,1.0685133043271402 229 | 2021-01-04,B117,Cori_step,1.2405653826057361,1.412617460884332,1.0685133043271402 230 | 2021-01-05,B117,Cori_step,1.2405653826057361,1.412617460884332,1.0685133043271402 231 | 2021-01-06,B117,Cori_step,1.2405653826057361,1.412617460884332,1.0685133043271402 232 | 2021-01-07,B117,Cori_step,1.2405653826057361,1.412617460884332,1.0685133043271402 233 | 2021-01-08,B117,Cori_step,1.2405653826057361,1.412617460884332,1.0685133043271402 234 | 2021-01-09,B117,Cori_step,1.2405653826057361,1.412617460884332,1.0685133043271402 235 | 2021-01-10,B117,Cori_step,1.2405653826057361,1.412617460884332,1.0685133043271402 236 | 2021-01-11,B117,Cori_step,1.2405653826057361,1.412617460884332,1.0685133043271402 237 | 2021-01-12,B117,Cori_step,1.2405653826057361,1.412617460884332,1.0685133043271402 238 | 2021-01-13,B117,Cori_step,1.2405653826057361,1.412617460884332,1.0685133043271402 239 | 2021-01-14,B117,Cori_step,1.2405653826057361,1.412617460884332,1.0685133043271402 240 | 2021-01-15,B117,Cori_step,1.2405653826057361,1.412617460884332,1.0685133043271402 241 | 2021-01-16,B117,Cori_step,1.2405653826057361,1.412617460884332,1.0685133043271402 242 | 2021-01-17,B117,Cori_step,1.2405653826057361,1.412617460884332,1.0685133043271402 243 | 2021-01-18,B117,Cori_step,1.1828873715475972,1.302119229031394,1.0636555140638002 244 | 2021-01-19,B117,Cori_step,1.1828873715475972,1.302119229031394,1.0636555140638002 245 | 2021-01-20,B117,Cori_step,1.1828873715475972,1.302119229031394,1.0636555140638002 246 | 2021-01-21,B117,Cori_step,1.1828873715475972,1.302119229031394,1.0636555140638002 247 | 2021-01-22,B117,Cori_step,1.1828873715475972,1.302119229031394,1.0636555140638002 248 | 2021-01-23,B117,Cori_step,1.1828873715475972,1.302119229031394,1.0636555140638002 249 | 2021-01-24,B117,Cori_step,1.1828873715475972,1.302119229031394,1.0636555140638002 250 | 2021-01-25,B117,Cori_step,1.1828873715475972,1.302119229031394,1.0636555140638002 251 | 2021-01-26,B117,Cori_step,1.1828873715475972,1.302119229031394,1.0636555140638002 252 | 2021-01-27,B117,Cori_step,1.1828873715475972,1.302119229031394,1.0636555140638002 253 | 2021-01-28,B117,Cori_step,1.1828873715475972,1.302119229031394,1.0636555140638002 254 | 2021-01-29,B117,Cori_step,1.1828873715475972,1.302119229031394,1.0636555140638002 255 | 2021-01-30,B117,Cori_step,1.1828873715475972,1.302119229031394,1.0636555140638002 256 | 2021-01-31,B117,Cori_step,1.1828873715475972,1.302119229031394,1.0636555140638002 257 | 2021-02-01,B117,Cori_step,1.1828873715475972,1.302119229031394,1.0636555140638002 258 | 2021-02-02,B117,Cori_step,1.1828873715475972,1.302119229031394,1.0636555140638002 259 | 2021-02-03,B117,Cori_step,1.1828873715475972,1.302119229031394,1.0636555140638002 260 | 2021-02-04,B117,Cori_step,1.1828873715475972,1.302119229031394,1.0636555140638002 261 | 2021-02-05,B117,Cori_step,1.1828873715475972,1.302119229031394,1.0636555140638002 262 | 2021-02-06,B117,Cori_step,1.1828873715475972,1.302119229031394,1.0636555140638002 263 | 2021-02-07,B117,Cori_step,1.1828873715475972,1.302119229031394,1.0636555140638002 264 | 2021-02-08,B117,Cori_step,1.1828873715475972,1.302119229031394,1.0636555140638002 265 | 2021-02-09,B117,Cori_step,1.1828873715475972,1.302119229031394,1.0636555140638002 266 | 2021-02-10,B117,Cori_step,1.1828873715475972,1.302119229031394,1.0636555140638002 267 | 2021-02-11,B117,Cori_step,1.1828873715475972,1.302119229031394,1.0636555140638002 268 | 2021-02-12,B117,Cori_step,1.1828873715475972,1.302119229031394,1.0636555140638002 269 | 2021-02-13,B117,Cori_step,1.1828873715475972,1.302119229031394,1.0636555140638002 270 | 2021-02-14,B117,Cori_step,1.1828873715475972,1.302119229031394,1.0636555140638002 271 | 2021-02-15,B117,Cori_step,1.1828873715475972,1.302119229031394,1.0636555140638002 272 | 2021-02-16,B117,Cori_step,1.1828873715475972,1.302119229031394,1.0636555140638002 273 | 2021-02-17,B117,Cori_step,1.1828873715475972,1.302119229031394,1.0636555140638002 274 | 2021-02-18,B117,Cori_step,1.1828873715475972,1.302119229031394,1.0636555140638002 275 | 2021-02-19,B117,Cori_step,1.1828873715475972,1.302119229031394,1.0636555140638002 276 | 2021-02-20,B117,Cori_step,1.1828873715475972,1.302119229031394,1.0636555140638002 277 | 2021-02-21,B117,Cori_step,1.1828873715475972,1.302119229031394,1.0636555140638002 278 | 2021-02-22,B117,Cori_step,1.1828873715475972,1.302119229031394,1.0636555140638002 279 | 2021-02-23,B117,Cori_step,1.1828873715475972,1.302119229031394,1.0636555140638002 280 | 2021-02-24,B117,Cori_step,1.1828873715475972,1.302119229031394,1.0636555140638002 281 | 2021-02-25,B117,Cori_step,1.1828873715475972,1.302119229031394,1.0636555140638002 282 | 2021-02-26,B117,Cori_step,1.1828873715475972,1.302119229031394,1.0636555140638002 283 | 2021-02-27,B117,Cori_step,1.1828873715475972,1.302119229031394,1.0636555140638002 284 | 2021-02-28,B117,Cori_step,1.1828873715475972,1.302119229031394,1.0636555140638002 285 | 2021-03-01,B117,Cori_step,1.1828873715475972,1.302119229031394,1.0636555140638002 286 | -------------------------------------------------------------------------------- /data/data_variants_per_day_and_grossregion_viollier.csv: -------------------------------------------------------------------------------- 1 | date,region,sequenced,b117 2 | 2020-12-14,Central Switzerland,22,0 3 | 2020-12-14,Espace Mittelland,117,0 4 | 2020-12-14,Grossregion Nordwestschweiz,52,0 5 | 2020-12-14,Grossregion Tessin,1,0 6 | 2020-12-14,Grossregion Zurich,28,0 7 | 2020-12-14,Lake Geneva region,5,0 8 | 2020-12-14,Ostschweiz,7,0 9 | 2020-12-15,Central Switzerland,15,0 10 | 2020-12-15,Espace Mittelland,34,0 11 | 2020-12-15,Grossregion Nordwestschweiz,64,0 12 | 2020-12-15,Grossregion Zurich,6,0 13 | 2020-12-15,Lake Geneva region,5,0 14 | 2020-12-15,Ostschweiz,2,0 15 | 2020-12-16,Central Switzerland,2,0 16 | 2020-12-16,Espace Mittelland,16,0 17 | 2020-12-16,Grossregion Nordwestschweiz,16,0 18 | 2020-12-16,Grossregion Zurich,22,0 19 | 2020-12-16,Lake Geneva region,2,0 20 | 2020-12-16,Ostschweiz,8,0 21 | 2020-12-17,Espace Mittelland,32,0 22 | 2020-12-17,Grossregion Nordwestschweiz,15,0 23 | 2020-12-17,Grossregion Tessin,4,0 24 | 2020-12-17,Grossregion Zurich,10,0 25 | 2020-12-17,Lake Geneva region,6,0 26 | 2020-12-17,Ostschweiz,6,0 27 | 2020-12-18,Central Switzerland,4,0 28 | 2020-12-18,Espace Mittelland,25,0 29 | 2020-12-18,Grossregion Nordwestschweiz,42,0 30 | 2020-12-18,Grossregion Tessin,0,0 31 | 2020-12-18,Grossregion Zurich,34,0 32 | 2020-12-18,Lake Geneva region,4,0 33 | 2020-12-18,Ostschweiz,17,0 34 | 2020-12-19,Central Switzerland,2,0 35 | 2020-12-19,Espace Mittelland,21,0 36 | 2020-12-19,Grossregion Nordwestschweiz,30,0 37 | 2020-12-19,Grossregion Zurich,24,0 38 | 2020-12-19,Ostschweiz,1,0 39 | 2020-12-20,Central Switzerland,8,0 40 | 2020-12-20,Espace Mittelland,42,0 41 | 2020-12-20,Grossregion Nordwestschweiz,1,0 42 | 2020-12-20,Grossregion Zurich,24,0 43 | 2020-12-21,Central Switzerland,1,0 44 | 2020-12-21,Espace Mittelland,43,0 45 | 2020-12-21,Grossregion Nordwestschweiz,37,0 46 | 2020-12-21,Grossregion Zurich,24,0 47 | 2020-12-21,Lake Geneva region,1,0 48 | 2020-12-21,Ostschweiz,13,0 49 | 2020-12-22,Central Switzerland,10,0 50 | 2020-12-22,Espace Mittelland,25,0 51 | 2020-12-22,Grossregion Nordwestschweiz,36,0 52 | 2020-12-22,Grossregion Tessin,1,0 53 | 2020-12-22,Grossregion Zurich,16,0 54 | 2020-12-22,Lake Geneva region,4,0 55 | 2020-12-22,Ostschweiz,10,0 56 | 2020-12-23,Central Switzerland,3,0 57 | 2020-12-23,Espace Mittelland,9,0 