├── .github └── workflows │ ├── sync.yml │ └── test.yml ├── .gitignore ├── .readthedocs.yaml ├── LICENSE.txt ├── README.md ├── TROUBLESHOOTING.md ├── docs ├── Makefile ├── _static │ └── codeblock.png ├── abundances.rst ├── background.rst ├── conf.py ├── index.rst ├── make.bat ├── nuclear.rst ├── reactions.rst ├── requirements.txt ├── special_funcs.rst ├── thermo.rst └── weak_rates.rst ├── example_notebooks ├── NuisanceParametersImpact.ipynb ├── Schramm.ipynb ├── Schramm.pdf ├── background_evolution.ipynb ├── inference_Omega_b.ipynb ├── nuclear_evolution.ipynb ├── plot_params.py ├── scan_over_Omega_b_tau_n.ipynb └── weak_rates.ipynb ├── linx ├── __init__.py ├── abundances.py ├── background.py ├── const.py ├── data │ ├── __init__.py │ ├── background │ │ ├── QED_P_int.txt │ │ ├── QED_d2P_intdT2.txt │ │ ├── QED_dP_intdT.txt │ │ ├── nue_ann.txt │ │ ├── nue_scatt.txt │ │ ├── numu_ann.txt │ │ └── numu_scatt.txt │ ├── nuclear_rates │ │ ├── __init__.py │ │ ├── key_PArthENoPE.py │ │ ├── key_PRIMAT_2018 │ │ │ ├── Be7nLi7p.txt │ │ │ ├── He3aBe7g.txt │ │ │ ├── He3dap.txt │ │ │ ├── He3ntp.txt │ │ │ ├── Li7paa.txt │ │ │ ├── ddHe3n.txt │ │ │ ├── ddtp.txt │ │ │ ├── dpHe3g.txt │ │ │ ├── npdg.txt │ │ │ ├── taLi7g.txt │ │ │ ├── tdan.txt │ │ │ └── tpag.txt │ │ ├── key_PRIMAT_2023 │ │ │ ├── Be7nLi7p.txt │ │ │ ├── He3aBe7g.txt │ │ │ ├── He3dap.txt │ │ │ ├── He3ntp.txt │ │ │ ├── Li7paa.txt │ │ │ ├── ddHe3n.txt │ │ │ ├── ddtp.txt │ │ │ ├── dpHe3g.txt │ │ │ ├── npdg.txt │ │ │ ├── taLi7g.txt │ │ │ ├── tdan.txt │ │ │ └── tpag.txt │ │ ├── key_YOF │ │ │ ├── Be7nLi7p.txt │ │ │ ├── He3aBe7g.txt │ │ │ ├── He3dap.txt │ │ │ ├── He3ntp.txt │ │ │ ├── Li7paa.txt │ │ │ ├── ddHe3n.txt │ │ │ ├── ddtp.txt │ │ │ ├── dpHe3g.txt │ │ │ ├── npdg.txt │ │ │ ├── taLi7g.txt │ │ │ ├── tdan.txt │ │ │ └── tpag.txt │ │ └── other_PRIMAT_2023 │ │ │ ├── B8dBe7He3.txt │ │ │ ├── B8nBe7d.txt │ │ │ ├── B8nLi6He3.txt │ │ │ ├── B8naap.txt │ │ │ ├── B8tBe7a.txt │ │ │ ├── B8taaHe3.txt │ │ │ ├── Be7He3ppaa.txt │ │ │ ├── Be7daap.txt │ │ │ ├── Be7naa.txt │ │ │ ├── Be7pB8g.txt │ │ │ ├── Be7tLi6a.txt │ │ │ ├── Be7tLi7He3.txt │ │ │ ├── Be7taad.txt │ │ │ ├── Be7taanp.txt │ │ │ ├── He3He3app.txt │ │ │ ├── He3nag.txt │ │ │ ├── He3tLi6g.txt │ │ │ ├── He3tad.txt │ │ │ ├── He3tanp.txt │ │ │ ├── Li6He3Be7d.txt │ │ │ ├── Li6He3aap.txt │ │ │ ├── Li6dBe7n.txt │ │ │ ├── Li6dLi7p.txt │ │ │ ├── Li6nLi7g.txt │ │ │ ├── Li6nta.txt │ │ │ ├── Li6pBe7g.txt │ │ │ ├── Li6pHe3a.txt │ │ │ ├── Li6tLi7d.txt │ │ │ ├── Li6tLi8p.txt │ │ │ ├── Li6taan.txt │ │ │ ├── Li7He3Li6a.txt │ │ │ ├── Li7He3aad.txt │ │ │ ├── Li7He3aanp.txt │ │ │ ├── Li7dLi8p.txt │ │ │ ├── Li7daan.txt │ │ │ ├── Li7nLi8g.txt │ │ │ ├── Li7paag.txt │ │ │ ├── Li7taann.txt │ │ │ ├── Li8He3Li7a.txt │ │ │ ├── Li8He3aat.txt │ │ │ ├── Li8dLi7t.txt │ │ │ ├── Li8paan.txt │ │ │ ├── annHe6g.txt │ │ │ ├── anpLi6g.txt │ │ │ ├── daLi6g.txt │ │ │ ├── ddag.txt │ │ │ ├── dntg.txt │ │ │ ├── ppndp.txt │ │ │ └── ttann.txt │ └── weak_thermal_corrections │ │ ├── nTOp_thermal_corrections_SBBN.txt │ │ └── pTOn_thermal_corrections_SBBN.txt ├── nuclear.py ├── reactions.py ├── special_funcs.py ├── thermo.py └── weak_rates.py ├── pytest.ini ├── pytest ├── test_abundances.py └── test_numpyro.py ├── requirements.txt └── scripts ├── BBN_only_marg_omegab.py ├── BBN_only_omegab_PArthAnalysis.py ├── CMB_BBN_marg_nuisance_omegab_Neff.py ├── batch_scripts ├── run_dynesty_BBN_only_marg_omegab.slurm ├── run_dynesty_BBN_only_omegab_PArthAnalysis.slurm ├── run_dynesty_CMB_BBN_marg_nuisance_omegab_Neff.slurm └── submit_grad_bbn.sh ├── related_notebooks ├── example_analysis.ipynb └── svi_analysis.ipynb ├── run_numpyro.py ├── samples ├── samples_svi_mcmc.pkl └── samples_svi_mcmc_bbn_only_False_n_steps_svi_2000_n_particles_svi_1_lr_0.0006_rng_svi_1792_n_samples_mcmc_2000_n_warmup_mcmc_500_n_chains_2_rng_mcmc_10700_step_size_0.01.pkl ├── test_SBBN_PRIMAT.py ├── test_SBBN_PRyM.py ├── test_full_network_PRIMAT.py └── test_full_network_PRyM.py 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