58 | 2020-12-23,Grossregion Nordwestschweiz,13,0 59 | 2020-12-23,Grossregion Zurich,6,0 60 | 2020-12-24,Central Switzerland,1,1 61 | 2020-12-24,Espace Mittelland,30,0 62 | 2020-12-24,Grossregion Nordwestschweiz,14,0 63 | 2020-12-24,Grossregion Zurich,16,0 64 | 2020-12-24,Lake Geneva region,4,0 65 | 2020-12-24,Ostschweiz,15,0 66 | 2020-12-25,Central Switzerland,11,0 67 | 2020-12-25,Espace Mittelland,63,0 68 | 2020-12-25,Grossregion Nordwestschweiz,38,0 69 | 2020-12-25,Grossregion Zurich,24,0 70 | 2020-12-25,Lake Geneva region,2,0 71 | 2020-12-25,Ostschweiz,12,0 72 | 2020-12-26,Central Switzerland,1,0 73 | 2020-12-26,Espace Mittelland,56,3 74 | 2020-12-26,Grossregion Nordwestschweiz,37,0 75 | 2020-12-26,Grossregion Zurich,17,0 76 | 2020-12-26,Lake Geneva region,0,0 77 | 2020-12-26,Ostschweiz,19,0 78 | 2020-12-27,Central Switzerland,13,0 79 | 2020-12-27,Espace Mittelland,56,0 80 | 2020-12-27,Grossregion Nordwestschweiz,25,0 81 | 2020-12-27,Grossregion Zurich,4,0 82 | 2020-12-27,Lake Geneva region,8,0 83 | 2020-12-27,Ostschweiz,40,0 84 | 2020-12-28,Central Switzerland,20,0 85 | 2020-12-28,Espace Mittelland,48,0 86 | 2020-12-28,Grossregion Nordwestschweiz,109,0 87 | 2020-12-28,Grossregion Zurich,35,2 88 | 2020-12-28,Lake Geneva region,8,0 89 | 2020-12-28,Ostschweiz,23,0 90 | 2020-12-29,Central Switzerland,7,0 91 | 2020-12-29,Espace Mittelland,53,2 92 | 2020-12-29,Grossregion Nordwestschweiz,35,0 93 | 2020-12-29,Grossregion Tessin,6,0 94 | 2020-12-29,Grossregion Zurich,54,1 95 | 2020-12-29,Lake Geneva region,6,0 96 | 2020-12-29,Ostschweiz,21,0 97 | 2020-12-30,Central Switzerland,8,0 98 | 2020-12-30,Espace Mittelland,41,3 99 | 2020-12-30,Grossregion Nordwestschweiz,52,0 100 | 2020-12-30,Grossregion Tessin,3,0 101 | 2020-12-30,Grossregion Zurich,57,0 102 | 2020-12-30,Lake Geneva region,5,0 103 | 2020-12-30,Ostschweiz,31,0 104 | 2020-12-31,Central Switzerland,11,0 105 | 2020-12-31,Espace Mittelland,42,1 106 | 2020-12-31,Grossregion Nordwestschweiz,11,0 107 | 2020-12-31,Grossregion Tessin,0,0 108 | 2020-12-31,Grossregion Zurich,45,0 109 | 2020-12-31,Lake Geneva region,2,0 110 | 2020-12-31,Ostschweiz,17,1 111 | 2021-01-01,Espace Mittelland,53,0 112 | 2021-01-01,Grossregion Nordwestschweiz,24,0 113 | 2021-01-01,Grossregion Zurich,45,0 114 | 2021-01-01,Lake Geneva region,2,0 115 | 2021-01-01,Ostschweiz,11,0 116 | 2021-01-02,Central Switzerland,8,0 117 | 2021-01-02,Espace Mittelland,61,1 118 | 2021-01-02,Grossregion Nordwestschweiz,33,0 119 | 2021-01-02,Grossregion Zurich,32,0 120 | 2021-01-02,Lake Geneva region,3,1 121 | 2021-01-02,Ostschweiz,16,0 122 | 2021-01-03,Central Switzerland,3,0 123 | 2021-01-03,Espace Mittelland,69,1 124 | 2021-01-03,Grossregion Nordwestschweiz,27,0 125 | 2021-01-03,Grossregion Zurich,33,0 126 | 2021-01-03,Ostschweiz,27,0 127 | 2021-01-04,Central Switzerland,27,0 128 | 2021-01-04,Espace Mittelland,102,2 129 | 2021-01-04,Grossregion Nordwestschweiz,100,1 130 | 2021-01-04,Grossregion Tessin,2,0 131 | 2021-01-04,Grossregion Zurich,48,1 132 | 2021-01-04,Lake Geneva region,12,2 133 | 2021-01-04,Ostschweiz,19,0 134 | 2021-01-05,Central Switzerland,21,1 135 | 2021-01-05,Espace Mittelland,71,9 136 | 2021-01-05,Grossregion Nordwestschweiz,58,1 137 | 2021-01-05,Grossregion Tessin,3,0 138 | 2021-01-05,Grossregion Zurich,68,2 139 | 2021-01-05,Lake Geneva region,17,1 140 | 2021-01-05,Ostschweiz,17,0 141 | 2021-01-06,Central Switzerland,12,0 142 | 2021-01-06,Espace Mittelland,19,1 143 | 2021-01-06,Grossregion Nordwestschweiz,39,0 144 | 2021-01-06,Grossregion Zurich,6,0 145 | 2021-01-06,Lake Geneva region,21,1 146 | 2021-01-06,Ostschweiz,8,0 147 | 2021-01-07,Central Switzerland,5,0 148 | 2021-01-07,Espace Mittelland,58,2 149 | 2021-01-07,Grossregion Nordwestschweiz,43,1 150 | 2021-01-07,Grossregion Zurich,27,1 151 | 2021-01-07,Lake Geneva region,4,0 152 | 2021-01-07,Ostschweiz,18,1 153 | 2021-01-08,Central Switzerland,22,0 154 | 2021-01-08,Espace Mittelland,84,7 155 | 2021-01-08,Grossregion Nordwestschweiz,49,0 156 | 2021-01-08,Grossregion Tessin,5,2 157 | 2021-01-08,Grossregion Zurich,59,1 158 | 2021-01-08,Lake Geneva region,14,0 159 | 2021-01-08,Ostschweiz,24,0 160 | 2021-01-09,Central Switzerland,13,1 161 | 2021-01-09,Espace Mittelland,85,15 162 | 2021-01-09,Grossregion Nordwestschweiz,35,0 163 | 2021-01-09,Grossregion Zurich,17,0 164 | 2021-01-09,Lake Geneva region,1,0 165 | 2021-01-09,Ostschweiz,7,0 166 | 2021-01-10,Central Switzerland,4,0 167 | 2021-01-10,Espace Mittelland,65,8 168 | 2021-01-10,Grossregion Nordwestschweiz,11,0 169 | 2021-01-10,Grossregion Zurich,26,0 170 | 2021-01-10,Ostschweiz,14,0 171 | 2021-01-11,Central Switzerland,13,0 172 | 2021-01-11,Espace Mittelland,97,11 173 | 2021-01-11,Grossregion Nordwestschweiz,101,2 174 | 2021-01-11,Grossregion Tessin,1,0 175 | 2021-01-11,Grossregion Zurich,19,1 176 | 2021-01-11,Lake Geneva region,25,2 177 | 2021-01-11,Ostschweiz,9,1 178 | 2021-01-12,Central Switzerland,8,0 179 | 2021-01-12,Espace Mittelland,53,2 180 | 2021-01-12,Grossregion Nordwestschweiz,43,1 181 | 2021-01-12,Grossregion Tessin,6,0 182 | 2021-01-12,Grossregion Zurich,26,2 183 | 2021-01-12,Lake Geneva region,7,0 184 | 2021-01-12,Ostschweiz,8,0 185 | 2021-01-13,Central Switzerland,13,2 186 | 2021-01-13,Espace Mittelland,36,1 187 | 2021-01-13,Grossregion Nordwestschweiz,68,1 188 | 2021-01-13,Grossregion Tessin,1,0 189 | 2021-01-13,Grossregion Zurich,19,0 190 | 2021-01-13,Lake Geneva region,26,2 191 | 2021-01-13,Ostschweiz,14,0 192 | 2021-01-14,Central Switzerland,13,0 193 | 2021-01-14,Espace Mittelland,20,3 194 | 2021-01-14,Grossregion Nordwestschweiz,42,1 195 | 2021-01-14,Grossregion Tessin,3,0 196 | 2021-01-14,Grossregion Zurich,13,1 197 | 2021-01-14,Lake Geneva region,13,1 198 | 2021-01-14,Ostschweiz,13,0 199 | 2021-01-15,Central Switzerland,9,0 200 | 2021-01-15,Espace Mittelland,59,8 201 | 2021-01-15,Grossregion Nordwestschweiz,40,1 202 | 2021-01-15,Grossregion Tessin,2,0 203 | 2021-01-15,Grossregion Zurich,25,1 204 | 2021-01-15,Lake Geneva region,18,4 205 | 2021-01-15,Ostschweiz,17,1 206 | 2021-01-16,Central Switzerland,9,0 207 | 2021-01-16,Espace Mittelland,37,4 208 | 2021-01-16,Grossregion Nordwestschweiz,43,0 209 | 2021-01-16,Grossregion Tessin,0,0 210 | 2021-01-16,Grossregion Zurich,21,0 211 | 2021-01-16,Lake Geneva region,4,2 212 | 2021-01-16,Ostschweiz,14,0 213 | 2021-01-17,Espace Mittelland,28,2 214 | 2021-01-17,Grossregion Nordwestschweiz,25,3 215 | 2021-01-17,Grossregion Zurich,31,0 216 | 2021-01-17,Lake Geneva region,4,1 217 | 2021-01-17,Ostschweiz,1,1 218 | 2021-01-18,Central Switzerland,15,0 219 | 2021-01-18,Espace Mittelland,73,2 220 | 2021-01-18,Grossregion Nordwestschweiz,62,3 221 | 2021-01-18,Grossregion Tessin,6,0 222 | 2021-01-18,Grossregion Zurich,46,1 223 | 2021-01-18,Lake Geneva region,30,2 224 | 2021-01-18,Ostschweiz,24,0 225 | 2021-01-19,Central Switzerland,10,0 226 | 2021-01-19,Espace Mittelland,40,5 227 | 2021-01-19,Grossregion Nordwestschweiz,28,1 228 | 2021-01-19,Grossregion Tessin,5,0 229 | 2021-01-19,Grossregion Zurich,32,2 230 | 2021-01-19,Lake Geneva region,22,1 231 | 2021-01-19,Ostschweiz,20,3 232 | 2021-01-20,Central Switzerland,7,0 233 | 2021-01-20,Espace Mittelland,44,4 234 | 2021-01-20,Grossregion Nordwestschweiz,47,6 235 | 2021-01-20,Grossregion Zurich,44,5 236 | 2021-01-20,Lake Geneva region,42,2 237 | 2021-01-20,Ostschweiz,13,0 238 | 2021-01-21,Central Switzerland,16,0 239 | 2021-01-21,Espace Mittelland,60,8 240 | 2021-01-21,Grossregion Nordwestschweiz,35,6 241 | 2021-01-21,Grossregion Zurich,48,2 242 | 2021-01-21,Lake Geneva region,12,0 243 | 2021-01-21,Ostschweiz,16,0 244 | 2021-01-22,Central Switzerland,14,0 245 | 2021-01-22,Espace Mittelland,49,4 246 | 2021-01-22,Grossregion Nordwestschweiz,42,1 247 | 2021-01-22,Grossregion Tessin,1,0 248 | 2021-01-22,Grossregion Zurich,42,3 249 | 2021-01-22,Lake Geneva region,18,2 250 | 2021-01-22,Ostschweiz,17,2 251 | 2021-01-23,Central Switzerland,4,2 252 | 2021-01-23,Espace Mittelland,21,5 253 | 2021-01-23,Grossregion Nordwestschweiz,17,1 254 | 2021-01-23,Grossregion Zurich,27,3 255 | 2021-01-23,Lake Geneva region,2,0 256 | 2021-01-23,Ostschweiz,10,3 257 | 2021-01-24,Central Switzerland,1,0 258 | 2021-01-24,Espace Mittelland,31,4 259 | 2021-01-24,Grossregion Nordwestschweiz,19,3 260 | 2021-01-24,Grossregion Zurich,9,0 261 | 2021-01-24,Lake Geneva region,3,2 262 | 2021-01-24,Ostschweiz,9,0 263 | 2021-01-25,Central Switzerland,14,1 264 | 2021-01-25,Espace Mittelland,40,8 265 | 2021-01-25,Grossregion Nordwestschweiz,74,7 266 | 2021-01-25,Grossregion Tessin,2,0 267 | 2021-01-25,Grossregion Zurich,50,1 268 | 2021-01-25,Lake Geneva region,27,7 269 | 2021-01-25,Ostschweiz,17,4 270 | 2021-01-26,Central Switzerland,12,0 271 | 2021-01-26,Espace Mittelland,42,7 272 | 2021-01-26,Grossregion Nordwestschweiz,32,3 273 | 2021-01-26,Grossregion Tessin,0,0 274 | 2021-01-26,Grossregion Zurich,31,5 275 | 2021-01-26,Lake Geneva region,15,5 276 | 2021-01-26,Ostschweiz,16,2 277 | 2021-01-27,Central Switzerland,7,0 278 | 2021-01-27,Espace Mittelland,25,7 279 | 2021-01-27,Grossregion Nordwestschweiz,49,6 280 | 2021-01-27,Grossregion Tessin,3,0 281 | 2021-01-27,Grossregion Zurich,38,3 282 | 2021-01-27,Lake Geneva region,20,7 283 | 2021-01-27,Ostschweiz,12,0 284 | 2021-01-28,Central Switzerland,4,1 285 | 2021-01-28,Espace Mittelland,25,8 286 | 2021-01-28,Grossregion Nordwestschweiz,30,8 287 | 2021-01-28,Grossregion Zurich,12,1 288 | 2021-01-28,Lake Geneva region,1,0 289 | 2021-01-28,Ostschweiz,9,0 290 | 2021-01-29,Central Switzerland,8,0 291 | 2021-01-29,Espace Mittelland,18,4 292 | 2021-01-29,Grossregion Nordwestschweiz,33,7 293 | 2021-01-29,Grossregion Tessin,2,0 294 | 2021-01-29,Grossregion Zurich,12,0 295 | 2021-01-29,Lake Geneva region,9,5 296 | 2021-01-29,Ostschweiz,7,0 297 | 2021-01-30,Central Switzerland,3,0 298 | 2021-01-30,Espace Mittelland,26,2 299 | 2021-01-30,Grossregion Nordwestschweiz,15,1 300 | 2021-01-30,Grossregion Zurich,9,1 301 | 2021-01-30,Lake Geneva region,4,3 302 | 2021-01-30,Ostschweiz,21,8 303 | 2021-01-31,Espace Mittelland,14,2 304 | 2021-01-31,Grossregion Nordwestschweiz,15,3 305 | 2021-01-31,Grossregion Zurich,15,2 306 | 2021-01-31,Lake Geneva region,1,0 307 | 2021-01-31,Ostschweiz,8,1 308 | 2021-02-01,Central Switzerland,10,1 309 | 2021-02-01,Espace Mittelland,38,10 310 | 2021-02-01,Grossregion Nordwestschweiz,59,16 311 | 2021-02-01,Grossregion Tessin,2,0 312 | 2021-02-01,Grossregion Zurich,38,8 313 | 2021-02-01,Lake Geneva region,17,9 314 | 2021-02-01,Ostschweiz,15,4 315 | 2021-02-02,Central Switzerland,6,1 316 | 2021-02-02,Espace Mittelland,28,9 317 | 2021-02-02,Grossregion Nordwestschweiz,48,12 318 | 2021-02-02,Grossregion Zurich,34,5 319 | 2021-02-02,Lake Geneva region,21,7 320 | 2021-02-02,Ostschweiz,10,2 321 | 2021-02-03,Central Switzerland,4,1 322 | 2021-02-03,Espace Mittelland,22,10 323 | 2021-02-03,Grossregion Nordwestschweiz,24,5 324 | 2021-02-03,Grossregion Tessin,5,2 325 | 2021-02-03,Grossregion Zurich,33,7 326 | 2021-02-03,Lake Geneva region,13,5 327 | 2021-02-03,Ostschweiz,1,1 328 | 2021-02-04,Central Switzerland,2,0 329 | 2021-02-04,Espace Mittelland,25,4 330 | 2021-02-04,Grossregion Nordwestschweiz,31,2 331 | 2021-02-04,Grossregion Tessin,3,1 332 | 2021-02-04,Grossregion Zurich,15,4 333 | 2021-02-04,Lake Geneva region,5,3 334 | 2021-02-04,Ostschweiz,2,0 335 | 2021-02-05,Central Switzerland,6,3 336 | 2021-02-05,Espace Mittelland,28,8 337 | 2021-02-05,Grossregion Nordwestschweiz,49,23 338 | 2021-02-05,Grossregion Tessin,1,0 339 | 2021-02-05,Grossregion Zurich,34,5 340 | 2021-02-05,Lake Geneva region,19,9 341 | 2021-02-05,Ostschweiz,5,0 342 | 2021-02-06,Central Switzerland,5,0 343 | 2021-02-06,Espace Mittelland,22,5 344 | 2021-02-06,Grossregion Nordwestschweiz,7,1 345 | 2021-02-06,Grossregion Tessin,0,0 346 | 2021-02-06,Grossregion Zurich,10,1 347 | 2021-02-06,Lake Geneva region,2,2 348 | 2021-02-06,Ostschweiz,5,1 349 | 2021-02-07,Central Switzerland,1,0 350 | 2021-02-07,Espace Mittelland,31,6 351 | 2021-02-07,Grossregion Nordwestschweiz,27,18 352 | 2021-02-07,Grossregion Zurich,7,0 353 | 2021-02-07,Lake Geneva region,1,1 354 | 2021-02-07,Ostschweiz,8,4 355 | 2021-02-08,Central Switzerland,6,1 356 | 2021-02-08,Espace Mittelland,12,6 357 | 2021-02-08,Grossregion Nordwestschweiz,21,4 358 | 2021-02-08,Grossregion Tessin,1,0 359 | 2021-02-08,Grossregion Zurich,16,5 360 | 2021-02-08,Lake Geneva region,3,1 361 | 2021-02-08,Ostschweiz,9,2 362 | 2021-02-09,Central Switzerland,2,0 363 | 2021-02-09,Espace Mittelland,16,7 364 | 2021-02-09,Grossregion Nordwestschweiz,24,7 365 | 2021-02-09,Grossregion Tessin,5,0 366 | 2021-02-09,Grossregion Zurich,16,1 367 | 2021-02-09,Lake Geneva region,13,9 368 | 2021-02-09,Ostschweiz,5,2 369 | 2021-02-10,Central Switzerland,5,1 370 | 2021-02-10,Espace Mittelland,6,3 371 | 2021-02-10,Grossregion Nordwestschweiz,16,9 372 | 2021-02-10,Grossregion Zurich,11,6 373 | 2021-02-10,Lake Geneva region,3,1 374 | 2021-02-10,Ostschweiz,3,2 375 | 2021-02-11,Central Switzerland,1,0 376 | 2021-02-11,Espace Mittelland,22,15 377 | 2021-02-11,Grossregion Nordwestschweiz,10,2 378 | 2021-02-11,Grossregion Tessin,1,1 379 | 2021-02-11,Grossregion Zurich,14,6 380 | 2021-02-11,Lake Geneva region,11,8 381 | 2021-02-11,Ostschweiz,11,0 382 | 2021-02-12,Central Switzerland,5,3 383 | 2021-02-12,Espace Mittelland,15,7 384 | 2021-02-12,Grossregion Nordwestschweiz,20,7 385 | 2021-02-12,Grossregion Zurich,10,4 386 | 2021-02-12,Lake Geneva region,8,5 387 | 2021-02-12,Ostschweiz,3,1 388 | 2021-02-13,Central Switzerland,3,0 389 | 2021-02-13,Espace Mittelland,26,9 390 | 2021-02-13,Grossregion Nordwestschweiz,21,11 391 | 2021-02-13,Grossregion Zurich,6,3 392 | 2021-02-13,Lake Geneva region,13,10 393 | 2021-02-13,Ostschweiz,11,3 394 | 2021-02-14,Espace Mittelland,16,3 395 | 2021-02-14,Grossregion Nordwestschweiz,8,1 396 | 2021-02-14,Grossregion Zurich,3,1 397 | 2021-02-14,Lake Geneva region,8,4 398 | 2021-02-14,Ostschweiz,2,2 399 | 2021-02-15,Espace Mittelland,17,4 400 | 2021-02-15,Grossregion Nordwestschweiz,25,6 401 | 2021-02-15,Grossregion Tessin,1,0 402 | 2021-02-15,Grossregion Zurich,4,0 403 | 2021-02-15,Lake Geneva region,18,14 404 | 2021-02-15,Ostschweiz,9,4 405 | 2021-02-16,Central Switzerland,2,0 406 | 2021-02-16,Espace Mittelland,24,10 407 | 2021-02-16,Grossregion Nordwestschweiz,19,6 408 | 2021-02-16,Grossregion Tessin,6,0 409 | 2021-02-16,Grossregion Zurich,12,6 410 | 2021-02-16,Lake Geneva region,15,10 411 | 2021-02-16,Ostschweiz,3,2 412 | 2021-02-17,Central Switzerland,3,1 413 | 2021-02-17,Espace Mittelland,41,27 414 | 2021-02-17,Grossregion Nordwestschweiz,27,11 415 | 2021-02-17,Grossregion Tessin,10,1 416 | 2021-02-17,Grossregion Zurich,12,2 417 | 2021-02-17,Lake Geneva region,14,10 418 | 2021-02-17,Ostschweiz,13,4 419 | 2021-02-18,Central Switzerland,3,0 420 | 2021-02-18,Espace Mittelland,13,5 421 | 2021-02-18,Grossregion Nordwestschweiz,15,3 422 | 2021-02-18,Grossregion Zurich,6,2 423 | 2021-02-18,Lake Geneva region,8,6 424 | 2021-02-18,Ostschweiz,9,2 425 | 2021-02-19,Central Switzerland,3,1 426 | 2021-02-19,Espace Mittelland,25,13 427 | 2021-02-19,Grossregion Nordwestschweiz,24,8 428 | 2021-02-19,Grossregion Tessin,0,0 429 | 2021-02-19,Grossregion Zurich,15,8 430 | 2021-02-19,Lake Geneva region,6,6 431 | 2021-02-19,Ostschweiz,2,1 432 | 2021-02-20,Espace Mittelland,14,6 433 | 2021-02-20,Grossregion Nordwestschweiz,2,2 434 | 2021-02-20,Grossregion Zurich,5,1 435 | 2021-02-20,Lake Geneva region,4,4 436 | 2021-02-20,Ostschweiz,9,8 437 | 2021-02-21,Espace Mittelland,17,15 438 | 2021-02-21,Grossregion Nordwestschweiz,9,5 439 | 2021-02-21,Grossregion Zurich,3,3 440 | 2021-02-21,Lake Geneva region,4,4 441 | 2021-02-21,Ostschweiz,6,6 442 | 2021-02-22,Central Switzerland,2,1 443 | 2021-02-22,Espace Mittelland,22,13 444 | 2021-02-22,Grossregion Nordwestschweiz,27,14 445 | 2021-02-22,Grossregion Tessin,2,1 446 | 2021-02-22,Grossregion Zurich,20,15 447 | 2021-02-22,Lake Geneva region,22,20 448 | 2021-02-22,Ostschweiz,5,4 449 | 2021-02-23,Central Switzerland,1,0 450 | 2021-02-23,Espace Mittelland,17,8 451 | 2021-02-23,Grossregion Nordwestschweiz,26,18 452 | 2021-02-23,Grossregion Tessin,2,0 453 | 2021-02-23,Grossregion Zurich,14,10 454 | 2021-02-23,Lake Geneva region,16,12 455 | 2021-02-23,Ostschweiz,3,1 456 | 2021-02-24,Central Switzerland,4,3 457 | 2021-02-24,Espace Mittelland,20,13 458 | 2021-02-24,Grossregion Nordwestschweiz,15,9 459 | 2021-02-24,Grossregion Tessin,1,1 460 | 2021-02-24,Grossregion Zurich,11,7 461 | 2021-02-24,Lake Geneva region,6,6 462 | 2021-02-24,Ostschweiz,4,4 463 | 2021-02-25,Central Switzerland,2,0 464 | 2021-02-25,Espace Mittelland,27,17 465 | 2021-02-25,Grossregion Nordwestschweiz,16,8 466 | 2021-02-25,Grossregion Tessin,1,1 467 | 2021-02-25,Grossregion Zurich,1,0 468 | 2021-02-25,Lake Geneva region,5,4 469 | 2021-02-26,Espace Mittelland,9,3 470 | 2021-02-26,Grossregion Nordwestschweiz,18,6 471 | 2021-02-26,Grossregion Tessin,0,0 472 | 2021-02-26,Grossregion Zurich,6,6 473 | 2021-02-26,Lake Geneva region,1,1 474 | 2021-02-26,Ostschweiz,1,1 475 | 2021-02-27,Central Switzerland,0,0 476 | 2021-02-27,Espace Mittelland,1,0 477 | 2021-02-27,Grossregion Nordwestschweiz,8,3 478 | 2021-02-27,Grossregion Zurich,2,2 479 | 2021-02-27,Lake Geneva region,2,2 480 | 2021-02-28,Ostschweiz,1,1 481 | 2021-03-01,Central Switzerland,2,2 482 | 2021-03-01,Espace Mittelland,16,12 483 | 2021-03-01,Grossregion Nordwestschweiz,24,15 484 | 2021-03-01,Grossregion Tessin,1,1 485 | 2021-03-01,Grossregion Zurich,14,10 486 | 2021-03-01,Lake Geneva region,13,11 487 | 2021-03-01,Ostschweiz,5,1 488 | 2021-03-02,Espace Mittelland,23,15 489 | 2021-03-02,Grossregion Nordwestschweiz,31,25 490 | 2021-03-02,Grossregion Tessin,3,0 491 | 2021-03-02,Grossregion Zurich,8,8 492 | 2021-03-02,Lake Geneva region,17,16 493 | 2021-03-02,Ostschweiz,8,6 494 | 2021-03-03,Central Switzerland,2,1 495 | 2021-03-03,Espace Mittelland,36,29 496 | 2021-03-03,Grossregion Nordwestschweiz,32,29 497 | 2021-03-03,Grossregion Tessin,2,1 498 | 2021-03-03,Grossregion Zurich,14,11 499 | 2021-03-03,Lake Geneva region,15,14 500 | 2021-03-03,Ostschweiz,3,3 501 | 2021-03-04,Central Switzerland,3,2 502 | 2021-03-04,Espace Mittelland,25,20 503 | 2021-03-04,Grossregion Nordwestschweiz,27,21 504 | 2021-03-04,Grossregion Zurich,10,8 505 | 2021-03-04,Lake Geneva region,3,3 506 | 2021-03-04,Ostschweiz,2,2 507 | 2021-03-05,Central Switzerland,4,2 508 | 2021-03-05,Espace Mittelland,7,6 509 | 2021-03-05,Grossregion Nordwestschweiz,17,13 510 | 2021-03-05,Grossregion Tessin,2,1 511 | 2021-03-05,Grossregion Zurich,7,4 512 | 2021-03-05,Lake Geneva region,10,9 513 | 2021-03-05,Ostschweiz,5,5 514 | 2021-03-06,Central Switzerland,4,3 515 | 2021-03-06,Espace Mittelland,1,0 516 | 2021-03-06,Grossregion Nordwestschweiz,9,7 517 | 2021-03-06,Grossregion Tessin,1,1 518 | 2021-03-06,Grossregion Zurich,2,2 519 | 2021-03-06,Lake Geneva region,3,2 520 | 2021-03-06,Ostschweiz,1,1 521 | 2021-03-07,Espace Mittelland,5,5 522 | 2021-03-07,Grossregion Nordwestschweiz,2,2 523 | 2021-03-07,Lake Geneva region,0,0 524 | 2021-03-08,Central Switzerland,2,2 525 | 2021-03-08,Espace Mittelland,24,20 526 | 2021-03-08,Grossregion Nordwestschweiz,29,27 527 | 2021-03-08,Grossregion Tessin,3,1 528 | 2021-03-08,Grossregion Zurich,8,5 529 | 2021-03-08,Lake Geneva region,18,17 530 | 2021-03-08,Ostschweiz,18,15 531 | 2021-03-09,Central Switzerland,1,1 532 | 2021-03-09,Espace Mittelland,26,23 533 | 2021-03-09,Grossregion Nordwestschweiz,46,41 534 | 2021-03-09,Grossregion Tessin,6,6 535 | 2021-03-09,Grossregion Zurich,15,13 536 | 2021-03-09,Lake Geneva region,10,7 537 | 2021-03-09,Ostschweiz,2,2 538 | 2021-03-10,Central Switzerland,3,2 539 | 2021-03-10,Espace Mittelland,27,21 540 | 2021-03-10,Grossregion Nordwestschweiz,37,31 541 | 2021-03-10,Grossregion Tessin,5,3 542 | 2021-03-10,Grossregion Zurich,23,14 543 | 2021-03-10,Lake Geneva region,17,17 544 | 2021-03-10,Ostschweiz,5,3 545 | 2021-03-11,Central Switzerland,3,2 546 | 2021-03-11,Espace Mittelland,23,21 547 | 2021-03-11,Grossregion Nordwestschweiz,42,28 548 | 2021-03-11,Grossregion Tessin,1,1 549 | 2021-03-11,Grossregion Zurich,14,11 550 | 2021-03-11,Lake Geneva region,12,12 551 | 2021-03-11,Ostschweiz,11,10 552 | 2021-03-12,Central Switzerland,1,0 553 | 2021-03-12,Espace Mittelland,13,9 554 | 2021-03-12,Grossregion Nordwestschweiz,37,28 555 | 2021-03-12,Grossregion Tessin,4,4 556 | 2021-03-12,Grossregion Zurich,20,18 557 | 2021-03-12,Lake Geneva region,12,11 558 | 2021-03-12,Ostschweiz,9,9 559 | 2021-03-13,Central Switzerland,0,0 560 | 2021-03-13,Espace Mittelland,17,15 561 | 2021-03-13,Grossregion Nordwestschweiz,26,22 562 | 2021-03-13,Grossregion Zurich,14,14 563 | 2021-03-13,Lake Geneva region,6,6 564 | 2021-03-13,Ostschweiz,15,15 565 | 2021-03-14,Espace Mittelland,19,14 566 | 2021-03-14,Grossregion Nordwestschweiz,29,25 567 | 2021-03-14,Grossregion Zurich,4,4 568 | 2021-03-14,Lake Geneva region,3,3 569 | 2021-03-14,Ostschweiz,13,13 570 | 2021-03-15,Central Switzerland,6,4 571 | 2021-03-15,Espace Mittelland,33,30 572 | 2021-03-15,Grossregion Nordwestschweiz,79,75 573 | 2021-03-15,Grossregion Tessin,6,5 574 | 2021-03-15,Grossregion Zurich,20,18 575 | 2021-03-15,Lake Geneva region,18,16 576 | 2021-03-15,Ostschweiz,9,8 577 | 2021-03-16,Central Switzerland,5,4 578 | 2021-03-16,Espace Mittelland,40,35 579 | 2021-03-16,Grossregion Nordwestschweiz,58,53 580 | 2021-03-16,Grossregion Tessin,4,4 581 | 2021-03-16,Grossregion Zurich,6,6 582 | 2021-03-16,Lake Geneva region,16,15 583 | 2021-03-16,Ostschweiz,7,7 584 | 2021-03-17,Central Switzerland,1,1 585 | 2021-03-17,Espace Mittelland,11,10 586 | 2021-03-17,Grossregion Nordwestschweiz,27,25 587 | 2021-03-17,Grossregion Tessin,1,1 588 | 2021-03-17,Grossregion Zurich,10,9 589 | 2021-03-17,Lake Geneva region,6,6 590 | 2021-03-17,Ostschweiz,2,2 591 | 2021-03-18,Central Switzerland,2,2 592 | 2021-03-18,Espace Mittelland,9,7 593 | 2021-03-18,Grossregion Nordwestschweiz,27,26 594 | 2021-03-18,Grossregion Tessin,3,3 595 | 2021-03-18,Grossregion Zurich,12,10 596 | 2021-03-18,Lake Geneva region,13,13 597 | 2021-03-18,Ostschweiz,2,2 598 | 2021-03-19,Espace Mittelland,29,25 599 | 2021-03-19,Grossregion Nordwestschweiz,23,21 600 | 2021-03-19,Grossregion Zurich,20,18 601 | 2021-03-19,Lake Geneva region,8,8 602 | 2021-03-19,Ostschweiz,7,7 603 | 2021-03-20,Central Switzerland,2,2 604 | 2021-03-20,Espace Mittelland,28,26 605 | 2021-03-20,Grossregion Nordwestschweiz,21,20 606 | 2021-03-20,Grossregion Tessin,2,2 607 | 2021-03-20,Grossregion Zurich,2,2 608 | 2021-03-20,Lake Geneva region,10,9 609 | 2021-03-20,Ostschweiz,8,8 610 | 2021-03-21,Espace Mittelland,17,15 611 | 2021-03-21,Grossregion Nordwestschweiz,33,29 612 | 2021-03-21,Grossregion Zurich,9,9 613 | 2021-03-21,Lake Geneva region,10,10 614 | 2021-03-21,Ostschweiz,13,13 615 | 2021-03-22,Central Switzerland,8,8 616 | 2021-03-22,Espace Mittelland,47,45 617 | 2021-03-22,Grossregion Nordwestschweiz,45,43 618 | 2021-03-22,Grossregion Tessin,1,0 619 | 2021-03-22,Grossregion Zurich,20,17 620 | 2021-03-22,Lake Geneva region,10,10 621 | 2021-03-22,Ostschweiz,6,6 622 | 2021-03-23,Central Switzerland,5,5 623 | 2021-03-23,Espace Mittelland,25,22 624 | 2021-03-23,Grossregion Nordwestschweiz,59,54 625 | 2021-03-23,Grossregion Tessin,2,2 626 | 2021-03-23,Grossregion Zurich,16,15 627 | 2021-03-23,Lake Geneva region,23,23 628 | 2021-03-23,Ostschweiz,3,3 629 | 2021-03-24,Central Switzerland,4,4 630 | 2021-03-24,Espace Mittelland,29,27 631 | 2021-03-24,Grossregion Nordwestschweiz,46,39 632 | 2021-03-24,Grossregion Tessin,1,1 633 | 2021-03-24,Grossregion Zurich,10,9 634 | 2021-03-24,Lake Geneva region,17,17 635 | 2021-03-24,Ostschweiz,3,3 636 | 2021-03-25,Central Switzerland,4,4 637 | 2021-03-25,Espace Mittelland,40,40 638 | 2021-03-25,Grossregion Nordwestschweiz,61,58 639 | 2021-03-25,Grossregion Tessin,5,5 640 | 2021-03-25,Grossregion Zurich,18,17 641 | 2021-03-25,Lake Geneva region,20,18 642 | 2021-03-25,Ostschweiz,2,2 643 | 2021-03-26,Central Switzerland,6,6 644 | 2021-03-26,Espace Mittelland,23,23 645 | 2021-03-26,Grossregion Nordwestschweiz,56,51 646 | 2021-03-26,Grossregion Tessin,2,2 647 | 2021-03-26,Grossregion Zurich,16,16 648 | 2021-03-26,Lake Geneva region,9,8 649 | 2021-03-26,Ostschweiz,1,1 650 | 2021-03-27,Espace Mittelland,0,0 651 | 2021-03-27,Grossregion Nordwestschweiz,4,4 652 | 2021-03-27,Grossregion Zurich,0,0 653 | 2021-03-27,Ostschweiz,0,0 654 | 2021-03-29,Central Switzerland,1,1 655 | 2021-03-29,Espace Mittelland,25,22 656 | 2021-03-29,Grossregion Nordwestschweiz,42,35 657 | 2021-03-29,Grossregion Tessin,4,4 658 | 2021-03-29,Grossregion Zurich,5,5 659 | 2021-03-29,Lake Geneva region,1,1 660 | -------------------------------------------------------------------------------- /figures/Re/all_Re_risch.csv: -------------------------------------------------------------------------------- 1 | date,data_type,estimate_type,median_R_mean,median_R_highHPD,median_R_lowHPD 2 | 2020-12-17,Non-B117,Cori_slidingWindow,0.97974229225716,1.3100201294235958,0.6494644550907243 3 | 2020-12-18,Non-B117,Cori_slidingWindow,0.8946939542827341,1.2540826015064066,0.5353053070590617 4 | 2020-12-19,Non-B117,Cori_slidingWindow,0.8553134798803012,1.193978975855316,0.5166479839052861 5 | 2020-12-20,Non-B117,Cori_slidingWindow,0.8482502124995469,1.139174620553728,0.5573258044453656 6 | 2020-12-21,Non-B117,Cori_slidingWindow,0.8655849772361255,1.1019495497399905,0.6292204047322605 7 | 2020-12-22,Non-B117,Cori_slidingWindow,0.8993473090566416,1.1096795544652536,0.6890150636480297 8 | 2020-12-23,Non-B117,Cori_slidingWindow,0.9388459791911938,1.1805923095138755,0.6970996488685121 9 | 2020-12-24,Non-B117,Cori_slidingWindow,0.9724621498894983,1.2847518046035584,0.6601724951754381 10 | 2020-12-25,Non-B117,Cori_slidingWindow,0.9917765472416156,1.3640795161130337,0.6194735783701975 11 | 2020-12-26,Non-B117,Cori_slidingWindow,0.9942270150391952,1.3711904724046169,0.6172635576737735 12 | 2020-12-27,Non-B117,Cori_slidingWindow,0.981340258132255,1.3121590081747563,0.6505215080897537 13 | 2020-12-28,Non-B117,Cori_slidingWindow,0.9585476163176245,1.2310711737299926,0.6860240589052563 14 | 2020-12-29,Non-B117,Cori_slidingWindow,0.9309037170754895,1.164870180090005,0.696937254060974 15 | 2020-12-30,Non-B117,Cori_slidingWindow,0.8997737699997752,1.158106691673931,0.6414408483256193 16 | 2020-12-31,Non-B117,Cori_slidingWindow,0.866137866989711,1.297501204743946,0.4347745292354759 17 | 2021-01-01,Non-B117,Cori_slidingWindow,0.8333831667251513,1.4862503846297561,0.18051594882054667 18 | 2021-01-02,Non-B117,Cori_slidingWindow,0.8048350880322499,1.4102677496050506,0.19940242645944917 19 | 2021-01-03,Non-B117,Cori_slidingWindow,0.7814706941612685,1.2205540540066924,0.34238733431584456 20 | 2021-01-04,Non-B117,Cori_slidingWindow,0.7634750875600141,1.0793242903789855,0.4476258847410427 21 | 2021-01-05,Non-B117,Cori_slidingWindow,0.7539112093560886,1.0072057861198402,0.5006166325923369 22 | 2021-01-06,Non-B117,Cori_slidingWindow,0.7548356028882746,1.0160570763207175,0.49361412945583155 23 | 2021-01-07,Non-B117,Cori_slidingWindow,0.7642836390479557,1.1293470694732792,0.39922020862263213 24 | 2021-01-08,Non-B117,Cori_slidingWindow,0.7789077562869196,1.3954503758993422,0.16236513667449703 25 | 2021-01-09,Non-B117,Cori_slidingWindow,0.7960794699826045,1.4591410203993163,0.1330179195658927 26 | 2021-01-10,Non-B117,Cori_slidingWindow,0.8148908413259897,1.281954370206563,0.3478273124454164 27 | 2021-01-11,Non-B117,Cori_slidingWindow,0.8345367481501459,1.1560220596871105,0.5130514366131813 28 | 2021-01-12,Non-B117,Cori_slidingWindow,0.8542607348348902,1.108477633559131,0.6000438361106492 29 | 2021-01-13,Non-B117,Cori_slidingWindow,0.8724536112362249,1.1121973637665528,0.632709858705897 30 | 2021-01-14,Non-B117,Cori_slidingWindow,0.8863587082158093,1.2097275253001136,0.562989891131505 31 | 2021-01-15,Non-B117,Cori_slidingWindow,0.8931174710657426,1.7887668369102663,0 32 | 2021-01-16,Non-B117,Cori_slidingWindow,0.8921323181609977,2.207765080557293,0 33 | 2021-01-17,Non-B117,Cori_slidingWindow,0.8857483662036427,1.7331547118631314,0.03834202054415414 34 | 2021-01-18,Non-B117,Cori_slidingWindow,0.8784290342059632,1.3265483570617884,0.43030971135013807 35 | 2021-01-19,Non-B117,Cori_slidingWindow,0.8726820631103941,1.1620813809889905,0.5832827452317977 36 | 2021-01-20,Non-B117,Cori_slidingWindow,0.867463666340555,1.12978179342859,0.60514553925252 37 | 2021-01-21,Non-B117,Cori_slidingWindow,0.8613158359405746,1.2587117031601878,0.4639199687209615 38 | 2021-01-22,Non-B117,Cori_slidingWindow,0.8549162775347119,1.7809926599648722,0 39 | 2021-01-23,Non-B117,Cori_slidingWindow,0.8501524893208281,2.04199707519039,0 40 | 2021-01-24,Non-B117,Cori_slidingWindow,0.8469314229142014,1.6487788437195938,0.04508400210880903 41 | 2021-01-25,Non-B117,Cori_slidingWindow,0.8443577091022969,1.3008811131398792,0.38783430506471456 42 | 2021-01-26,Non-B117,Cori_slidingWindow,0.8420514494315712,1.1319357200500089,0.5521671788131335 43 | 2021-01-27,Non-B117,Cori_slidingWindow,0.8395057235417209,1.0887009324490735,0.5903105146343683 44 | 2021-01-28,Non-B117,Cori_slidingWindow,0.8355592509342271,1.2027496463858562,0.4683688554825981 45 | 2021-01-29,Non-B117,Cori_slidingWindow,0.8290948633694459,1.6171456587106312,0.04104406802826077 46 | 2021-01-30,Non-B117,Cori_slidingWindow,0.8201165685655634,1.7796049300834076,0 47 | 2021-01-31,Non-B117,Cori_slidingWindow,0.8089762640169204,1.4179716305909842,0.19998089744285652 48 | 2021-02-01,Non-B117,Cori_slidingWindow,0.7964221170049139,1.144404443344525,0.4484397906653028 49 | 2021-02-02,Non-B117,Cori_slidingWindow,0.7846827148443485,1.0421929883522651,0.5271724413364318 50 | 2021-02-03,Non-B117,Cori_slidingWindow,0.7768138261333059,1.0408253742827172,0.5128022779838947 51 | 2021-02-04,Non-B117,Cori_slidingWindow,0.7735837441121723,1.1486491728829744,0.3985183153413703 52 | 2021-02-05,Non-B117,Cori_slidingWindow,0.7720303741232548,1.4887801554457876,0.05528059280072206 53 | 2021-02-06,Non-B117,Cori_slidingWindow,0.7694911588077264,1.6382730540314925,0 54 | 2021-02-07,Non-B117,Cori_slidingWindow,0.7674728637150506,1.3469752795213643,0.18797044790873707 55 | 2021-02-08,Non-B117,Cori_slidingWindow,0.7693570168029421,1.1177438545413065,0.42097017906457757 56 | 2021-02-09,Non-B117,Cori_slidingWindow,0.7755111519586905,1.0270630386958461,0.5239592652215348 57 | 2021-02-10,Non-B117,Cori_slidingWindow,0.7828020810079238,1.021117304132978,0.5444868578828697 58 | 2021-02-11,Non-B117,Cori_slidingWindow,0.7899270196031652,1.1369041419702608,0.4429498972360698 59 | 2021-02-12,Non-B117,Cori_slidingWindow,0.7974309628471667,1.6616665473913823,0 60 | 2021-02-13,Non-B117,Cori_slidingWindow,0.8059377699952137,2.2823884600847464,0 61 | 2021-02-14,Non-B117,Cori_slidingWindow,0.8156674494077261,1.886787990808283,0 62 | 2021-02-15,Non-B117,Cori_slidingWindow,0.8283234872897137,1.3745128189072866,0.28213415567214084 63 | 2021-02-16,Non-B117,Cori_slidingWindow,0.8458382245260688,1.1710323024261213,0.5206441466260163 64 | 2021-02-17,Non-B117,Cori_slidingWindow,0.8670958595769973,1.181172574307819,0.5530191448461756 65 | 2021-02-18,Non-B117,Cori_slidingWindow,0.8896249472252316,1.2415058792786782,0.5377440151717849 66 | 2021-02-19,Non-B117,Cori_slidingWindow,0.9119773491223226,1.522644394698586,0.30131030354605925 67 | 2021-02-20,Non-B117,Cori_slidingWindow,0.9327873398260472,2.193860149268876,0 68 | 2021-02-21,Non-B117,Cori_slidingWindow,0.9515239943586495,1.9613792721354852,0 69 | 2021-02-22,Non-B117,Cori_slidingWindow,0.9681411677934081,1.4857429347449154,0.4505394008419007 70 | 2021-02-23,Non-B117,Cori_slidingWindow,0.9822345109440421,1.2992381550248389,0.6652308668632454 71 | 2021-02-24,Non-B117,Cori_slidingWindow,0.9926867508983704,1.2795444739580364,0.7058290278387045 72 | 2021-02-25,Non-B117,Cori_slidingWindow,0.9988767951780635,1.371313338364696,0.626440251991431 73 | 2021-02-26,Non-B117,Cori_slidingWindow,1.001732130469081,2.176925828665545,0 74 | 2021-02-27,Non-B117,Cori_slidingWindow,1.0026609802459117,2.508403067532812,0 75 | 2021-02-28,Non-B117,Cori_slidingWindow,1.0026408900009751,1.8276668016293005,0.17761497837264983 76 | 2021-03-01,Non-B117,Cori_slidingWindow,1.0026221958282011,1.4085914341906003,0.5966529574658019 77 | 2020-12-15,Non-B117,Cori_step,1.1516213244300308,1.2472372766195297,1.056005372240532 78 | 2020-12-16,Non-B117,Cori_step,1.1516213244300308,1.2472372766195297,1.056005372240532 79 | 2020-12-17,Non-B117,Cori_step,1.1516213244300308,1.2472372766195297,1.056005372240532 80 | 2020-12-18,Non-B117,Cori_step,1.1516213244300308,1.2472372766195297,1.056005372240532 81 | 2020-12-19,Non-B117,Cori_step,1.1516213244300308,1.2472372766195297,1.056005372240532 82 | 2020-12-20,Non-B117,Cori_step,1.1516213244300308,1.2472372766195297,1.056005372240532 83 | 2020-12-21,Non-B117,Cori_step,1.1516213244300308,1.2472372766195297,1.056005372240532 84 | 2020-12-22,Non-B117,Cori_step,1.1516213244300308,1.2472372766195297,1.056005372240532 85 | 2020-12-23,Non-B117,Cori_step,1.1516213244300308,1.2472372766195297,1.056005372240532 86 | 2020-12-24,Non-B117,Cori_step,1.1516213244300308,1.2472372766195297,1.056005372240532 87 | 2020-12-25,Non-B117,Cori_step,1.1516213244300308,1.2472372766195297,1.056005372240532 88 | 2020-12-26,Non-B117,Cori_step,1.1516213244300308,1.2472372766195297,1.056005372240532 89 | 2020-12-27,Non-B117,Cori_step,1.1516213244300308,1.2472372766195297,1.056005372240532 90 | 2020-12-28,Non-B117,Cori_step,1.1516213244300308,1.2472372766195297,1.056005372240532 91 | 2020-12-29,Non-B117,Cori_step,1.1516213244300308,1.2472372766195297,1.056005372240532 92 | 2020-12-30,Non-B117,Cori_step,1.1516213244300308,1.2472372766195297,1.056005372240532 93 | 2020-12-31,Non-B117,Cori_step,1.1516213244300308,1.2472372766195297,1.056005372240532 94 | 2021-01-01,Non-B117,Cori_step,0.8135562055752342,0.9575981353307181,0.6695142758197503 95 | 2021-01-02,Non-B117,Cori_step,0.8135562055752342,0.9575981353307181,0.6695142758197503 96 | 2021-01-03,Non-B117,Cori_step,0.8135562055752342,0.9575981353307181,0.6695142758197503 97 | 2021-01-04,Non-B117,Cori_step,0.8135562055752342,0.9575981353307181,0.6695142758197503 98 | 2021-01-05,Non-B117,Cori_step,0.8135562055752342,0.9575981353307181,0.6695142758197503 99 | 2021-01-06,Non-B117,Cori_step,0.8135562055752342,0.9575981353307181,0.6695142758197503 100 | 2021-01-07,Non-B117,Cori_step,0.8135562055752342,0.9575981353307181,0.6695142758197503 101 | 2021-01-08,Non-B117,Cori_step,0.8135562055752342,0.9575981353307181,0.6695142758197503 102 | 2021-01-09,Non-B117,Cori_step,0.8135562055752342,0.9575981353307181,0.6695142758197503 103 | 2021-01-10,Non-B117,Cori_step,0.8135562055752342,0.9575981353307181,0.6695142758197503 104 | 2021-01-11,Non-B117,Cori_step,0.8135562055752342,0.9575981353307181,0.6695142758197503 105 | 2021-01-12,Non-B117,Cori_step,0.8135562055752342,0.9575981353307181,0.6695142758197503 106 | 2021-01-13,Non-B117,Cori_step,0.8135562055752342,0.9575981353307181,0.6695142758197503 107 | 2021-01-14,Non-B117,Cori_step,0.8135562055752342,0.9575981353307181,0.6695142758197503 108 | 2021-01-15,Non-B117,Cori_step,0.8135562055752342,0.9575981353307181,0.6695142758197503 109 | 2021-01-16,Non-B117,Cori_step,0.8135562055752342,0.9575981353307181,0.6695142758197503 110 | 2021-01-17,Non-B117,Cori_step,0.8135562055752342,0.9575981353307181,0.6695142758197503 111 | 2021-01-18,Non-B117,Cori_step,0.8460768826018618,0.9335836977800749,0.7585700674236486 112 | 2021-01-19,Non-B117,Cori_step,0.8460768826018618,0.9335836977800749,0.7585700674236486 113 | 2021-01-20,Non-B117,Cori_step,0.8460768826018618,0.9335836977800749,0.7585700674236486 114 | 2021-01-21,Non-B117,Cori_step,0.8460768826018618,0.9335836977800749,0.7585700674236486 115 | 2021-01-22,Non-B117,Cori_step,0.8460768826018618,0.9335836977800749,0.7585700674236486 116 | 2021-01-23,Non-B117,Cori_step,0.8460768826018618,0.9335836977800749,0.7585700674236486 117 | 2021-01-24,Non-B117,Cori_step,0.8460768826018618,0.9335836977800749,0.7585700674236486 118 | 2021-01-25,Non-B117,Cori_step,0.8460768826018618,0.9335836977800749,0.7585700674236486 119 | 2021-01-26,Non-B117,Cori_step,0.8460768826018618,0.9335836977800749,0.7585700674236486 120 | 2021-01-27,Non-B117,Cori_step,0.8460768826018618,0.9335836977800749,0.7585700674236486 121 | 2021-01-28,Non-B117,Cori_step,0.8460768826018618,0.9335836977800749,0.7585700674236486 122 | 2021-01-29,Non-B117,Cori_step,0.8460768826018618,0.9335836977800749,0.7585700674236486 123 | 2021-01-30,Non-B117,Cori_step,0.8460768826018618,0.9335836977800749,0.7585700674236486 124 | 2021-01-31,Non-B117,Cori_step,0.8460768826018618,0.9335836977800749,0.7585700674236486 125 | 2021-02-01,Non-B117,Cori_step,0.8460768826018618,0.9335836977800749,0.7585700674236486 126 | 2021-02-02,Non-B117,Cori_step,0.8460768826018618,0.9335836977800749,0.7585700674236486 127 | 2021-02-03,Non-B117,Cori_step,0.8460768826018618,0.9335836977800749,0.7585700674236486 128 | 2021-02-04,Non-B117,Cori_step,0.8460768826018618,0.9335836977800749,0.7585700674236486 129 | 2021-02-05,Non-B117,Cori_step,0.8460768826018618,0.9335836977800749,0.7585700674236486 130 | 2021-02-06,Non-B117,Cori_step,0.8460768826018618,0.9335836977800749,0.7585700674236486 131 | 2021-02-07,Non-B117,Cori_step,0.8460768826018618,0.9335836977800749,0.7585700674236486 132 | 2021-02-08,Non-B117,Cori_step,0.8460768826018618,0.9335836977800749,0.7585700674236486 133 | 2021-02-09,Non-B117,Cori_step,0.8460768826018618,0.9335836977800749,0.7585700674236486 134 | 2021-02-10,Non-B117,Cori_step,0.8460768826018618,0.9335836977800749,0.7585700674236486 135 | 2021-02-11,Non-B117,Cori_step,0.8460768826018618,0.9335836977800749,0.7585700674236486 136 | 2021-02-12,Non-B117,Cori_step,0.8460768826018618,0.9335836977800749,0.7585700674236486 137 | 2021-02-13,Non-B117,Cori_step,0.8460768826018618,0.9335836977800749,0.7585700674236486 138 | 2021-02-14,Non-B117,Cori_step,0.8460768826018618,0.9335836977800749,0.7585700674236486 139 | 2021-02-15,Non-B117,Cori_step,0.8460768826018618,0.9335836977800749,0.7585700674236486 140 | 2021-02-16,Non-B117,Cori_step,0.8460768826018618,0.9335836977800749,0.7585700674236486 141 | 2021-02-17,Non-B117,Cori_step,0.8460768826018618,0.9335836977800749,0.7585700674236486 142 | 2021-02-18,Non-B117,Cori_step,0.8460768826018618,0.9335836977800749,0.7585700674236486 143 | 2021-02-19,Non-B117,Cori_step,0.8460768826018618,0.9335836977800749,0.7585700674236486 144 | 2021-02-20,Non-B117,Cori_step,0.8460768826018618,0.9335836977800749,0.7585700674236486 145 | 2021-02-21,Non-B117,Cori_step,0.8460768826018618,0.9335836977800749,0.7585700674236486 146 | 2021-02-22,Non-B117,Cori_step,0.8460768826018618,0.9335836977800749,0.7585700674236486 147 | 2021-02-23,Non-B117,Cori_step,0.8460768826018618,0.9335836977800749,0.7585700674236486 148 | 2021-02-24,Non-B117,Cori_step,0.8460768826018618,0.9335836977800749,0.7585700674236486 149 | 2021-02-25,Non-B117,Cori_step,0.8460768826018618,0.9335836977800749,0.7585700674236486 150 | 2021-02-26,Non-B117,Cori_step,0.8460768826018618,0.9335836977800749,0.7585700674236486 151 | 2021-02-27,Non-B117,Cori_step,0.8460768826018618,0.9335836977800749,0.7585700674236486 152 | 2021-02-28,Non-B117,Cori_step,0.8460768826018618,0.9335836977800749,0.7585700674236486 153 | 2021-03-01,Non-B117,Cori_step,0.8460768826018618,0.9335836977800749,0.7585700674236486 154 | 2020-12-22,B117,Cori_slidingWindow,2.0011112712250068,2.527063843540035,1.5227762884094094 155 | 2020-12-23,B117,Cori_slidingWindow,1.8837919772586316,2.4639572984822884,1.3036266560349747 156 | 2020-12-24,B117,Cori_slidingWindow,1.8073162264076463,2.424532661543082,1.1900997912722109 157 | 2020-12-25,B117,Cori_slidingWindow,1.7548036044124518,2.4346614978618075,1.074945710963096 158 | 2020-12-26,B117,Cori_slidingWindow,1.7268332881892023,2.5094913857039787,0.944175190674426 159 | 2020-12-27,B117,Cori_slidingWindow,1.7273165117392364,2.543141229731118,0.9114917937473549 160 | 2020-12-28,B117,Cori_slidingWindow,1.7422297512952625,2.52840197005755,0.956057532532975 161 | 2020-12-29,B117,Cori_slidingWindow,1.7493769520125528,2.459194057019236,1.0395598470058696 162 | 2020-12-30,B117,Cori_slidingWindow,1.7401773821054596,2.349313694217483,1.1310410699934361 163 | 2020-12-31,B117,Cori_slidingWindow,1.722326509409284,2.2884069710405974,1.1562460477779706 164 | 2021-01-01,B117,Cori_slidingWindow,1.7097116398804895,2.3343247982970805,1.0850984814638982 165 | 2021-01-02,B117,Cori_slidingWindow,1.7106699415336728,2.435560281201032,0.9857796018663136 166 | 2021-01-03,B117,Cori_slidingWindow,1.726996725857493,2.540867533370884,0.9131259183441021 167 | 2021-01-04,B117,Cori_slidingWindow,1.7460719484846043,2.571175491110175,0.920968405859034 168 | 2021-01-05,B117,Cori_slidingWindow,1.7513484741795597,2.484549262861469,1.0181476854976508 169 | 2021-01-06,B117,Cori_slidingWindow,1.7367385308036694,2.3390150729732113,1.1344619886341274 170 | 2021-01-07,B117,Cori_slidingWindow,1.7041283407605101,2.209193906021063,1.1990627754999572 171 | 2021-01-08,B117,Cori_slidingWindow,1.6593996914268174,2.1353451986041505,1.1834541842494843 172 | 2021-01-09,B117,Cori_slidingWindow,1.6095928970716338,2.12552988618824,1.0936559079550277 173 | 2021-01-10,B117,Cori_slidingWindow,1.5635976816151407,2.1281788137963416,0.9990165494339397 174 | 2021-01-11,B117,Cori_slidingWindow,1.5257788730030604,2.086497562175145,0.9650601838309754 175 | 2021-01-12,B117,Cori_slidingWindow,1.4929158754524896,2.008094331296834,0.9777374196081453 176 | 2021-01-13,B117,Cori_slidingWindow,1.4561045869365883,1.9082537610539312,1.0039554128192454 177 | 2021-01-14,B117,Cori_slidingWindow,1.411408209502661,1.8098160546377515,1.0130003643675705 178 | 2021-01-15,B117,Cori_slidingWindow,1.3607963000197811,1.7370413945856844,0.9845512054538779 179 | 2021-01-16,B117,Cori_slidingWindow,1.3100065102035587,1.699505325438154,0.9205076949689635 180 | 2021-01-17,B117,Cori_slidingWindow,1.2644587480855471,1.687109166995268,0.8418083291758263 181 | 2021-01-18,B117,Cori_slidingWindow,1.2287691314160452,1.6752964074106942,0.7822418554213961 182 | 2021-01-19,B117,Cori_slidingWindow,1.2052416809258708,1.642091430907933,0.7683919309438085 183 | 2021-01-20,B117,Cori_slidingWindow,1.1908292873022062,1.5915077052286484,0.790150869375764 184 | 2021-01-21,B117,Cori_slidingWindow,1.1796676472201315,1.5427566735203868,0.8165786209198762 185 | 2021-01-22,B117,Cori_slidingWindow,1.1678311719843242,1.5094651186798465,0.8261972252888018 186 | 2021-01-23,B117,Cori_slidingWindow,1.1542634943583336,1.4975816884875086,0.8109453002291587 187 | 2021-01-24,B117,Cori_slidingWindow,1.1356854832491738,1.498379890639645,0.7729910758587026 188 | 2021-01-25,B117,Cori_slidingWindow,1.1093879160652909,1.4869521725982853,0.7318236595322964 189 | 2021-01-26,B117,Cori_slidingWindow,1.0789118768492738,1.4550452523673374,0.7027785013312101 190 | 2021-01-27,B117,Cori_slidingWindow,1.0527813035884528,1.4151578361900412,0.6904047709868644 191 | 2021-01-28,B117,Cori_slidingWindow,1.0351960039161918,1.3785856356934694,0.6918063721389143 192 | 2021-01-29,B117,Cori_slidingWindow,1.0221876480819994,1.3545003593782405,0.6898749367857582 193 | 2021-01-30,B117,Cori_slidingWindow,1.0128686938206701,1.3564653621443323,0.6692720254970078 194 | 2021-01-31,B117,Cori_slidingWindow,1.012084809386144,1.3827101853157053,0.6414594334565829 195 | 2021-02-01,B117,Cori_slidingWindow,1.0210655009542637,1.4164608532564376,0.6256701486520899 196 | 2021-02-02,B117,Cori_slidingWindow,1.0351085337880521,1.437953715679633,0.6322633518964713 197 | 2021-02-03,B117,Cori_slidingWindow,1.0506880117217081,1.435354792683901,0.6660212307595151 198 | 2021-02-04,B117,Cori_slidingWindow,1.0714246920045853,1.422644980076106,0.7202044039330646 199 | 2021-02-05,B117,Cori_slidingWindow,1.0974963191962746,1.4287681521017883,0.7662244862907609 200 | 2021-02-06,B117,Cori_slidingWindow,1.1275674572348764,1.4754057616413556,0.7797291528283972 201 | 2021-02-07,B117,Cori_slidingWindow,1.1589340630420475,1.5488270296646292,0.7690410964194658 202 | 2021-02-08,B117,Cori_slidingWindow,1.1875638056700932,1.6106058549555033,0.7645217563846832 203 | 2021-02-09,B117,Cori_slidingWindow,1.2105169077166722,1.6416807577893282,0.7793530576440163 204 | 2021-02-10,B117,Cori_slidingWindow,1.226939561588888,1.644021046645388,0.8098580765323882 205 | 2021-02-11,B117,Cori_slidingWindow,1.238969735520302,1.6280821502972267,0.8498573207433774 206 | 2021-02-12,B117,Cori_slidingWindow,1.2438523634664647,1.613207071561096,0.8744976553718333 207 | 2021-02-13,B117,Cori_slidingWindow,1.2398050545221002,1.620640251033066,0.8589698580111345 208 | 2021-02-14,B117,Cori_slidingWindow,1.2296114842126713,1.6413195243094587,0.8179034441158838 209 | 2021-02-15,B117,Cori_slidingWindow,1.2167186911697643,1.6553039618256475,0.778133420513881 210 | 2021-02-16,B117,Cori_slidingWindow,1.2011785596758813,1.645370425473793,0.7569866938779695 211 | 2021-02-17,B117,Cori_slidingWindow,1.1819485660227436,1.6003311404937255,0.7635659915517616 212 | 2021-02-18,B117,Cori_slidingWindow,1.161378849557308,1.5347143960577891,0.788043303056827 213 | 2021-02-19,B117,Cori_slidingWindow,1.1466016077941248,1.4815557591824473,0.8116474564058023 214 | 2021-02-20,B117,Cori_slidingWindow,1.1425795425278047,1.4725477682669816,0.8126113167886277 215 | 2021-02-21,B117,Cori_slidingWindow,1.1472756514849811,1.5135031660667737,0.7810481369031885 216 | 2021-02-22,B117,Cori_slidingWindow,1.154531855629424,1.5695869860998457,0.7394767251590022 217 | 2021-02-23,B117,Cori_slidingWindow,1.1603670142653586,1.6052619509064656,0.7154720776242517 218 | 2021-02-24,B117,Cori_slidingWindow,1.164133594831978,1.6159046452810348,0.7123625443829211 219 | 2021-02-25,B117,Cori_slidingWindow,1.1661715483037747,1.6122984834722935,0.7200446131352558 220 | 2021-02-26,B117,Cori_slidingWindow,1.166313880221793,1.5999050351828683,0.7327227252607176 221 | 2021-02-27,B117,Cori_slidingWindow,1.1651531917878637,1.5818912816889434,0.7484151018867841 222 | 2021-02-28,B117,Cori_slidingWindow,1.163596223958607,1.5619559582947842,0.7652364896224301 223 | 2021-03-01,B117,Cori_slidingWindow,1.1619561198544655,1.5428418856419592,0.7810703540669717 224 | 2020-12-20,B117,Cori_step,1.8858512646963834,2.2160980010398195,1.5556045283529474 225 | 2020-12-21,B117,Cori_step,1.8858512646963834,2.3246776445721427,1.4470248848206242 226 | 2020-12-22,B117,Cori_step,1.8858512646963834,2.3283623839012444,1.4433401454915225 227 | 2020-12-23,B117,Cori_step,1.8858512646963834,2.3283623839012444,1.4433401454915225 228 | 2020-12-24,B117,Cori_step,1.8858512646963834,2.3283623839012444,1.4433401454915225 229 | 2020-12-25,B117,Cori_step,1.8858512646963834,2.3283623839012444,1.4433401454915225 230 | 2020-12-26,B117,Cori_step,1.8858512646963834,2.3283623839012444,1.4433401454915225 231 | 2020-12-27,B117,Cori_step,1.8858512646963834,2.3283623839012444,1.4433401454915225 232 | 2020-12-28,B117,Cori_step,1.8858512646963834,2.3283623839012444,1.4433401454915225 233 | 2020-12-29,B117,Cori_step,1.8858512646963834,2.3283623839012444,1.4433401454915225 234 | 2020-12-30,B117,Cori_step,1.8858512646963834,2.3283623839012444,1.4433401454915225 235 | 2020-12-31,B117,Cori_step,1.8858512646963834,2.3283623839012444,1.4433401454915225 236 | 2021-01-01,B117,Cori_step,1.4642829810148843,1.7204683882760836,1.208097573753685 237 | 2021-01-02,B117,Cori_step,1.4642829810148843,1.7204683882760836,1.208097573753685 238 | 2021-01-03,B117,Cori_step,1.4642829810148843,1.7204683882760836,1.208097573753685 239 | 2021-01-04,B117,Cori_step,1.4642829810148843,1.7204683882760836,1.208097573753685 240 | 2021-01-05,B117,Cori_step,1.4642829810148843,1.7204683882760836,1.208097573753685 241 | 2021-01-06,B117,Cori_step,1.4642829810148843,1.7204683882760836,1.208097573753685 242 | 2021-01-07,B117,Cori_step,1.4642829810148843,1.7204683882760836,1.208097573753685 243 | 2021-01-08,B117,Cori_step,1.4642829810148843,1.7204683882760836,1.208097573753685 244 | 2021-01-09,B117,Cori_step,1.4642829810148843,1.7204683882760836,1.208097573753685 245 | 2021-01-10,B117,Cori_step,1.4642829810148843,1.7204683882760836,1.208097573753685 246 | 2021-01-11,B117,Cori_step,1.4642829810148843,1.7204683882760836,1.208097573753685 247 | 2021-01-12,B117,Cori_step,1.4642829810148843,1.7204683882760836,1.208097573753685 248 | 2021-01-13,B117,Cori_step,1.4642829810148843,1.7204683882760836,1.208097573753685 249 | 2021-01-14,B117,Cori_step,1.4642829810148843,1.7204683882760836,1.208097573753685 250 | 2021-01-15,B117,Cori_step,1.4642829810148843,1.7204683882760836,1.208097573753685 251 | 2021-01-16,B117,Cori_step,1.4642829810148843,1.7204683882760836,1.208097573753685 252 | 2021-01-17,B117,Cori_step,1.4642829810148843,1.7204683882760836,1.208097573753685 253 | 2021-01-18,B117,Cori_step,1.150044532800955,1.2938406293220552,1.0062484362798547 254 | 2021-01-19,B117,Cori_step,1.150044532800955,1.2938406293220552,1.0062484362798547 255 | 2021-01-20,B117,Cori_step,1.150044532800955,1.2938406293220552,1.0062484362798547 256 | 2021-01-21,B117,Cori_step,1.150044532800955,1.2938406293220552,1.0062484362798547 257 | 2021-01-22,B117,Cori_step,1.150044532800955,1.2938406293220552,1.0062484362798547 258 | 2021-01-23,B117,Cori_step,1.150044532800955,1.2938406293220552,1.0062484362798547 259 | 2021-01-24,B117,Cori_step,1.150044532800955,1.2938406293220552,1.0062484362798547 260 | 2021-01-25,B117,Cori_step,1.150044532800955,1.2938406293220552,1.0062484362798547 261 | 2021-01-26,B117,Cori_step,1.150044532800955,1.2938406293220552,1.0062484362798547 262 | 2021-01-27,B117,Cori_step,1.150044532800955,1.2938406293220552,1.0062484362798547 263 | 2021-01-28,B117,Cori_step,1.150044532800955,1.2938406293220552,1.0062484362798547 264 | 2021-01-29,B117,Cori_step,1.150044532800955,1.2938406293220552,1.0062484362798547 265 | 2021-01-30,B117,Cori_step,1.150044532800955,1.2938406293220552,1.0062484362798547 266 | 2021-01-31,B117,Cori_step,1.150044532800955,1.2938406293220552,1.0062484362798547 267 | 2021-02-01,B117,Cori_step,1.150044532800955,1.2938406293220552,1.0062484362798547 268 | 2021-02-02,B117,Cori_step,1.150044532800955,1.2938406293220552,1.0062484362798547 269 | 2021-02-03,B117,Cori_step,1.150044532800955,1.2938406293220552,1.0062484362798547 270 | 2021-02-04,B117,Cori_step,1.150044532800955,1.2938406293220552,1.0062484362798547 271 | 2021-02-05,B117,Cori_step,1.150044532800955,1.2938406293220552,1.0062484362798547 272 | 2021-02-06,B117,Cori_step,1.150044532800955,1.2938406293220552,1.0062484362798547 273 | 2021-02-07,B117,Cori_step,1.150044532800955,1.2938406293220552,1.0062484362798547 274 | 2021-02-08,B117,Cori_step,1.150044532800955,1.2938406293220552,1.0062484362798547 275 | 2021-02-09,B117,Cori_step,1.150044532800955,1.2938406293220552,1.0062484362798547 276 | 2021-02-10,B117,Cori_step,1.150044532800955,1.2938406293220552,1.0062484362798547 277 | 2021-02-11,B117,Cori_step,1.150044532800955,1.2938406293220552,1.0062484362798547 278 | 2021-02-12,B117,Cori_step,1.150044532800955,1.2938406293220552,1.0062484362798547 279 | 2021-02-13,B117,Cori_step,1.150044532800955,1.2938406293220552,1.0062484362798547 280 | 2021-02-14,B117,Cori_step,1.150044532800955,1.2938406293220552,1.0062484362798547 281 | 2021-02-15,B117,Cori_step,1.150044532800955,1.2938406293220552,1.0062484362798547 282 | 2021-02-16,B117,Cori_step,1.150044532800955,1.2938406293220552,1.0062484362798547 283 | 2021-02-17,B117,Cori_step,1.150044532800955,1.2938406293220552,1.0062484362798547 284 | 2021-02-18,B117,Cori_step,1.150044532800955,1.2938406293220552,1.0062484362798547 285 | 2021-02-19,B117,Cori_step,1.150044532800955,1.2938406293220552,1.0062484362798547 286 | 2021-02-20,B117,Cori_step,1.150044532800955,1.2938406293220552,1.0062484362798547 287 | 2021-02-21,B117,Cori_step,1.150044532800955,1.2938406293220552,1.0062484362798547 288 | 2021-02-22,B117,Cori_step,1.150044532800955,1.2938406293220552,1.0062484362798547 289 | 2021-02-23,B117,Cori_step,1.150044532800955,1.2938406293220552,1.0062484362798547 290 | 2021-02-24,B117,Cori_step,1.150044532800955,1.2938406293220552,1.0062484362798547 291 | 2021-02-25,B117,Cori_step,1.150044532800955,1.2938406293220552,1.0062484362798547 292 | 2021-02-26,B117,Cori_step,1.150044532800955,1.2938406293220552,1.0062484362798547 293 | 2021-02-27,B117,Cori_step,1.150044532800955,1.2938406293220552,1.0062484362798547 294 | 2021-02-28,B117,Cori_step,1.150044532800955,1.2938406293220552,1.0062484362798547 295 | 2021-03-01,B117,Cori_step,1.150044532800955,1.2938406293220552,1.0062484362798547 296 | --------------------------------------------------------------------------------